Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G022400 Citrullus lanatus HOM05D006973 ORTHO05D008636 5.9e-62 240.7 126 100.0
CsaV3_6G038070 Cucumis sativus L. HOM05D006973 ORTHO05D008636 4.6e-54 214.5 126 90.5
MELO3C014471.2 Cucumis melo HOM05D006973 ORTHO05D008636 1.5e-52 209.5 127 89.8
Sed0009997 Sechium edule HOM05D006973 ORTHO05D008636 9.9e-33 143.7 128 69.5
RcHm_v2.0_Chr2g0151491 Rosa chinensis HOM05D006973 ORTHO05D008636 2.5e-20 102.4 140 50.7
FAN02G1229 Fragaria x ananassa HOM05D006973 ORTHO05D008636 5.6e-20 101.3 137 48.9
FvH4_6g38230 Fragaria vesca HOM05D006973 ORTHO05D008636 2.1e-19 99.4 137 48.2
FAN14G5571 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.1e-19 99.4 137 48.2
Glyma.02G286900 Glycine max HOM05D006973 ORTHO05D008636 2.1e-19 99.4 104 57.7
Cfa021245 Carpinus fangiana HOM05D006973 ORTHO05D008636 6.2e-19 97.8 68 76.5
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 6.2e-19 97.8 118 51.7
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 8.1e-19 97.4 133 46.6
Haze_13497 Corylus avellana HOM05D006973 ORTHO05D008636 1.8e-18 96.3 64 78.1
Phvul.008G191400 Phaseolus vulgaris HOM05D006973 ORTHO05D008636 3.1e-18 95.5 65 72.3
Prupe.3G172700 Prunus persica HOM05D006973 ORTHO05D008636 3.1e-18 95.5 143 48.3
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 4.0e-18 95.1 147 45.6
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 5.3e-18 94.7 96 56.2
VMungo0647G1950 Vigna mungo HOM05D006973 ORTHO05D008636 5.3e-18 94.7 108 50.9
Manes.02G084300 Manihot esculenta HOM05D006973 ORTHO05D008636 6.9e-18 94.4 126 49.2
Glyma.14G028000 Glycine max HOM05D006973 ORTHO05D008636 9.0e-18 94.0 103 52.4
QL08p044096 Quercus lobata HOM05D006973 ORTHO05D008636 1.2e-17 93.6 138 44.9
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.5e-17 93.2 139 46.8
Duzib187G1733 Durio zibethinus HOM05D006973 ORTHO05D008636 2.0e-17 92.8 116 52.6
FAN09G4519 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.0e-17 92.8 127 47.2
Medtr5g091690 Medicago truncatula HOM05D006973 ORTHO05D008636 4.4e-17 91.7 66 68.2
Duzib147G0021 Durio zibethinus HOM05D006973 ORTHO05D008636 2.2e-16 89.4 122 48.4
LjContig00310g0018130 Lotus japonicus HOM05D006973 ORTHO05D008636 2.2e-16 89.4 61 73.8
Potri.005G201500 Populus trichocarpa HOM05D006973 ORTHO05D008636 2.2e-16 89.4 125 48.8
Thecc.01G161800 Theobroma cacao HOM05D006973 ORTHO05D008636 2.9e-16 89.0 140 46.4
TPR.G12665 Trifolium pratense HOM05D006973 ORTHO05D008636 3.8e-16 88.6 64 67.2
Lalb_Chr17g0348291 Lupinus albus HOM05D006973 ORTHO05D008636 4.9e-16 88.2 68 64.7
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 4.9e-16 88.2 66 66.7
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 4.9e-16 88.2 66 66.7
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 2.4e-15 85.9 66 65.2
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 2.4e-15 85.9 107 48.6
Lalb_Chr04g0248771 Lupinus albus HOM05D006973 ORTHO05D008636 3.2e-15 85.5 135 43.7
PGR042G1786 Punica granatum HOM05D006973 ORTHO05D008636 4.2e-15 85.1 58 74.1
Nitab4.5_0001675g0100 Nicotiana tabacum HOM05D006973 ORTHO05D008636 5.4e-15 84.7 100 50.0
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 7.1e-15 84.3 69 62.3
Oeu020059.1 Olea europaea HOM05D006973 ORTHO05D008636 9.3e-15 84.0 69 63.8
Actinidia32515 Actinidia chinensis HOM05D006973 ORTHO05D008636 1.6e-14 83.2 64 67.2
Rhsim06G0116300 Rhododendron simsii HOM05D006973 ORTHO05D008636 2.1e-14 82.8 124 47.6
Ciclev10033026m.g Citrus clementina HOM05D006973 ORTHO05D008636 3.5e-14 82.0 65 63.1
Gohir.A11G060500 Gossypium hirsutum HOM05D006973 ORTHO05D008636 3.5e-14 82.0 131 42.0
A03p23820 Brassica napus HOM05D006973 ORTHO05D008636 7.9e-14 80.9 122 41.0
BraA03t11597Z Brassica rapa HOM05D006973 ORTHO05D008636 7.9e-14 80.9 122 41.0
CAN.G585.39 Capsicum annuum HOM05D006973 ORTHO05D008636 7.9e-14 80.9 64 67.2
CANSAT64G0305 Cannabis sativa HOM05D006973 ORTHO05D008636 1.3e-13 80.1 60 71.7
Lalb_Chr10g0106711 Lupinus albus HOM05D006973 ORTHO05D008636 1.3e-13 80.1 61 62.3
BcaC02g07217 Brassica carinata HOM05D006973 ORTHO05D008636 2.3e-13 79.3 120 39.2
A04p32440 Brassica napus HOM05D006973 ORTHO05D008636 2.3e-13 79.3 120 39.2
C04p69950 Brassica napus HOM05D006973 ORTHO05D008636 2.3e-13 79.3 120 39.2
BolC4t28495H Brassica oleracea HOM05D006973 ORTHO05D008636 2.3e-13 79.3 120 39.2
BraA04t18696Z Brassica rapa HOM05D006973 ORTHO05D008636 2.3e-13 79.3 120 39.2
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 2.3e-13 79.3 64 64.1
DCAR_013315 Daucus carota HOM05D006973 ORTHO05D008636 3.0e-13 79.0 117 45.3
Atru.chr6.2093 Acer truncatum HOM05D006973 ORTHO05D008636 5.1e-13 78.2 61 62.3
Gohir.D11G064600 Gossypium hirsutum HOM05D006973 ORTHO05D008636 5.1e-13 78.2 133 42.1
Aqoxy4G00147 Aquilegia oxysepala HOM05D006973 ORTHO05D008636 6.6e-13 77.8 94 44.7
Carub.0004s2531 Capsella rubella HOM05D006973 ORTHO05D008636 6.6e-13 77.8 119 38.7
Gorai.007G069800 Gossypium raimondii HOM05D006973 ORTHO05D008636 6.6e-13 77.8 134 41.8
BraA05t19306Z Brassica rapa HOM05D006973 ORTHO05D008636 8.7e-13 77.4 115 40.0
PGSC0003DMG400017344 Solanum tuberosum HOM05D006973 ORTHO05D008636 8.7e-13 77.4 61 63.9
BcaB06g29268 Brassica carinata HOM05D006973 ORTHO05D008636 1.1e-12 77.0 120 38.3
BcaB06g29270 Brassica carinata HOM05D006973 ORTHO05D008636 1.1e-12 77.0 120 38.3
Thhalv10006323m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 1.1e-12 77.0 120 41.7
BcaB02g08235 Brassica carinata HOM05D006973 ORTHO05D008636 1.9e-12 76.3 123 43.9
Solyc07g056360.1 Solanum lycopersicum HOM05D006973 ORTHO05D008636 1.9e-12 76.3 61 60.7
MSTRG.14293 Avicennia marina HOM05D006973 ORTHO05D008636 2.5e-12 75.9 99 49.5
A05p03160 Brassica napus HOM05D006973 ORTHO05D008636 2.5e-12 75.9 115 40.0
BcaC02g12446 Brassica carinata HOM05D006973 ORTHO05D008636 3.3e-12 75.5 116 41.4
BolC4t22017H Brassica oleracea HOM05D006973 ORTHO05D008636 3.3e-12 75.5 116 41.4
Cc05_g09430 Coffea canephora HOM05D006973 ORTHO05D008636 3.3e-12 75.5 94 51.1
Oeu040038.1 Olea europaea HOM05D006973 ORTHO05D008636 3.3e-12 75.5 120 40.8
C04p03810 Brassica napus HOM05D006973 ORTHO05D008636 4.3e-12 75.1 116 41.4
Carub.0005s2563 Capsella rubella HOM05D006973 ORTHO05D008636 4.3e-12 75.1 61 62.3
Sopen07g029740 Solanum pennellii HOM05D006973 ORTHO05D008636 4.3e-12 75.1 61 59.0
A04p02340 Brassica napus HOM05D006973 ORTHO05D008636 5.6e-12 74.7 124 42.7
C04p33710 Brassica napus HOM05D006973 ORTHO05D008636 5.6e-12 74.7 127 42.5
Sp5g04010 Schrenkiella parvula HOM05D006973 ORTHO05D008636 9.6e-12 73.9 121 39.7
AT3G58850 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 1.3e-11 73.6 63 58.7
C03p28410 Brassica napus HOM05D006973 ORTHO05D008636 1.3e-11 73.6 122 39.3
BolC3t15210H Brassica oleracea HOM05D006973 ORTHO05D008636 1.3e-11 73.6 122 39.3
BraA04t15963Z Brassica rapa HOM05D006973 ORTHO05D008636 1.3e-11 73.6 124 41.9
CSS0041461 Camellia sinensis var. sinensis HOM05D006973 ORTHO05D008636 1.3e-11 73.6 66 59.1
BcaC02g10032 Brassica carinata HOM05D006973 ORTHO05D008636 1.6e-11 73.2 124 41.9
BolC4t24939H Brassica oleracea HOM05D006973 ORTHO05D008636 1.6e-11 73.2 124 41.9
Thhalv10017430m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 2.8e-11 72.4 61 57.4
CARHR137940 Cardamine hirsuta HOM05D006973 ORTHO05D008636 1.1e-10 70.5 121 39.7
BcaC07g40229 Brassica carinata HOM05D006973 ORTHO05D008636 1.8e-10 69.7 114 40.4
Aa31LG1G24640 Aethionema arabicum HOM05D006973 ORTHO05D008636 2.4e-10 69.3 116 37.1
A09p51360 Brassica napus HOM05D006973 ORTHO05D008636 2.4e-10 69.3 97 45.4
Sp4g25000 Schrenkiella parvula HOM05D006973 ORTHO05D008636 2.4e-10 69.3 100 40.0
CARHR169260 Cardamine hirsuta HOM05D006973 ORTHO05D008636 3.1e-10 68.9 124 37.9
AL4G41480 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 5.3e-10 68.2 118 39.8
AL713U10010 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 5.3e-10 68.2 118 39.8
BraA09t40577Z Brassica rapa HOM05D006973 ORTHO05D008636 5.3e-10 68.2 97 44.3
AL5G40650 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 6.9e-10 67.8 121 39.7
BcaB01g03419 Brassica carinata HOM05D006973 ORTHO05D008636 2.0e-09 66.2 122 36.9
AT2G42870 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 3.4e-09 65.5 118 38.1
MBI10_g03529_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 3.4e-09 65.5 54 57.4
BcaC07g40299 Brassica carinata HOM05D006973 ORTHO05D008636 5.8e-09 64.7 112 40.2
C08p34140 Brassica napus HOM05D006973 ORTHO05D008636 5.8e-09 64.7 112 40.2
BolC8t51013H Brassica oleracea HOM05D006973 ORTHO05D008636 5.8e-09 64.7 112 40.2
arahy.Tifrunner.gnm1.ann1.9T2B0R Arachis hypogaea HOM05D006973 ORTHO05D008636 2.2e-08 62.8 53 58.5
Aa31LG10G13410 Aethionema arabicum HOM05D006973 ORTHO05D008636 3.8e-08 62.0 118 39.0
arahy.Tifrunner.gnm1.ann1.D7Q1BT Arachis hypogaea HOM05D006973 ORTHO05D008636 3.8e-08 62.0 54 55.6
arahy.Tifrunner.gnm1.ann1.SG1KTY Arachis hypogaea HOM05D006973 ORTHO05D008636 3.8e-08 62.0 54 55.6
THA.LOC104803237 Tarenaya hassleriana HOM05D006973 ORTHO05D008636 3.8e-08 62.0 59 50.8
CDE04G0049 Ceratophyllum demersum HOM05D006973 ORTHO05D008636 4.9e-08 61.6 64 43.8
HPP92_024628 Vanilla planifolia HOM05D006973 ORTHO05D008636 2.4e-07 59.3 65 43.1
Eucgr.A01970 Eucalyptus grandis HOM05D006973 ORTHO05D008636 7.1e-07 57.8 69 52.2
SEGI_09603 Sequoiadendron giganteum HOM05D001624 ORTHO05D008636 7.1e-07 57.8 91 39.6
SalBow3G4324 Salvia bowleyana HOM05D006547 ORTHO05D008112 2.1e-06 56.2 58 43.1
SEGI_27334 Sequoiadendron giganteum HOM05D001624 ORTHO05D008636 2.7e-06 55.8 49 55.1
Lsat_1_v5_gn_3_47940 Lactuca sativa HOM05D008443 ORTHO05D010587 7.9e-06 54.3 50 48.0
MBI19_g03260_MAGBIO Magnolia biondii HOM05D001624 ORTHO05D001530 7.9e-06 54.3 48 52.1
Nn3g16936 Nelumbo nucifera HOM05D008443 ORTHO05D010587 7.9e-06 54.3 53 45.3
Nn4g25552 Nelumbo nucifera HOM05D006547 ORTHO05D008112 7.9e-06 54.3 46 52.2


User provided reference genes

Program Settings