Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G016810 Citrullus lanatus HOM05D006001 ORTHO05D006714 9.2e-187 656.8 334 100.0
MELO3C021835.2 Cucumis melo HOM05D006001 ORTHO05D006714 3.6e-151 538.5 337 81.9
MELO3C008828.2 Cucumis melo HOM05D006001 ORTHO05D006714 2.1e-143 512.7 337 81.0
CsaV3_2G036230 Cucumis sativus L. HOM05D006001 ORTHO05D006714 2.3e-129 466.1 336 72.6
Sed0021215 Sechium edule HOM05D006001 ORTHO05D006714 2.0e-64 250.4 230 62.2
Thecc.08G071800 Theobroma cacao HOM05D006001 ORTHO05D006714 1.4e-46 191.0 368 39.9
QL12p023212 Quercus lobata HOM05D006001 ORTHO05D006714 1.6e-45 187.6 352 41.8
GSVIVG01009188001 Vitis vinifera HOM05D006001 ORTHO05D006714 1.9e-43 180.6 347 40.3
QL09p017955 Quercus lobata HOM05D006001 ORTHO05D006714 2.5e-43 180.3 347 40.6
Haze_22467 Corylus avellana HOM05D006001 ORTHO05D006714 4.3e-43 179.5 375 40.8
CiPaw.03G148200 Carya illinoinensis HOM05D006001 ORTHO05D006714 5.6e-43 179.1 367 39.5
Cfa013804 Carpinus fangiana HOM05D006001 ORTHO05D006714 3.1e-41 173.3 377 39.8
Manes.18G058066 Manihot esculenta HOM05D006001 ORTHO05D006714 4.0e-41 172.9 353 40.8
Duzib128G1071 Durio zibethinus HOM05D006001 ORTHO05D006714 1.9e-38 164.1 387 35.7
Duzib106G1137 Durio zibethinus HOM05D006001 ORTHO05D006714 1.2e-37 161.4 380 35.5
CiPaw.07G164600 Carya illinoinensis HOM05D006001 ORTHO05D006714 6.0e-37 159.1 353 36.0
Haze_22468 Corylus avellana HOM05D006001 ORTHO05D006714 1.8e-36 157.5 375 38.1
TAR381G0479 Trochodendron aralioides HOM05D006001 ORTHO05D006714 2.3e-36 157.1 340 38.5
Prupe.1G533200 Prunus persica HOM05D006001 ORTHO05D006714 1.5e-35 154.5 423 33.1
Atru.chr13.1002 Acer truncatum HOM05D006001 ORTHO05D006714 3.3e-35 153.3 373 38.1
TWI56G0486 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 3.3e-35 153.3 371 38.0
COL.COLO4_35255 Corchorus olitorius HOM05D006001 ORTHO05D006714 1.4e-33 147.9 338 34.9
Ciclev10001506m.g Citrus clementina HOM05D006001 ORTHO05D006714 4.0e-33 146.4 387 34.4
Cpa.g.c29936.2 Carica papaya HOM05D006001 ORTHO05D006714 6.9e-33 145.6 379 35.1
Potri.002G111500 Populus trichocarpa HOM05D006001 ORTHO05D006714 3.4e-32 143.3 358 36.3
MD08G1199700 Malus domestica HOM05D006001 ORTHO05D006714 9.9e-32 141.7 365 35.3
CSS0018086 Camellia sinensis var. sinensis HOM05D006001 ORTHO05D006714 4.9e-31 139.4 421 34.4
Dinv42605 Davidia involucrata HOM05D006001 ORTHO05D006714 4.9e-31 139.4 356 37.6
Gohir.A05G320600 Gossypium hirsutum HOM05D006001 ORTHO05D006714 1.1e-30 138.3 360 36.1
Eucgr.H00032 Eucalyptus grandis HOM05D006001 ORTHO05D006714 5.5e-30 136.0 351 36.5
Potri.005G153300 Populus trichocarpa HOM05D006001 ORTHO05D006714 5.5e-30 136.0 354 37.0
Eucgr.L02666 Eucalyptus grandis HOM05D006001 ORTHO05D006714 2.7e-29 133.7 351 36.2
Sc04g0007160 Simmondsia chinensis HOM05D006001 ORTHO05D006714 1.0e-28 131.7 343 37.0
Sabra02G0088000 Salix brachista HOM05D006001 ORTHO05D006714 1.8e-28 131.0 357 34.5
RcHm_v2.0_Chr7g0235791 Rosa chinensis HOM05D006001 ORTHO05D006714 3.9e-28 129.8 423 32.2
BcaC09g50862 Brassica carinata HOM05D006001 ORTHO05D006714 3.3e-27 126.7 349 34.7
Gorai.009G346500 Gossypium raimondii HOM05D006001 ORTHO05D006714 5.6e-27 125.9 361 34.9
Sed0021655 Sechium edule HOM05D006001 ORTHO05D006714 5.6e-27 125.9 103 68.0
arahy.Tifrunner.gnm1.ann1.5459VI Arachis hypogaea HOM05D006001 ORTHO05D006714 7.4e-27 125.6 339 33.9
Nitab4.5_0000354g0120 Nicotiana tabacum HOM05D006001 ORTHO05D006714 1.6e-26 124.4 366 34.4
Oeu063699.1 Olea europaea HOM05D006001 ORTHO05D006714 2.1e-26 124.0 359 35.7
MBI16_g12475_MAGBIO Magnolia biondii HOM05D006001 ORTHO05D006714 2.8e-26 123.6 350 34.6
A01p15870 Brassica napus HOM05D002298 ORTHO05D006714 4.8e-26 122.9 340 32.4
Glyma.02G215100 Glycine max HOM05D006001 ORTHO05D006714 4.8e-26 122.9 356 31.7
Gohir.D05G322800 Gossypium hirsutum HOM05D006001 ORTHO05D006714 1.1e-25 121.7 372 33.1
TWI12G0152 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 1.1e-25 121.7 331 35.6
CANSAT11G1699 Cannabis sativa HOM05D006001 ORTHO05D006714 1.8e-25 120.9 346 34.7
arahy.Tifrunner.gnm1.ann1.X0SJ4P Arachis hypogaea HOM05D006001 ORTHO05D006714 2.4e-25 120.6 354 32.5
PGR042G0630 Punica granatum HOM05D006001 ORTHO05D006714 3.1e-25 120.2 359 35.4
FAN08G3160 Fragaria x ananassa HOM05D006001 ORTHO05D006714 6.9e-25 119.0 426 31.5
BolC1t01909H Brassica oleracea HOM05D002298 ORTHO05D006714 9.0e-25 118.6 344 33.7
THA.LOC104806890 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 1.5e-24 117.9 367 33.0
A03p55330 Brassica napus HOM05D006001 ORTHO05D006714 2.0e-24 117.5 369 32.8
BcaC06g32880 Brassica carinata HOM05D006001 ORTHO05D006714 2.6e-24 117.1 341 33.1
Nn6g34170 Nelumbo nucifera HOM05D006001 ORTHO05D006714 2.6e-24 117.1 348 37.4
AT4G24500 Arabidopsis thaliana HOM05D006001 ORTHO05D006714 3.4e-24 116.7 350 34.3
C01p19810 Brassica napus HOM05D002298 ORTHO05D006714 4.5e-24 116.3 344 33.4
BraA01t01521Z Brassica rapa HOM05D002298 ORTHO05D006714 5.8e-24 115.9 345 33.6
Carub.0007s1657 Capsella rubella HOM05D006001 ORTHO05D006714 5.8e-24 115.9 350 32.6
LjContig00408g0013719 Lotus japonicus HOM05D006001 ORTHO05D006714 5.8e-24 115.9 379 29.6
Aa31LG4G9600 Aethionema arabicum HOM05D006001 ORTHO05D006714 7.6e-24 115.5 360 31.7
Actinidia19626 Actinidia chinensis HOM05D006001 ORTHO05D006714 1.0e-23 115.2 407 33.4
Medtr5g066450 Medicago truncatula HOM05D006001 ORTHO05D006714 1.7e-23 114.4 352 32.4
FAN18G3411 Fragaria x ananassa HOM05D006001 ORTHO05D006714 2.2e-23 114.0 435 29.0
Hund26817 Selenicereus undatus HOM05D006001 ORTHO05D006714 2.9e-23 113.6 359 34.8
Rhsim07G0212300 Rhododendron simsii HOM05D006001 ORTHO05D006714 1.1e-22 111.7 417 33.8
CARHR231890 Cardamine hirsuta HOM05D006001 ORTHO05D006714 1.4e-22 111.3 350 35.4
Sp7g22490 Schrenkiella parvula HOM05D006001 ORTHO05D006714 2.7e-21 107.1 350 34.0
Thhalv10025760m.g Eutrema salsugineum HOM05D006001 ORTHO05D006714 7.9e-21 105.5 349 34.4
HanXRQChr03g0093751 Helianthus annuus HOM05D006001 ORTHO05D006714 1.3e-20 104.8 358 34.1
Oeu034401.1 Olea europaea HOM05D006001 ORTHO05D006714 1.8e-20 104.4 373 31.6
PSO210G5625 Papaver somniferum HOM05D006001 ORTHO05D006714 5.1e-20 102.8 359 35.1
BraA03t14592Z Brassica rapa HOM05D006001 ORTHO05D006714 8.7e-20 102.1 361 31.3
FvH4_5g34870 Fragaria vesca HOM05D006001 ORTHO05D006714 8.7e-20 102.1 428 29.9
Psat2g065160 Pisum sativum HOM05D006001 ORTHO05D006714 8.7e-20 102.1 351 31.1
PGSC0003DMG400009339 Solanum tuberosum HOM05D006001 ORTHO05D006714 1.5e-19 101.3 338 31.4
FAN13G1830 Fragaria x ananassa HOM05D006001 ORTHO05D006714 1.9e-19 100.9 424 30.2
Peaxi162Scf00160g00103 Petunia axillaris HOM05D006001 ORTHO05D006714 1.9e-19 100.9 386 34.2
AL7G28720 Arabidopsis lyrata HOM05D006001 ORTHO05D006714 2.5e-19 100.5 338 33.4
Nn5g29866 Nelumbo nucifera HOM05D006001 ORTHO05D006714 2.5e-19 100.5 280 33.9
BolC7t45854H Brassica oleracea HOM05D006001 ORTHO05D006714 7.4e-19 99.0 354 31.1
Glyma.14G182400 Glycine max HOM05D006001 ORTHO05D006714 7.4e-19 99.0 383 32.9
Solyc04g076410.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 9.6e-19 98.6 342 30.1
Sopen04g030170 Solanum pennellii HOM05D006001 ORTHO05D006714 9.6e-19 98.6 339 30.1
SGA_v2.0_scaffold20G09128 Striga asiatica HOM05D006001 ORTHO05D006714 2.1e-18 97.4 344 32.0
Lsat_1_v5_gn_3_133380 Lactuca sativa HOM05D006001 ORTHO05D006714 2.8e-18 97.1 350 35.7
CAN.G1700.2 Capsicum annuum HOM05D006001 ORTHO05D006714 3.7e-18 96.7 374 32.4
SGA_v2.0_scaffold24G10238 Striga asiatica HOM05D006001 ORTHO05D006714 6.3e-18 95.9 342 30.1
DCAR_023481 Daucus carota HOM05D006001 ORTHO05D006714 1.4e-17 94.7 420 31.0
SalBow7G4402 Salvia bowleyana HOM05D006001 ORTHO05D006714 1.2e-16 91.7 393 31.3
PSO170G4643 Papaver somniferum HOM05D006001 ORTHO05D006714 2.0e-16 90.9 333 32.7
Phvul.008G182500 Phaseolus vulgaris HOM05D006001 ORTHO05D006714 3.4e-16 90.1 430 27.2
PGSC0003DMG400002050 Solanum tuberosum HOM05D006001 ORTHO05D006714 5.9e-16 89.4 377 30.8
Cc00_g15770 Coffea canephora HOM05D006001 ORTHO05D006714 1.1e-14 85.1 352 31.5
Migut.C00706 Erythranthe guttata HOM05D006001 ORTHO05D006714 1.1e-14 85.1 366 29.8
TPR.G34712 Trifolium pratense HOM05D006001 ORTHO05D006714 2.5e-14 84.0 383 29.0
Ca_05452_v3 Cicer arietinum L. HOM05D006001 ORTHO05D006714 4.2e-14 83.2 358 29.3
EL10Ac1g00506 Beta vulgaris HOM05D034668 ORTHO05D006714 1.6e-13 81.3 416 31.2
Sopen12g030020 Solanum pennellii HOM05D006001 ORTHO05D006714 2.1e-13 80.9 378 29.9
CDE06G1720 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 1.0e-12 78.6 150 43.3
Lj4A738G22 Lonicera japonica HOM05D006001 ORTHO05D006714 1.0e-12 78.6 413 30.0
Aqoxy5G01371 Aquilegia oxysepala HOM05D006001 ORTHO05D006714 1.3e-12 78.2 436 28.2
CDE04G0496 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 1.1e-11 75.1 343 31.8
THA.LOC104799788 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 1.1e-11 75.1 313 30.7
VMungo1127G1493 Vigna mungo HOM05D006001 ORTHO05D006714 1.1e-11 75.1 142 40.1
C07p53620 Brassica napus HOM05D006001 ORTHO05D006714 1.5e-11 74.7 219 32.9
ATR0767G016 Amborella trichopoda HOM05D006001 ORTHO05D006714 1.6e-10 71.2 372 27.4
Lj6g0019377 Lotus japonicus HOM05D006001 ORTHO05D006714 2.2e-10 70.9 298 28.2
TAR376G0788 Trochodendron aralioides HOM05D006001 ORTHO05D006714 6.3e-10 69.3 223 31.4
HPP92_021096 Vanilla planifolia HOM05D006001 ORTHO05D006714 6.3e-10 69.3 343 29.7
unitig_578.g16728 Utricularia gibba HOM05D006001 ORTHO05D006714 8.2e-10 68.9 353 27.8
Lalb_Chr17g0344581 Lupinus albus HOM05D006001 ORTHO05D006714 4.1e-09 66.6 338 25.4
SHI11238 Sapria himalayana HOM05D006001 ORTHO05D006714 6.9e-09 65.9 113 39.8
Nitab4.5_0000131g0110 Nicotiana tabacum HOM05D006001 ORTHO05D006714 1.3e-07 61.6 329 25.2
HanXRQChr13g0425671 Helianthus annuus HOM05D006001 ORTHO05D006714 1.7e-07 61.2 93 41.9
HanXRQChr13g0425801 Helianthus annuus HOM05D006001 ORTHO05D006714 2.2e-07 60.8 76 47.4
Solyc12g087990.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 2.2e-07 60.8 232 34.1
vmacro17886 Vaccinium macrocarpon HOM05D006001 ORTHO05D006714 2.2e-07 60.8 61 55.7
SEGI_15482 Sequoiadendron giganteum HOM05D006001 ORTHO05D006714 2.9e-07 60.5 225 32.9
HanXRQChr13g0425001 Helianthus annuus HOM05D006001 ORTHO05D006714 3.8e-07 60.1 77 49.4
Peaxi162Scf00454g00211 Petunia axillaris HOM05D006001 ORTHO05D006714 5.0e-07 59.7 332 27.7
Nitab4.5_0019796g0010 Nicotiana tabacum HOM05D006001 ORTHO05D006714 9.4e-06 55.5 257 29.2


User provided reference genes

Program Settings