Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 0.0e+00 2491.1 1480 100.0
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 0.0e+00 1946.8 1513 81.6
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 0.0e+00 1913.7 1508 80.9
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 0.0e+00 1781.9 1490 76.7
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 0.0e+00 1162.9 1522 54.1
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 0.0e+00 1147.5 1536 54.0
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 0.0e+00 1146.7 1599 53.2
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 0.0e+00 1134.8 1507 52.7
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 0.0e+00 1128.6 1542 52.7
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 0.0e+00 1090.9 1521 52.3
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 0.0e+00 1083.6 1564 51.7
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 0.0e+00 1081.6 1464 53.1
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 0.0e+00 1079.3 1532 52.5
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 3.4e-310 1068.9 1507 50.4
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 3.4e-310 1068.9 1517 51.1
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 1.1e-308 1063.9 1507 51.7
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 4.2e-308 1062.0 1513 51.7
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 5.5e-308 1061.6 1507 51.6
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 1.8e-306 1056.6 1521 51.0
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 8.8e-306 1054.3 1507 51.2
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 2.5e-305 1052.7 1503 51.2
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 9.7e-305 1050.8 1433 53.1
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 9.7e-305 1050.8 1506 51.4
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 1.4e-303 1047.0 1569 52.3
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 4.5e-302 1042.0 1521 50.2
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 6.7e-298 1028.1 1532 50.3
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 4.4e-297 1025.4 1555 48.3
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 1.3e-296 1023.8 1503 51.5
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 5.3e-295 1018.5 1534 50.1
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 1.0e-293 1014.2 1511 51.4
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 1.7e-293 1013.4 1521 50.6
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 3.2e-292 1009.2 1512 51.5
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 3.5e-286 989.2 1594 48.4
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 4.5e-286 988.8 1575 48.1
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 5.9e-286 988.4 1528 49.7
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 2.0e-281 973.4 1572 49.0
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 6.5e-277 958.4 1567 48.4
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 6.5e-277 958.4 1525 48.3
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 2.5e-276 956.4 1532 49.9
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 6.8e-274 948.3 1580 48.9
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 2.6e-273 946.4 1534 48.2
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 2.7e-270 936.4 1625 45.5
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 3.5e-270 936.0 1555 45.5
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 9.5e-268 927.9 1527 46.3
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 4.7e-267 925.6 1609 45.6
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 1.5e-265 920.6 1524 46.9
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 2.1e-259 900.2 1505 45.0
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 5.2e-258 895.6 1501 49.2
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 6.8e-258 895.2 1526 46.2
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 8.9e-258 894.8 1537 47.3
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 2.9e-256 889.8 1526 47.2
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 5.4e-255 885.6 1551 45.3
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 6.2e-251 872.1 1485 46.8
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 7.3e-244 848.6 1533 44.6
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 9.5e-244 848.2 1487 46.4
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 1.4e-242 844.3 732 67.9
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 9.9e-241 838.2 1538 46.7
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 3.2e-239 833.2 1535 44.4
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 4.1e-239 832.8 1233 50.5
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 5.4e-239 832.4 1581 44.5
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 3.3e-236 823.2 1770 40.2
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 4.3e-236 822.8 1501 42.3
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 3.6e-235 819.7 1335 47.3
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 4.9e-232 809.3 1533 44.4
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 1.4e-231 807.7 1550 43.6
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 2.4e-231 807.0 1542 43.6
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 7.3e-228 795.4 1533 41.9
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 7.3e-228 795.4 1421 44.4
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 3.6e-227 793.1 1563 43.0
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 1.2e-225 788.1 1519 44.4
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 5.4e-223 779.2 1510 44.5
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 7.1e-223 778.9 1542 44.4
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 6.6e-221 772.3 1510 44.8
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 2.8e-219 766.9 1506 46.6
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 2.1e-211 740.7 1504 44.8
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 2.9e-208 730.3 1523 42.7
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 2.9e-208 730.3 1518 41.3
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 2.9e-208 730.3 1550 41.1
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 3.8e-208 729.9 1318 43.6
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 4.9e-208 729.6 1526 42.4
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 4.6e-206 723.0 1551 41.1
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 2.1e-198 697.6 1495 42.7
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 1.8e-197 694.5 1501 42.7
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 2.3e-197 694.1 1505 42.7
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 2.3e-197 694.1 1505 42.7
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 1.9e-196 691.0 1269 44.4
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 9.7e-196 688.7 1506 42.7
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 1.8e-194 684.5 1508 43.0
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 1.5e-193 681.4 1478 41.6
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 1.1e-188 665.2 1597 38.9
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 2.6e-188 664.1 1505 38.9
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 2.8e-187 660.6 1092 45.1
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 3.1e-186 657.1 1523 41.7
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 8.5e-184 649.0 1512 39.7
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 7.0e-178 629.4 1458 42.5
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.8e-162 578.2 597 61.5
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 2.4e-154 551.2 1498 39.2
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 1.3e-152 545.4 1603 35.7
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 2.3e-149 534.6 1425 34.7
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 2.3e-149 534.6 1240 35.3
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 2.2e-147 528.1 1294 38.6
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 6.6e-136 490.0 1359 36.5
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 1.9e-135 488.4 761 47.3
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 4.0e-125 454.1 1551 36.0
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.2e-121 442.6 636 46.4
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 4.0e-109 401.0 1393 32.4
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 4.9e-91 340.9 1461 31.0
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 2.0e-68 265.8 867 34.5
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 1.7e-67 262.7 471 50.5
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 1.4e-61 243.0 806 32.6
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 1.6e-60 239.6 666 33.6
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 2.5e-58 232.3 714 31.1
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 3.2e-58 231.9 280 41.8
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 8.8e-56 223.8 1557 24.7
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 2.3e-48 199.1 1036 24.7
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 1.9e-42 179.5 278 43.9
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 2.0e-39 169.5 510 37.5
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 1.9e-34 152.9 215 41.4
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 2.1e-33 149.4 228 51.3
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 6.1e-33 147.9 468 41.5
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 1.0e-32 147.1 92 72.8
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 3.4e-31 142.1 217 47.9
Lj3A852T53 Lonicera japonica HOM05D004594 ORTHO05D005225 4.7e-25 121.7 154 52.6
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 1.7e-22 113.2 528 30.7
TPR.G11445 Trifolium pratense HOM05D004594 ORTHO05D005225 1.7e-22 113.2 64 85.9
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 1.1e-21 110.5 102 52.0
Actinidia04099 Actinidia chinensis HOM05D004594 ORTHO05D005225 3.2e-21 109.0 257 40.5
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 6.0e-20 104.8 87 63.2
Gohir.1Z049616 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.7e-19 103.2 316 44.0
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 2.1e-17 96.3 92 53.3
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 3.1e-16 92.4 500 33.6
Lsat_1_v5_gn_1_53021 Lactuca sativa HOM05D004594 ORTHO05D005225 5.2e-16 91.7 61 63.9
MBI02_g24140_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.4e-13 83.6 132 47.0
QL03p068420 Quercus lobata HOM05D004594 ORTHO05D005225 5.4e-13 81.6 276 31.9
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 7.1e-13 81.3 50 72.0
SHI24778 Sapria himalayana HOM05D004594 ORTHO05D005225 2.1e-12 79.7 53 71.7
A02p33250 Brassica napus HOM05D004594 ORTHO05D005225 3.5e-12 79.0 79 51.9
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 8.6e-11 74.3 50 62.0
Oeu052406.1 Olea europaea HOM05D004594 ORTHO05D005225 1.5e-10 73.6 105 47.6
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 4.3e-10 72.0 232 25.4
BraA02t08348Z Brassica rapa HOM05D004594 ORTHO05D005225 5.6e-10 71.6 105 37.1
MBI07_g23220_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 8.9e-08 64.3 94 42.6
CBR_g5749 Chara braunii HOM05D004594 ORTHO05D005225 1.2e-07 63.9 345 28.7
RcHm_v2.0_Chr3g0458311 Rosa chinensis HOM05D004594 ORTHO05D005225 4.4e-07 62.0 88 40.9
RcHm_v2.0_Chr7g0218771 Rosa chinensis HOM05D004594 ORTHO05D005225 9.9e-07 60.8 89 40.4
HPP92_001999 Vanilla planifolia HOM05D004594 ORTHO05D005225 1.3e-06 60.5 38 65.8
QL03p068414 Quercus lobata HOM05D004594 ORTHO05D005225 3.8e-06 58.9 57 52.6


User provided reference genes

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