Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G022740 Citrullus lanatus HOM05D005601 ORTHO05D007265 0.0e+00 1105.9 540 100.0
CsaV3_7G022950 Cucumis sativus L. HOM05D005601 ORTHO05D007265 3.6e-233 811.6 452 88.5
MELO3C012601.2 Cucumis melo HOM05D005601 ORTHO05D007265 1.0e-232 810.1 452 88.3
Sed0023216 Sechium edule HOM05D005601 ORTHO05D007265 3.6e-225 785.0 453 85.2
CiPaw.11G059700 Carya illinoinensis HOM05D005601 ORTHO05D007265 7.4e-186 654.4 458 69.2
QL09p016707 Quercus lobata HOM05D005601 ORTHO05D007265 5.3e-184 648.3 457 68.1
QL04p090699 Quercus lobata HOM05D005601 ORTHO05D007265 2.0e-183 646.4 457 67.8
Potri.010G172300 Populus trichocarpa HOM05D005601 ORTHO05D007265 1.7e-182 643.3 459 68.4
CANSAT56G2459 Cannabis sativa HOM05D005601 ORTHO05D007265 3.5e-180 635.6 452 69.0
Potri.008G084100 Populus trichocarpa HOM05D005601 ORTHO05D007265 7.9e-180 634.4 454 68.7
Dinv42472 Davidia involucrata HOM05D005601 ORTHO05D007265 5.1e-179 631.7 458 67.7
CSS0009872 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 1.4e-176 623.6 452 67.5
CSS0045419 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 2.4e-176 622.9 452 67.5
TWI38G0323 Tripterygium wilfordii HOM05D005601 ORTHO05D007265 5.3e-176 621.7 450 66.7
Manes.14G007400 Manihot esculenta HOM05D005601 ORTHO05D007265 1.4e-173 613.6 452 66.4
Peaxi162Scf00452g00334 Petunia axillaris HOM05D005601 ORTHO05D007265 1.4e-173 613.6 453 65.8
GSVIVG01020400001 Vitis vinifera HOM05D005601 ORTHO05D007265 1.2e-172 610.5 452 65.0
Sopen07g034790 Solanum pennellii HOM05D005601 ORTHO05D007265 4.6e-172 608.6 451 65.2
PGSC0003DMG400022116 Solanum tuberosum HOM05D005601 ORTHO05D007265 4.6e-172 608.6 452 65.5
Solyc07g066640.3 Solanum lycopersicum HOM05D005601 ORTHO05D007265 1.3e-171 607.1 451 65.0
Nitab4.5_0006109g0020 Nicotiana tabacum HOM05D005601 ORTHO05D007265 2.5e-170 602.8 451 64.7
CAN.G943.56 Capsicum annuum HOM05D005601 ORTHO05D007265 4.3e-170 602.1 455 64.0
Nitab4.5_0000029g0250 Nicotiana tabacum HOM05D005601 ORTHO05D007265 5.7e-170 601.7 440 65.5
Ciclev10006846m.g Citrus clementina HOM05D005601 ORTHO05D007265 9.7e-170 600.9 444 64.9
Eucgr.F04464 Eucalyptus grandis HOM05D005601 ORTHO05D007265 1.7e-169 600.1 452 65.9
Atru.chr1.81 Acer truncatum HOM05D005601 ORTHO05D007265 4.8e-169 598.6 455 64.0
vmacro11692 Vaccinium macrocarpon HOM05D005601 ORTHO05D007265 1.8e-168 596.7 508 59.6
MD05G1234300 Malus domestica HOM05D005601 ORTHO05D007265 6.9e-168 594.7 454 64.1
Sabra10G0131500 Salix brachista HOM05D005601 ORTHO05D007265 1.5e-167 593.6 459 64.3
Prupe.4G131800 Prunus persica HOM05D005601 ORTHO05D007265 2.0e-167 593.2 453 63.4
BcaC05g25587 Brassica carinata HOM05D005601 ORTHO05D007265 5.0e-166 588.6 457 61.9
C05p14450 Brassica napus HOM05D005601 ORTHO05D007265 5.0e-166 588.6 457 61.9
BolC5t30171H Brassica oleracea HOM05D005601 ORTHO05D007265 1.1e-165 587.4 457 61.9
BcaB02g06608 Brassica carinata HOM05D005601 ORTHO05D007265 2.5e-165 586.3 457 61.9
Migut.M01519 Erythranthe guttata HOM05D005601 ORTHO05D007265 2.5e-165 586.3 451 63.0
AT1G16290 Arabidopsis thaliana HOM05D005601 ORTHO05D007265 3.2e-165 585.9 456 61.2
Carub.0001s1603 Capsella rubella HOM05D005601 ORTHO05D007265 3.2e-165 585.9 456 62.1
FvH4_3g14650 Fragaria vesca HOM05D005601 ORTHO05D007265 5.5e-165 585.1 463 62.9
Rhsim06G0242900 Rhododendron simsii HOM05D005601 ORTHO05D007265 7.2e-165 584.7 518 58.3
Sp1g14480 Schrenkiella parvula HOM05D005601 ORTHO05D007583 7.2e-165 584.7 445 62.2
Lj2A13G19 Lonicera japonica HOM05D005601 ORTHO05D007265 9.4e-165 584.3 448 63.6
SGA_v2.0_scaffold7G03617 Striga asiatica HOM05D005601 ORTHO05D007265 1.2e-164 583.9 454 62.8
A06p12210 Brassica napus HOM05D005601 ORTHO05D007265 2.1e-164 583.2 457 61.5
BraA06t24389Z Brassica rapa HOM05D005601 ORTHO05D007265 2.1e-164 583.2 457 61.5
AL1G28410 Arabidopsis lyrata HOM05D005601 ORTHO05D007265 3.6e-164 582.4 456 61.8
RcHm_v2.0_Chr5g0024141 Rosa chinensis HOM05D005601 ORTHO05D007265 3.6e-164 582.4 458 63.1
Lj3g0011890 Lotus japonicus HOM05D005601 ORTHO05D007265 1.0e-163 580.9 453 62.9
FAN11G1412 Fragaria x ananassa HOM05D005601 ORTHO05D007265 3.0e-163 579.3 471 62.2
MD10G1210800 Malus domestica HOM05D005601 ORTHO05D007265 3.9e-163 578.9 463 61.3
Aa31LG7G820 Aethionema arabicum HOM05D005601 ORTHO05D007265 2.6e-162 576.2 457 61.9
PSO675G6728 Papaver somniferum HOM05D005601 ORTHO05D007265 3.1e-160 569.3 454 60.8
Aqoxy1G01411 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 9.1e-160 567.8 453 61.1
THA.LOC104812373 Tarenaya hassleriana HOM05D005601 ORTHO05D007265 1.2e-159 567.4 485 57.9
CARHR016760 Cardamine hirsuta HOM05D005601 ORTHO05D007265 2.0e-159 566.6 441 61.0
Thhalv10007775m.g Eutrema salsugineum HOM05D005601 ORTHO05D007265 7.7e-159 564.7 452 61.3
PGR031G2718 Punica granatum HOM05D005601 ORTHO05D007265 1.0e-158 564.3 479 59.9
Thecc.07G184900 Theobroma cacao HOM05D005601 ORTHO05D007265 2.2e-158 563.1 452 60.8
MSTRG.7080 Avicennia marina HOM05D005601 ORTHO05D007265 2.9e-158 562.8 454 61.5
Lalb_Chr25g0284511 Lupinus albus HOM05D005601 ORTHO05D007265 3.9e-155 552.4 452 60.6
Nn7g38204 Nelumbo nucifera HOM05D005601 ORTHO05D007265 5.7e-154 548.5 452 58.4
Psat1g014320 Pisum sativum HOM05D005601 ORTHO05D007265 7.4e-154 548.1 452 59.5
SalBow8G4673 Salvia bowleyana HOM05D005601 ORTHO05D007265 2.2e-153 546.6 438 60.5
TAR627G0482 Trochodendron aralioides HOM05D005601 ORTHO05D007265 1.1e-152 544.3 400 65.0
Gorai.002G109700 Gossypium raimondii HOM05D005601 ORTHO05D007265 2.4e-152 543.1 452 59.3
Sc09g0007790 Simmondsia chinensis HOM05D005601 ORTHO05D007265 2.4e-152 543.1 453 59.6
DCAR_016842 Daucus carota HOM05D005601 ORTHO05D000532 1.5e-149 533.9 461 58.1
Gohir.A13G125400 Gossypium hirsutum HOM05D005601 ORTHO05D007265 7.2e-149 531.6 465 55.7
Lalb_Chr20g0108481 Lupinus albus HOM05D005601 ORTHO05D007265 1.0e-147 527.7 452 58.2
Gorai.013G145200 Gossypium raimondii HOM05D005601 ORTHO05D007265 3.0e-147 526.2 452 56.4
Gohir.D13G129200 Gossypium hirsutum HOM05D005601 ORTHO05D007265 5.7e-146 521.9 452 56.0
TPR.G22999 Trifolium pratense HOM05D005601 ORTHO05D007265 1.3e-145 520.8 457 56.5
Aqoxy72s008 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 1.2e-143 514.2 441 57.8
Oeu019720.3 Olea europaea HOM05D005601 ORTHO05D007265 7.2e-141 505.0 453 57.0
FAN21G2538 Fragaria x ananassa HOM05D005601 ORTHO05D007265 1.8e-139 500.4 458 55.7
Cc05_g16460 Coffea canephora HOM05D005601 ORTHO05D007265 1.3e-137 494.2 376 66.5
Zm00001eb207280 Zea mays HOM05D005601 ORTHO05D007265 2.8e-137 493.0 452 53.8
Glyma.08G165100 Glycine max HOM05D005601 ORTHO05D007265 1.6e-135 487.3 454 56.2
FAN16G1778 Fragaria x ananassa HOM05D005601 ORTHO05D007265 1.0e-134 484.6 458 54.6
Ca_03553_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 4.0e-131 472.6 453 54.5
Ca_29556_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 4.0e-131 472.6 453 54.5
arahy.Tifrunner.gnm1.ann1.5WL8RC Arachis hypogaea HOM05D005601 ORTHO05D007265 3.7e-129 466.1 406 55.9
Sabra08G0062400 Salix brachista HOM05D005601 ORTHO05D007265 1.3e-126 457.6 495 52.5
MBI02_g08257_MAGBIO Magnolia biondii HOM05D005601 ORTHO05D007265 8.6e-126 454.9 374 58.8
SMO196G0059 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 5.2e-123 445.7 432 49.5
SMO137G0068 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 3.2e-120 436.4 455 45.5
Gohir.D01G084000 Gossypium hirsutum HOM05D005601 ORTHO05D007265 3.6e-116 422.9 375 58.1
Gohir.A01G099600 Gossypium hirsutum HOM05D005601 ORTHO05D007265 5.2e-115 419.1 361 57.6
Mapoly0008s0010 Marchantia polymorpha HOM05D005601 ORTHO05D007265 2.3e-110 403.7 467 42.6
Pp3c5_22590 Physcomitrium patens HOM05D005601 ORTHO05D007265 6.4e-105 385.6 496 41.7
CBR_g32054 Chara braunii HOM05D005601 ORTHO05D007265 4.6e-103 379.4 433 41.8
AagrBONN_evm.TU.Sc2ySwM_117.1218 Anthoceros agrestis HOM05D005601 ORTHO05D007265 9.5e-101 371.7 466 40.8
Dinv19582 Davidia involucrata HOM05D005601 ORTHO05D007265 7.1e-88 328.9 203 74.9
Haze_07789 Corylus avellana HOM05D005601 ORTHO05D007265 2.3e-86 323.9 190 81.1
unitig_26.g10063 Utricularia gibba HOM05D005601 ORTHO05D007265 1.6e-84 317.8 276 57.6
SMO170G0006 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 2.2e-81 307.4 407 39.3
Oeu034984.1 Olea europaea HOM05D005601 ORTHO05D007265 4.2e-80 303.1 218 67.9
Dinv19583 Davidia involucrata HOM05D005601 ORTHO05D007265 2.5e-72 277.3 187 70.6
HPP92_016685 Vanilla planifolia HOM05D005601 ORTHO05D007265 1.9e-64 251.1 183 61.7
Actinidia24664 Actinidia chinensis HOM05D005601 ORTHO05D007265 2.5e-64 250.8 186 64.5
HPP92_016686 Vanilla planifolia HOM05D005601 ORTHO05D007265 1.4e-54 218.4 159 61.6
ATR0752G040 Amborella trichopoda HOM05D005601 ORTHO05D007265 2.1e-47 194.5 147 55.1
Sabra07G0054400 Salix brachista HOM05D005601 ORTHO05D007265 6.1e-47 193.0 146 67.8
Sabra07G0054100 Salix brachista HOM05D005601 ORTHO05D007265 2.3e-46 191.0 146 67.1
Sabra07G0054700 Salix brachista HOM05D005601 ORTHO05D007265 6.7e-46 189.5 146 66.4
Sabra07G0055500 Salix brachista HOM05D005601 ORTHO05D007265 1.1e-45 188.7 172 59.9
arahy.Tifrunner.gnm1.ann1.4IME1R Arachis hypogaea HOM05D005601 ORTHO05D007265 6.3e-44 183.0 152 57.9
CSS0035233 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 2.6e-42 177.6 106 77.4
ATR0752G225 Amborella trichopoda HOM05D005601 ORTHO05D007265 7.7e-42 176.0 123 66.7
Sabra07G0055700 Salix brachista HOM05D005601 ORTHO05D007265 1.4e-40 171.8 127 70.9
Aqoxy4G01783 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 1.5e-37 161.8 110 70.0
Aqoxy5G02624 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 5.7e-37 159.8 114 68.4
unitig_26.g10062 Utricularia gibba HOM05D000493 ORTHO05D008479 2.2e-36 157.9 101 70.3
SEGI_07478 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 2.8e-36 157.5 120 60.8
Cc01_g09470 Coffea canephora HOM05D005601 ORTHO05D007265 1.4e-30 138.7 88 71.6
Sabra07G0055000 Salix brachista HOM05D005601 ORTHO05D007265 2.6e-29 134.4 86 74.4
Cpa.g.sc32.54 Carica papaya HOM05D005601 ORTHO05D007265 1.7e-28 131.7 110 59.1
SHI32865 Sapria himalayana HOM05D005601 ORTHO05D007265 6.3e-28 129.8 83 72.3
SEGI_07505 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 9.1e-27 125.9 111 50.5
Cc05_g16470 Coffea canephora HOM05D005601 ORTHO05D007265 2.0e-26 124.8 83 67.5
SEGI_03880 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 2.5e-24 117.9 80 58.8
SEGI_02544 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 3.0e-22 110.9 88 56.8
SHI32862 Sapria himalayana HOM05D005601 ORTHO05D007265 8.8e-22 109.4 62 74.2
Zm00001eb338130 Zea mays HOM05D005601 ORTHO05D007265 7.5e-21 106.3 144 41.7
Medtr2g065540 Medicago truncatula HOM05D005601 ORTHO05D007265 9.8e-21 105.9 59 74.6
PRCOL_00003152 Prasinoderma coloniale HOM05D005601 ORTHO05D007265 7.2e-16 89.7 210 27.6
ATR0752G173 Amborella trichopoda HOM05D005601 ORTHO05D007265 1.6e-15 88.6 54 68.5
SHI32867 Sapria himalayana HOM05D005601 ORTHO05D007265 2.8e-15 87.8 93 45.2
Zm00001eb249880 Zea mays HOM05D005601 ORTHO05D007265 3.7e-12 77.4 52 59.6
SHI32866 Sapria himalayana HOM05D005601 ORTHO05D007265 1.4e-11 75.5 52 71.2
Zm00001eb234590 Zea mays HOM05D000076 ORTHO05D007265 1.0e-09 69.3 42 69.0
Zm00001eb316750 Zea mays HOM05D000076 ORTHO05D001279 5.0e-09 67.0 42 66.7
BraA06t24405Z Brassica rapa HOM05D005601 ORTHO05D007265 1.5e-08 65.5 102 38.2
Cpa.g.sc32.60 Carica papaya HOM05D005601 ORTHO05D000047 1.5e-08 65.5 44 65.9
BcaC05g25566 Brassica carinata HOM05D005601 ORTHO05D007265 4.3e-08 63.9 103 37.9
A06p12420 Brassica napus HOM05D005601 ORTHO05D007265 5.6e-08 63.5 102 37.3
HPP92_016689 Vanilla planifolia HOM05D005601 ORTHO05D007265 6.1e-07 60.1 37 64.9


User provided reference genes

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