Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G000180 Citrullus lanatus HOM05D004017 ORTHO05D004612 1.1e-72 276.6 139 100.0
MELO3C013715.2 Cucumis melo HOM05D004017 ORTHO05D004612 5.9e-47 191.0 112 87.5
Sed0025898 Sechium edule HOM05D004017 ORTHO05D004612 3.6e-44 181.8 112 83.0
TAR628G0604 Trochodendron aralioides HOM05D004017 ORTHO05D004612 3.1e-35 152.1 113 71.7
Phvul.002G116900 Phaseolus vulgaris HOM05D004017 ORTHO05D004612 4.0e-35 151.8 112 67.9
TPR.G33889 Trifolium pratense HOM05D004017 ORTHO05D004612 4.0e-35 151.8 109 70.6
FvH4_1g10270 Fragaria vesca HOM05D004017 ORTHO05D004612 8.9e-35 150.6 111 71.2
FAN19G1215 Fragaria x ananassa HOM05D004017 ORTHO05D004612 1.2e-34 150.2 111 70.3
Psat2g148040 Pisum sativum HOM05D004017 ORTHO05D004612 1.2e-34 150.2 111 66.7
CSS0022647 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 1.5e-34 149.8 114 71.1
CSS0031153 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 1.5e-34 149.8 114 71.1
CSS0034748 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 1.5e-34 149.8 114 71.1
Lalb_Chr16g0380061 Lupinus albus HOM05D004017 ORTHO05D004612 2.0e-34 149.4 112 67.9
Medtr5g024250 Medicago truncatula HOM05D004017 ORTHO05D004612 2.0e-34 149.4 110 69.1
Rhsim10G0195200 Rhododendron simsii HOM05D004017 ORTHO05D004612 3.4e-34 148.7 112 71.4
FAN28G2227 Fragaria x ananassa HOM05D004017 ORTHO05D004612 4.4e-34 148.3 110 70.9
CSS0019676 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 7.5e-34 147.5 114 70.2
Potri.005G101900 Populus trichocarpa HOM05D004017 ORTHO05D004612 7.5e-34 147.5 112 67.9
Glyma.01G158400 Glycine max HOM05D004017 ORTHO05D004612 9.8e-34 147.1 112 68.8
CiPaw.07G002300 Carya illinoinensis HOM05D004017 ORTHO05D004612 1.3e-33 146.7 110 70.9
GSVIVG01026635001 Vitis vinifera HOM05D004017 ORTHO05D004612 1.3e-33 146.7 112 70.5
Actinidia22894 Actinidia chinensis HOM05D004017 ORTHO05D004612 1.7e-33 146.4 113 69.0
Nn6g31689 Nelumbo nucifera HOM05D004017 ORTHO05D004612 2.2e-33 146.0 109 69.7
vmacro20628 Vaccinium macrocarpon HOM05D004017 ORTHO05D004612 2.9e-33 145.6 110 70.9
Atru.chr3.129 Acer truncatum HOM05D004017 ORTHO05D004612 3.7e-33 145.2 112 68.8
FAN26G0543 Fragaria x ananassa HOM05D004017 ORTHO05D004612 3.7e-33 145.2 111 69.4
Sabra05G0084300 Salix brachista HOM05D004017 ORTHO05D004612 3.7e-33 145.2 110 68.2
QL06p053019 Quercus lobata HOM05D004017 ORTHO05D004612 4.9e-33 144.8 112 69.6
CSS0016610 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 6.4e-33 144.4 114 68.4
Hma1.2p1_0300F.1_g117960 Hydrangea macrophylla HOM05D004017 ORTHO05D004612 6.4e-33 144.4 114 68.4
RcHm_v2.0_Chr2g0097091 Rosa chinensis HOM05D004017 ORTHO05D004612 6.4e-33 144.4 111 67.6
Ca_24985_v3 Cicer arietinum L. HOM05D004017 ORTHO05D004612 8.3e-33 144.1 110 67.3
MD02G1114700 Malus domestica HOM05D004017 ORTHO05D004612 1.4e-32 143.3 109 67.9
Thecc.01G005000 Theobroma cacao HOM05D004017 ORTHO05D004612 3.2e-32 142.1 112 64.3
Dinv28321 Davidia involucrata HOM05D004017 ORTHO05D004612 5.4e-32 141.4 112 67.0
Cpa.g.sc6.367 Carica papaya HOM05D004017 ORTHO05D004612 1.2e-31 140.2 112 63.4
COL.COLO4_22554 Corchorus olitorius HOM05D004017 ORTHO05D004612 1.6e-31 139.8 109 64.2
DCAR_016694 Daucus carota HOM05D004017 ORTHO05D004612 2.1e-31 139.4 110 66.4
FAN23G1226 Fragaria x ananassa HOM05D004017 ORTHO05D004612 2.7e-31 139.0 123 63.4
PGR142G4352 Punica granatum HOM05D004017 ORTHO05D004612 2.7e-31 139.0 107 69.2
Nitab4.5_0001467g0030 Nicotiana tabacum HOM05D004017 ORTHO05D004612 3.5e-31 138.7 110 66.4
TWI09G1144 Tripterygium wilfordii HOM05D004017 ORTHO05D004612 3.5e-31 138.7 112 66.1
PSO541G0703 Papaver somniferum HOM05D004017 ORTHO05D004612 4.6e-31 138.3 109 67.9
ECA238G2486 Erigeron canadensis HOM05D004017 ORTHO05D004612 6.0e-31 137.9 109 65.1
Manes.02G114300 Manihot esculenta HOM05D004017 ORTHO05D004612 6.0e-31 137.9 112 65.2
Nitab4.5_0004608g0030 Nicotiana tabacum HOM05D004017 ORTHO05D004612 6.0e-31 137.9 110 66.4
Duzib147G1448 Durio zibethinus HOM05D004017 ORTHO05D004612 7.8e-31 137.5 112 62.5
HanXRQChr14g0442551 Helianthus annuus HOM05D004017 ORTHO05D004612 7.8e-31 137.5 107 67.3
Prupe.7G183500 Prunus persica HOM05D004017 ORTHO05D004612 7.8e-31 137.5 107 68.2
Lj2g0020546 Lotus japonicus HOM05D004017 ORTHO05D004612 1.3e-30 136.7 107 67.3
Aa31LG6G12480 Aethionema arabicum HOM05D004017 ORTHO05D004612 1.7e-30 136.3 111 64.0
VMungo1215G1547 Vigna mungo HOM05D004017 ORTHO05D004612 1.7e-30 136.3 97 70.1
Cc07_g11910 Coffea canephora HOM05D004017 ORTHO05D004612 2.3e-30 136.0 110 67.3
Ciclev10024702m.g Citrus clementina HOM05D004017 ORTHO05D004612 3.0e-30 135.6 106 67.9
Gohir.D03G001700 Gossypium hirsutum HOM05D004017 ORTHO05D004612 3.0e-30 135.6 110 65.5
Gorai.003G002000 Gossypium raimondii HOM05D004017 ORTHO05D004612 3.0e-30 135.6 110 65.5
Gohir.A02G178100 Gossypium hirsutum HOM05D004017 ORTHO05D004612 3.9e-30 135.2 116 62.9
Solyc02g082660.3 Solanum lycopersicum HOM05D004017 ORTHO05D004612 3.9e-30 135.2 110 64.5
Sopen02g027400 Solanum pennellii HOM05D004017 ORTHO05D004612 3.9e-30 135.2 110 64.5
CARHR243850 Cardamine hirsuta HOM05D004017 ORTHO05D004612 5.1e-30 134.8 111 64.0
Peaxi162Scf00121g02447 Petunia axillaris HOM05D004017 ORTHO05D004612 8.6e-30 134.0 107 65.4
ATR0807G175 Amborella trichopoda HOM05D004017 ORTHO05D004612 1.1e-29 133.7 111 64.0
Aqoxy6G01621 Aquilegia oxysepala HOM05D004017 ORTHO05D004612 1.1e-29 133.7 110 64.5
THA.LOC104819715 Tarenaya hassleriana HOM05D004017 ORTHO05D004612 1.1e-29 133.7 110 64.5
Carub.0007s0480 Capsella rubella HOM05D004017 ORTHO05D004612 1.9e-29 132.9 110 63.6
Thhalv10024245m.g Eutrema salsugineum HOM05D004017 ORTHO05D004612 1.9e-29 132.9 111 63.1
C07p61210 Brassica napus HOM05D004017 ORTHO05D004612 5.6e-29 131.3 118 58.5
Lsat_1_v5_gn_2_73681 Lactuca sativa HOM05D004017 ORTHO05D004612 5.6e-29 131.3 107 63.6
SGA_v2.0_scaffold61G21182 Striga asiatica HOM05D004017 ORTHO05D004612 5.6e-29 131.3 107 65.4
Migut.L00849 Erythranthe guttata HOM05D004017 ORTHO05D004612 7.3e-29 131.0 109 64.2
Migut.L00851 Erythranthe guttata HOM05D004017 ORTHO05D004612 7.3e-29 131.0 112 62.5
Hund03598 Selenicereus undatus HOM05D004017 ORTHO05D004612 7.3e-29 131.0 113 60.2
CAN.G1238.14 Capsicum annuum HOM05D004017 ORTHO05D004612 9.5e-29 130.6 111 64.9
AL7G15650 Arabidopsis lyrata HOM05D004017 ORTHO05D004612 1.2e-28 130.2 113 61.9
AT4G35520 Arabidopsis thaliana HOM05D004017 ORTHO05D004612 1.2e-28 130.2 113 61.9
BolC7t46547H Brassica oleracea HOM05D004017 ORTHO05D004612 1.2e-28 130.2 112 60.7
A03p63640 Brassica napus HOM05D004017 ORTHO05D004612 2.8e-28 129.0 111 60.4
BraA03t15435Z Brassica rapa HOM05D004017 ORTHO05D004612 2.8e-28 129.0 111 60.4
Eucgr.J02538 Eucalyptus grandis HOM05D004017 ORTHO05D004612 2.8e-28 129.0 110 64.5
AUR62003744 Chenopodium quinoa HOM05D004017 ORTHO05D004612 8.1e-28 127.5 107 61.7
Sp7g33300 Schrenkiella parvula HOM05D004017 ORTHO05D004612 8.1e-28 127.5 111 61.3
AUR62002051 Chenopodium quinoa HOM05D004017 ORTHO05D004612 4.0e-27 125.2 112 58.9
Zm00001eb104330 Zea mays HOM05D004017 ORTHO05D004612 4.0e-27 125.2 108 59.3
Zm00001eb104340 Zea mays HOM05D004017 ORTHO05D004612 4.0e-27 125.2 108 59.3
Zm00001eb104360 Zea mays HOM05D004017 ORTHO05D004612 4.0e-27 125.2 108 59.3
unitig_747.g21784 Utricularia gibba HOM05D004017 ORTHO05D004612 6.8e-27 124.4 110 59.1
HPP92_020507 Vanilla planifolia HOM05D004017 ORTHO05D004612 8.9e-27 124.0 107 58.9
Os09g0551900 Oryza sativa ssp. japonica HOM05D004017 ORTHO05D004612 2.4e-24 115.9 111 55.9
arahy.Tifrunner.gnm1.ann1.4CZ79I Arachis hypogaea HOM05D004017 ORTHO05D004612 9.2e-24 114.0 96 64.6
arahy.Tifrunner.gnm1.ann1.FZX4ED Arachis hypogaea HOM05D004017 ORTHO05D004612 9.2e-24 114.0 96 64.6
Mapoly0006s0222 Marchantia polymorpha HOM05D004017 ORTHO05D004612 1.6e-20 103.2 75 65.3
SHI29525 Sapria himalayana HOM05D004017 ORTHO05D004612 4.7e-20 101.7 136 43.4
Pp3c13_10410 Physcomitrium patens HOM05D004017 ORTHO05D004612 5.2e-19 98.2 118 46.6
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 3.4e-18 95.5 72 63.9
MD15G1230600 Malus domestica HOM05D004017 ORTHO05D004612 7.1e-16 87.8 109 52.3
PRCOL_00002079 Prasinoderma coloniale HOM05D004017 ORTHO05D004612 1.3e-09 67.0 70 47.1
Cre07.g336650 Chlamydomonas reinhardtii HOM05D004017 ORTHO05D004612 8.4e-09 64.3 70 45.7
Ah.03g142840 Amaranthus hybridus HOM05D004017 ORTHO05D004612 9.3e-08 60.8 59 52.5
CBR_g57065 Chara braunii HOM05D004017 ORTHO05D004612 9.3e-08 60.8 62 46.8
MCO07G573 Micromonas commoda HOM05D004017 ORTHO05D004612 1.7e-06 56.6 64 46.9


User provided reference genes

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