Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G002220 Citrullus lanatus HOM05D003893 ORTHO05D005167 0.0e+00 1256.1 623 100.0
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 2.2e-295 1018.5 567 89.4
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 1.9e-294 1015.4 567 89.2
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 8.1e-253 877.1 558 79.6
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 3.2e-169 599.4 575 55.7
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 5.4e-164 582.0 575 52.9
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 9.2e-164 581.3 572 52.8
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 7.7e-163 578.2 571 53.4
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 1.3e-162 577.4 566 53.0
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 3.8e-162 575.9 566 52.7
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 1.1e-161 574.3 599 49.6
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 1.4e-159 567.4 575 52.0
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 6.4e-157 558.5 569 51.3
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 9.2e-156 554.7 568 51.1
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 2.3e-154 550.1 563 51.7
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 1.5e-153 547.4 582 51.2
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 1.6e-152 543.9 568 52.6
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 3.1e-151 539.7 565 49.9
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 5.8e-150 535.4 572 50.3
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 5.4e-148 528.9 609 47.9
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 2.0e-147 526.9 574 50.0
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 5.6e-145 518.8 583 47.2
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 2.3e-143 513.5 559 48.7
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 6.8e-143 511.9 605 47.3
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 6.8e-143 511.9 576 47.6
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 2.6e-142 510.0 571 49.4
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 1.7e-141 507.3 572 48.1
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 1.7e-141 507.3 569 47.3
Psat4g076000 Pisum sativum HOM05D003893 ORTHO05D005167 2.9e-141 506.5 571 48.0
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 3.2e-140 503.1 569 46.4
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 1.0e-138 498.0 569 46.9
TPR.G25755 Trifolium pratense HOM05D003893 ORTHO05D005167 1.3e-138 497.7 569 46.9
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 5.1e-138 495.7 603 46.9
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 5.6e-137 492.3 565 48.3
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 3.6e-136 489.6 574 48.3
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 8.9e-135 485.0 569 46.7
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 1.2e-134 484.6 607 46.0
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 2.6e-134 483.4 581 45.1
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 2.2e-133 480.3 570 45.1
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 3.2e-132 476.5 577 44.9
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 4.1e-132 476.1 567 45.9
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 1.6e-131 474.2 572 45.8
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 3.5e-131 473.0 570 45.1
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 7.8e-131 471.9 571 45.5
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 1.3e-130 471.1 572 44.8
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 1.3e-130 471.1 572 44.8
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 1.3e-130 471.1 574 44.4
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 1.7e-130 470.7 567 44.3
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 3.0e-130 469.9 569 44.3
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 3.9e-130 469.5 575 45.4
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 3.9e-130 469.5 572 44.8
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 5.1e-130 469.2 565 45.3
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 6.6e-130 468.8 586 45.1
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 3.3e-129 466.5 545 45.7
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 3.3e-129 466.5 566 45.4
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 3.1e-127 459.9 595 43.7
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 6.9e-127 458.8 572 44.6
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 8.4e-125 451.8 579 42.7
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 1.4e-124 451.1 575 43.7
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 3.2e-124 449.9 571 44.5
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 1.7e-122 444.1 568 43.5
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 1.6e-120 437.6 566 42.0
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 3.6e-120 436.4 416 54.1
Hund14479 Selenicereus undatus HOM05D003893 ORTHO05D005167 3.1e-119 433.3 545 44.6
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 5.3e-119 432.6 572 43.7
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 2.0e-118 430.6 513 45.4
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 1.3e-114 417.9 563 42.5
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 1.2e-110 404.8 570 41.9
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 2.0e-110 404.1 452 47.6
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 3.4e-110 403.3 480 45.4
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 5.8e-110 402.5 565 40.9
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 1.9e-105 387.5 563 40.1
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 1.9e-105 387.5 567 39.3
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 1.6e-104 384.4 482 44.2
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 6.9e-103 379.0 472 43.0
Haze_08365 Corylus avellana HOM05D003893 ORTHO05D005167 7.6e-94 349.0 370 51.1
SalBow1G0831 Salvia bowleyana HOM05D003893 ORTHO05D005167 8.7e-90 335.5 477 40.5
VMungo0251G3747 Vigna mungo HOM05D003893 ORTHO05D005167 1.5e-89 334.7 741 32.5
COL.COLO4_22133 Corchorus olitorius HOM05D003893 ORTHO05D005167 4.1e-87 326.6 495 39.8
vmacro17755 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 2.2e-85 320.9 464 41.4
Nitab4.5_0009451g0070 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.9e-84 317.8 572 34.8
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 4.2e-84 316.6 274 58.4
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 1.3e-80 305.1 424 41.5
Zm00001eb000190 Zea mays HOM05D003893 ORTHO05D005167 3.7e-80 303.5 572 36.5
SEGI_27963 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 3.0e-74 283.9 505 35.2
ATR0665G055 Amborella trichopoda HOM05D003893 ORTHO05D005167 5.7e-73 279.6 476 38.9
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 9.7e-65 252.3 236 56.4
Migut.E01263 Erythranthe guttata HOM05D003893 ORTHO05D005167 2.4e-63 247.7 373 37.5
Mapoly0105s0045 Marchantia polymorpha HOM05D003893 ORTHO05D005167 7.0e-63 246.1 599 30.9
CiPaw.11G072500 Carya illinoinensis HOM05D003893 ORTHO05D005167 2.8e-51 207.6 298 39.6
CDE12G0047 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 2.1e-43 181.4 169 51.5
Haze_08366 Corylus avellana HOM05D003893 ORTHO05D005167 2.9e-32 144.4 102 64.7
Os10g0142900 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 2.1e-27 128.3 183 43.2
Ca_30504_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 1.6e-22 112.1 119 49.6
CBR_g21120 Chara braunii HOM05D003893 ORTHO05D005167 2.7e-22 111.3 351 27.1
unitig_21.g20369 Utricularia gibba HOM05D003893 ORTHO05D005167 1.1e-20 105.9 134 45.5
Ah.07g199160 Amaranthus hybridus HOM05D003893 ORTHO05D005167 2.1e-19 101.7 82 53.7
SalBow1G6370 Salvia bowleyana HOM05D003893 ORTHO05D005167 4.7e-19 100.5 91 50.5
BcaC09g49809 Brassica carinata HOM05D003893 ORTHO05D017260 2.4e-18 98.2 119 44.5
C01p32750 Brassica napus HOM05D003893 ORTHO05D017260 2.4e-18 98.2 119 44.5
A01p25860 Brassica napus HOM05D003893 ORTHO05D017260 1.3e-16 92.4 104 47.1
Ah.07g199150 Amaranthus hybridus HOM05D003893 ORTHO05D017260 3.3e-12 77.8 87 44.8
BcaC08g45749 Brassica carinata HOM05D003893 ORTHO05D021800 1.1e-10 72.8 207 29.0
BolC1t03210H Brassica oleracea HOM05D003893 ORTHO05D017260 2.4e-10 71.6 76 50.0
BcaB04g18068 Brassica carinata HOM05D003893 ORTHO05D017260 3.1e-10 71.2 80 47.5
BcaC09g49608 Brassica carinata HOM05D000205 ORTHO05D017260 6.9e-10 70.1 71 49.3
C05p27230 Brassica napus HOM05D003893 ORTHO05D005167 4.4e-09 67.4 62 51.6
BcaB07g32633 Brassica carinata HOM05D003893 ORTHO05D017260 9.9e-09 66.2 80 45.0
BcaC05g26842 Brassica carinata HOM05D003893 ORTHO05D021800 8.4e-08 63.2 52 55.8
BolC5t31436H Brassica oleracea HOM05D003893 ORTHO05D021800 8.4e-08 63.2 52 55.8
BolC4t23418H Brassica oleracea HOM05D003893 ORTHO05D021800 2.4e-07 61.6 51 54.9


User provided reference genes

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