Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 1.9e-119 432.6 230 100.0
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 2.2e-102 375.9 233 88.8
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 1.2e-100 370.2 234 88.5
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 1.1e-98 363.6 237 85.7
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 3.8e-75 285.4 232 71.6
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 9.1e-69 264.2 231 68.0
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 4.2e-66 255.4 222 67.1
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 9.5e-66 254.2 222 67.6
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 9.5e-66 254.2 224 63.8
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 3.6e-65 252.3 222 66.7
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 1.0e-64 250.8 231 64.5
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 3.0e-64 249.2 215 67.0
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 1.2e-63 247.3 230 63.0
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.3e-62 243.8 228 64.0
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 2.2e-62 243.0 219 68.0
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 2.8e-62 242.7 235 62.6
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 1.1e-61 240.7 224 63.8
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 1.8e-61 240.0 229 62.0
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 2.4e-61 239.6 224 63.8
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 3.1e-61 239.2 227 61.7
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 7.0e-61 238.0 227 63.4
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 1.2e-60 237.3 225 63.6
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 2.0e-60 236.5 224 64.7
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 2.0e-60 236.5 231 61.0
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 3.5e-60 235.7 233 61.8
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 1.3e-59 233.8 219 63.0
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 2.3e-59 233.0 228 61.8
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 2.3e-59 233.0 233 61.4
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 2.3e-59 233.0 216 63.9
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 3.9e-59 232.3 231 61.5
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 1.5e-58 230.3 277 55.2
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 4.3e-58 228.8 226 61.9
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 9.5e-58 227.6 215 61.4
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 1.6e-57 226.9 227 62.1
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 1.4e-56 223.8 226 61.1
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 1.4e-56 223.8 229 60.3
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 1.8e-56 223.4 234 60.3
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 1.8e-56 223.4 227 59.0
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 6.8e-56 221.5 214 64.5
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 8.9e-56 221.1 225 60.0
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 2.0e-55 219.9 202 64.4
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 2.0e-55 219.9 207 60.9
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 2.0e-55 219.9 225 59.6
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 2.6e-55 219.5 221 59.3
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 4.4e-55 218.8 214 63.6
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 3.7e-54 215.7 262 54.6
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 1.9e-53 213.4 224 57.1
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 5.4e-53 211.8 223 57.0
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 2.0e-52 209.9 229 57.6
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 6.0e-52 208.4 222 59.0
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 6.0e-52 208.4 216 58.3
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 6.0e-52 208.4 219 57.1
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 7.8e-52 208.0 227 58.6
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 1.3e-51 207.2 209 59.8
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 2.3e-51 206.5 233 57.5
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 3.0e-51 206.1 210 59.5
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 3.9e-51 205.7 222 55.9
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 8.6e-51 204.5 226 53.5
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 1.9e-50 203.4 248 52.4
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 2.5e-50 203.0 219 60.7
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 2.5e-50 203.0 214 58.4
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 1.2e-49 200.7 214 57.0
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 2.8e-49 199.5 223 56.5
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 2.8e-49 199.5 235 52.8
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 2.8e-49 199.5 227 56.4
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 4.7e-49 198.7 222 56.8
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 4.7e-49 198.7 224 55.8
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 6.2e-49 198.4 223 54.3
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 1.1e-48 197.6 212 56.1
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 1.4e-48 197.2 233 54.5
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 1.4e-48 197.2 223 57.8
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 1.8e-48 196.8 230 53.5
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 2.3e-48 196.4 220 54.5
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 3.1e-48 196.1 227 55.1
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 4.0e-48 195.7 222 55.9
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 5.2e-48 195.3 226 54.0
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 6.8e-48 194.9 224 56.7
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 1.5e-47 193.7 245 51.8
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 3.4e-47 192.6 225 56.4
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 7.5e-47 191.4 212 56.1
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 9.8e-47 191.0 222 55.4
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 4.9e-46 188.7 222 53.6
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 1.1e-45 187.6 222 54.5
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 1.1e-45 187.6 222 54.5
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 1.1e-45 187.6 222 54.5
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 1.1e-45 187.6 218 55.5
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 1.4e-45 187.2 269 48.3
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 1.9e-45 186.8 221 53.8
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 1.6e-44 183.7 240 50.4
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 2.7e-44 183.0 230 51.3
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 6.0e-44 181.8 221 52.9
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 5.1e-43 178.7 233 52.4
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 5.1e-43 178.7 221 54.8
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 1.9e-42 176.8 213 55.9
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 5.6e-42 175.3 322 41.6
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 7.3e-42 174.9 226 50.9
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 1.2e-41 174.1 218 52.3
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 1.2e-41 174.1 215 53.0
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 2.1e-41 173.3 216 52.3
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 2.8e-41 172.9 227 50.2
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 4.7e-41 172.2 186 59.1
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 4.7e-41 172.2 186 59.1
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 4.7e-41 172.2 223 50.7
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 1.4e-40 170.6 265 44.9
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 1.4e-40 170.6 265 44.9
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 1.8e-40 170.2 222 50.5
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 3.1e-40 169.5 172 62.2
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 3.1e-40 169.5 220 48.6
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 6.8e-40 168.3 224 49.6
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 6.8e-40 168.3 224 49.6
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 6.8e-40 168.3 224 49.6
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 1.2e-39 167.5 227 51.5
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 3.4e-39 166.0 226 49.6
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 3.4e-39 166.0 226 49.6
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 4.9e-38 162.2 178 56.7
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 4.9e-38 162.2 222 48.2
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 1.3e-35 154.1 225 47.6
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 1.1e-34 151.0 223 47.1
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 2.4e-32 143.3 222 45.9
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 2.4e-32 143.3 217 45.6
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 2.4e-32 143.3 217 45.6
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 2.2e-30 136.7 220 45.0
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 3.2e-29 132.9 168 53.0
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 5.4e-29 132.1 315 38.7
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 6.0e-28 128.6 99 71.7
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 1.3e-27 127.5 161 53.4
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 5.1e-27 125.6 213 45.5
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 6.6e-27 125.2 234 41.5
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 2.5e-26 123.2 166 49.4
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 1.1e-24 117.9 158 51.9
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 8.4e-22 108.2 254 34.6
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 3.9e-19 99.4 124 51.6
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 5.1e-19 99.0 217 36.9
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 3.6e-17 92.8 161 41.6
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 4.8e-17 92.4 94 57.4
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 8.4e-14 81.6 148 47.3
arahy.Tifrunner.gnm1.ann1.DUW5WJ Arachis hypogaea HOM05D004799 ORTHO05D005500 5.4e-13 79.0 79 63.3
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 6.0e-12 75.5 127 48.0
Lj5A253T37 Lonicera japonica HOM05D012292 ORTHO05D012234 2.5e-10 70.1 251 34.3
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 9.6e-10 68.2 39 84.6
Lj5A252G43 Lonicera japonica HOM05D012292 ORTHO05D012234 1.1e-08 64.7 92 43.5
Pp3c4_27250 Physcomitrium patens HOM05D004799 ORTHO05D005500 1.4e-08 64.3 149 36.9
A09p63310 Brassica napus HOM05D004799 ORTHO05D005500 2.4e-08 63.5 53 64.2
BraA09t41682Z Brassica rapa HOM05D004799 ORTHO05D005500 2.4e-08 63.5 53 64.2
SEGI_00858 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 2.4e-08 63.5 127 39.4
GSVIVG01013911001 Vitis vinifera HOM05D004799 ORTHO05D005500 3.1e-08 63.2 77 51.9
Lj5A250G20 Lonicera japonica HOM05D012292 ORTHO05D012234 5.8e-07 58.9 57 50.9
CSS0012117 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 8.4e-06 55.1 45 62.2


User provided reference genes

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