Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 2.1e-117 425.6 206 100.0
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 1.3e-85 320.1 205 75.6
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 1.0e-82 310.5 203 74.4
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 1.4e-44 183.7 186 47.3
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 1.8e-44 183.3 186 48.4
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 2.4e-44 183.0 191 48.7
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 7.0e-44 181.4 202 44.1
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 2.7e-43 179.5 186 46.8
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 2.7e-43 179.5 186 46.8
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 3.5e-43 179.1 186 45.7
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 3.5e-43 179.1 186 45.7
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 3.5e-43 179.1 186 46.8
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 7.7e-43 177.9 191 46.1
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 1.3e-42 177.2 186 46.8
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 1.7e-42 176.8 186 46.2
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 1.7e-42 176.8 188 47.9
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 2.2e-42 176.4 183 47.0
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 2.2e-42 176.4 185 45.9
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 2.9e-42 176.0 191 46.1
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 6.5e-42 174.9 183 44.8
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 1.5e-41 173.7 185 44.3
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.5e-41 173.7 186 45.2
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 1.9e-41 173.3 186 46.2
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 1.9e-41 173.3 185 44.3
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 2.5e-41 172.9 185 44.3
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 2.5e-41 172.9 183 45.4
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 3.2e-41 172.6 197 42.6
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 9.4e-41 171.0 185 43.8
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 9.4e-41 171.0 185 43.8
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 9.4e-41 171.0 183 43.2
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 1.2e-40 170.6 185 43.8
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 1.6e-40 170.2 185 43.8
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 4.7e-40 168.7 185 43.2
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 4.7e-40 168.7 185 43.2
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 6.1e-40 168.3 188 45.7
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 6.1e-40 168.3 186 45.7
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 1.4e-39 167.2 185 43.2
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 1.8e-39 166.8 183 43.2
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 4.0e-39 165.6 186 43.0
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 5.2e-39 165.2 185 42.7
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 6.8e-39 164.9 185 43.2
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 6.8e-39 164.9 196 42.9
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 6.8e-39 164.9 186 44.1
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 6.8e-39 164.9 186 44.1
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 6.8e-39 164.9 186 44.1
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.2e-38 164.1 185 43.8
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.2e-38 164.1 183 42.6
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 1.5e-38 163.7 186 43.5
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 2.6e-38 162.9 183 44.8
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 2.6e-38 162.9 184 42.4
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 2.6e-38 162.9 183 42.6
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 2.6e-38 162.9 183 42.6
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 4.4e-38 162.2 192 42.2
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 9.8e-38 161.0 185 43.2
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 1.3e-37 160.6 185 42.7
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 1.7e-37 160.2 185 43.2
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 1.7e-37 160.2 183 43.2
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 1.7e-37 160.2 184 42.9
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 2.2e-37 159.8 183 43.2
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 2.8e-37 159.5 184 43.5
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 2.8e-37 159.5 185 42.7
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 2.8e-37 159.5 185 42.7
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 2.8e-37 159.5 185 42.7
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 2.8e-37 159.5 183 40.4
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 3.7e-37 159.1 186 42.5
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 3.7e-37 159.1 194 40.7
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 6.3e-37 158.3 190 42.6
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 6.3e-37 158.3 185 42.7
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 6.3e-37 158.3 188 41.0
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 1.1e-36 157.5 190 42.1
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 1.4e-36 157.1 194 43.8
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 1.8e-36 156.8 185 40.5
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 4.1e-36 155.6 186 42.5
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 5.4e-36 155.2 173 40.5
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 5.4e-36 155.2 205 41.5
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.6e-35 153.7 191 42.4
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 2.0e-35 153.3 204 41.2
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 4.5e-35 152.1 205 41.0
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 5.9e-35 151.8 196 40.3
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 7.7e-35 151.4 195 36.4
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 2.3e-34 149.8 183 41.0
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 6.5e-34 148.3 157 45.2
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 6.5e-34 148.3 184 40.8
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.5e-33 147.1 208 40.4
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 1.9e-33 146.7 161 43.5
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 4.2e-33 145.6 184 38.6
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 4.2e-33 145.6 189 38.1
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 4.2e-33 145.6 188 36.2
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 4.2e-33 145.6 200 38.0
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 4.2e-33 145.6 221 34.4
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 7.2e-33 144.8 183 37.7
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 7.2e-33 144.8 179 41.9
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 7.2e-33 144.8 197 37.6
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 9.5e-33 144.4 190 38.4
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 1.2e-32 144.1 183 36.6
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 1.6e-32 143.7 199 40.7
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 2.8e-32 142.9 190 38.9
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 2.8e-32 142.9 186 39.2
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 4.7e-32 142.1 195 37.4
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 6.1e-32 141.7 183 36.1
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 6.1e-32 141.7 191 37.2
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 6.1e-32 141.7 185 38.9
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 1.0e-31 141.0 192 38.0
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 1.4e-31 140.6 193 40.9
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 1.4e-31 140.6 189 38.6
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 2.3e-31 139.8 127 50.4
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 3.0e-31 139.4 179 40.8
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 4.0e-31 139.0 151 42.4
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 4.0e-31 139.0 200 37.5
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 6.8e-31 138.3 185 37.8
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 6.8e-31 138.3 218 34.9
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 8.9e-31 137.9 196 37.8
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.0e-30 136.7 193 37.8
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 2.6e-30 136.3 168 42.9
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 7.5e-30 134.8 150 40.0
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 2.2e-29 133.3 127 48.0
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 2.8e-29 132.9 147 44.2
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 4.9e-29 132.1 192 37.5
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 4.9e-29 132.1 176 36.9
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 1.8e-28 130.2 155 41.9
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 2.4e-28 129.8 195 39.5
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 7.0e-28 128.3 194 36.1
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 9.2e-28 127.9 223 35.0
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 1.2e-27 127.5 147 42.9
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 1.2e-27 127.5 146 43.2
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 1.2e-27 127.5 190 38.9
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 2.0e-27 126.7 177 37.9
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 5.9e-27 125.2 205 37.6
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 7.8e-27 124.8 195 33.8
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 1.7e-26 123.6 146 41.8
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 2.9e-26 122.9 202 32.2
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 6.6e-26 121.7 199 35.7
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 2.5e-25 119.8 130 42.3
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 9.5e-25 117.9 182 36.8
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 2.1e-24 116.7 137 41.6
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 1.8e-23 113.6 137 40.9
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 3.0e-23 112.8 187 34.2
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 4.0e-23 112.5 190 35.3
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 4.0e-23 112.5 146 35.6
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 1.2e-22 110.9 90 54.4
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 2.0e-22 110.2 190 35.3
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 4.9e-21 105.5 121 41.3
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 7.0e-20 101.7 186 31.7
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 7.0e-20 101.7 187 34.2
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 1.9e-17 93.6 192 27.1
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 1.6e-16 90.5 166 29.5
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 8.0e-16 88.2 166 28.3
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.8e-15 87.0 190 32.6
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 1.5e-14 84.0 118 40.7
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 2.6e-14 83.2 116 40.5
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 1.1e-12 77.8 90 42.2
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 7.0e-12 75.1 188 26.6
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 1.2e-11 74.3 77 50.6
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 5.0e-10 68.9 166 25.3
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 3.1e-07 59.7 66 45.5
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 2.6e-06 56.6 181 21.5


User provided reference genes

Program Settings