Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G013360 Citrullus lanatus HOM05D004403 ORTHO05D006164 8.8e-176 620.2 308 100.0
MELO3C008722.2 Cucumis melo HOM05D004403 ORTHO05D006164 7.8e-140 500.7 253 97.2
CsaV3_2G009710 Cucumis sativus L. HOM05D004403 ORTHO05D006164 3.3e-138 495.4 253 95.7
Sed0016961 Sechium edule HOM05D004403 ORTHO05D006164 5.8e-135 484.6 253 94.1
CiPaw.04G063300 Carya illinoinensis HOM05D004403 ORTHO05D006164 1.6e-116 423.3 254 80.7
Thecc.03G162000 Theobroma cacao HOM05D004403 ORTHO05D006164 1.6e-116 423.3 254 78.3
MD01G1186100 Malus domestica HOM05D004403 ORTHO05D006164 1.3e-115 420.2 256 78.9
Prupe.2G282700 Prunus persica HOM05D004403 ORTHO05D006164 1.5e-114 416.8 256 78.1
FAN03G0558 Fragaria x ananassa HOM05D004403 ORTHO05D006164 1.9e-114 416.4 256 79.7
FAN03G1790 Fragaria x ananassa HOM05D004403 ORTHO05D006164 1.9e-114 416.4 256 79.7
Gorai.006G065300 Gossypium raimondii HOM05D004403 ORTHO05D006164 2.5e-114 416.0 254 77.6
Gohir.D09G045100 Gossypium hirsutum HOM05D004403 ORTHO05D006164 3.3e-114 415.6 254 77.2
Haze_13825 Corylus avellana HOM05D004403 ORTHO05D006164 1.2e-113 413.7 256 79.7
FvH4_7g28210 Fragaria vesca HOM05D004403 ORTHO05D006164 1.2e-113 413.7 256 78.9
FAN06G1852 Fragaria x ananassa HOM05D004403 ORTHO05D006164 1.2e-113 413.7 256 78.9
Cfa008231 Carpinus fangiana HOM05D004403 ORTHO05D006164 1.6e-113 413.3 256 79.7
COL.COLO4_14184 Corchorus olitorius HOM05D004403 ORTHO05D006164 1.6e-113 413.3 254 76.4
Gohir.A09G043600 Gossypium hirsutum HOM05D004403 ORTHO05D006164 3.6e-113 412.1 254 76.8
FAN06G4744 Fragaria x ananassa HOM05D004403 ORTHO05D006164 8.1e-113 411.0 256 78.1
FAN01G1597 Fragaria x ananassa HOM05D004403 ORTHO05D006164 1.1e-112 410.6 256 78.1
TWI39G0431 Tripterygium wilfordii HOM05D004403 ORTHO05D006164 3.1e-112 409.1 254 76.4
FAN10G1553 Fragaria x ananassa HOM05D004403 ORTHO05D006164 4.0e-112 408.7 255 78.4
RcHm_v2.0_Chr1g0375181 Rosa chinensis HOM05D004403 ORTHO05D006164 4.0e-112 408.7 257 77.4
GSVIVG01018506001 Vitis vinifera HOM05D004403 ORTHO05D006164 4.0e-112 408.7 254 75.6
Eucgr.K00143 Eucalyptus grandis HOM05D004403 ORTHO05D006164 5.8e-111 404.8 255 77.3
TAR375G1017 Trochodendron aralioides HOM05D004403 ORTHO05D006164 2.9e-110 402.5 254 74.8
Ciclev10004147m.g Citrus clementina HOM05D004403 ORTHO05D006164 4.9e-110 401.7 254 75.2
PGR142G2186 Punica granatum HOM05D004403 ORTHO05D006164 1.4e-109 400.2 255 75.3
CSS0005074 Camellia sinensis var. sinensis HOM05D004403 ORTHO05D006164 9.3e-109 397.5 255 75.3
Potri.012G022700 Populus trichocarpa HOM05D004403 ORTHO05D006164 3.5e-108 395.6 256 74.6
Actinidia25041 Actinidia chinensis HOM05D004403 ORTHO05D006164 4.6e-108 395.2 257 74.3
MBI04_g32240_MAGBIO Magnolia biondii HOM05D004403 ORTHO05D006164 6.0e-108 394.8 254 74.4
Sabra12G0011100 Salix brachista HOM05D004403 ORTHO05D006164 7.8e-108 394.4 256 73.8
Rhsim03G0172000 Rhododendron simsii HOM05D004403 ORTHO05D006164 1.0e-107 394.0 254 73.6
Nn1g01207 Nelumbo nucifera HOM05D004403 ORTHO05D006164 1.5e-106 390.2 254 74.0
Lalb_Chr03g0033081 Lupinus albus HOM05D004403 ORTHO05D006164 5.6e-106 388.3 255 72.5
arahy.Tifrunner.gnm1.ann1.ZK7SIQ Arachis hypogaea HOM05D004403 ORTHO05D006164 8.1e-105 384.4 273 67.8
arahy.Tifrunner.gnm1.ann1.R8RU34 Arachis hypogaea HOM05D004403 ORTHO05D006164 1.8e-104 383.3 273 67.4
CARHR264420 Cardamine hirsuta HOM05D004403 ORTHO05D006164 3.1e-104 382.5 258 72.1
AL8G25910 Arabidopsis lyrata HOM05D004403 ORTHO05D006164 4.0e-104 382.1 258 72.1
Hma1.2p1_0099F.1_g048870 Hydrangea macrophylla HOM05D004403 ORTHO05D006164 4.0e-104 382.1 255 71.8
THA.LOC104825074 Tarenaya hassleriana HOM05D004403 ORTHO05D006164 4.0e-104 382.1 256 73.0
AT5G51660 Arabidopsis thaliana HOM05D004403 ORTHO05D006164 6.9e-104 381.3 258 71.7
Aa31LG3G8090 Aethionema arabicum HOM05D004403 ORTHO05D006164 4.5e-103 378.6 266 69.2
Thhalv10012441m.g Eutrema salsugineum HOM05D004403 ORTHO05D006164 4.5e-103 378.6 260 71.9
AUR62035037 Chenopodium quinoa HOM05D004403 ORTHO05D006164 7.6e-103 377.9 259 73.0
BcaB05g23994 Brassica carinata HOM05D004403 ORTHO05D006164 1.3e-102 377.1 259 72.6
Glyma.16G203900 Glycine max HOM05D004403 ORTHO05D006164 2.9e-102 375.9 255 69.8
BcaC03g14584 Brassica carinata HOM05D004403 ORTHO05D006164 6.4e-102 374.8 262 71.8
BolC2t08162H Brassica oleracea HOM05D004403 ORTHO05D006164 6.4e-102 374.8 262 71.8
Psat1g115120 Pisum sativum HOM05D004403 ORTHO05D006164 6.4e-102 374.8 270 66.7
EL10Ac3g05779 Beta vulgaris HOM05D004403 ORTHO05D006164 8.4e-102 374.4 257 70.0
Lj8C36G18 Lonicera japonica HOM05D004403 ORTHO05D006164 1.4e-101 373.6 251 72.9
Hund11791 Selenicereus undatus HOM05D004403 ORTHO05D006164 1.4e-101 373.6 255 70.2
A02p12180 Brassica napus HOM05D004403 ORTHO05D006164 2.4e-101 372.9 262 71.4
BraA02t06282Z Brassica rapa HOM05D004403 ORTHO05D006164 2.4e-101 372.9 262 71.4
Glyma.09G153100 Glycine max HOM05D004403 ORTHO05D006164 3.2e-101 372.5 256 70.3
Lj2g0001335 Lotus japonicus HOM05D004403 ORTHO05D006164 4.2e-101 372.1 260 70.4
CDE12G0311 Ceratophyllum demersum HOM05D004403 ORTHO05D006164 9.3e-101 370.9 255 72.2
Sp6g13860 Schrenkiella parvula HOM05D004403 ORTHO05D006164 1.2e-100 370.5 254 72.4
C02p20300 Brassica napus HOM05D004403 ORTHO05D006164 1.6e-100 370.2 262 71.0
Carub.0008s1166 Capsella rubella HOM05D004403 ORTHO05D006164 4.6e-100 368.6 260 69.2
vmacro06764 Vaccinium macrocarpon HOM05D004403 ORTHO05D006164 6.0e-100 368.2 271 68.3
Ah.07g208350 Amaranthus hybridus HOM05D004403 ORTHO05D006164 1.0e-99 367.5 257 71.6
Ca_26390_v3 Cicer arietinum L. HOM05D004403 ORTHO05D006164 1.0e-99 367.5 258 67.4
QL12p039581 Quercus lobata HOM05D004403 ORTHO05D006164 6.7e-99 364.8 316 60.4
Cpa.g.sc3.267 Carica papaya HOM05D004403 ORTHO05D006164 2.5e-98 362.8 254 70.5
Medtr6g461810 Medicago truncatula HOM05D004403 ORTHO05D006164 4.3e-98 362.1 255 68.2
Sc17g0003760 Simmondsia chinensis HOM05D004403 ORTHO05D006164 7.4e-98 361.3 257 68.5
Aqoxy7G00599 Aquilegia oxysepala HOM05D004403 ORTHO05D006164 6.2e-97 358.2 266 66.5
ATR0810G058 Amborella trichopoda HOM05D004403 ORTHO05D006164 7.6e-95 351.3 260 66.5
VMungo0464G1100 Vigna mungo HOM05D004403 ORTHO05D006164 8.4e-94 347.8 316 57.3
Migut.F01168 Erythranthe guttata HOM05D004403 ORTHO05D006164 2.7e-92 342.8 257 65.0
PSO782G0596 Papaver somniferum HOM05D004403 ORTHO05D006164 2.7e-92 342.8 261 67.4
Nitab4.5_0009404g0010 Nicotiana tabacum HOM05D004403 ORTHO05D006164 4.6e-92 342.0 253 64.0
Lsat_1_v5_gn_8_8061 Lactuca sativa HOM05D004403 ORTHO05D006164 6.0e-92 341.7 261 65.1
HPP92_003516 Vanilla planifolia HOM05D004403 ORTHO05D006164 6.0e-92 341.7 253 64.0
HanXRQChr08g0214911 Helianthus annuus HOM05D004403 ORTHO05D006164 7.9e-92 341.3 258 65.9
Cc02_g03860 Coffea canephora HOM05D004403 ORTHO05D006164 1.3e-91 340.5 304 58.2
SGA_v2.0_scaffold303G47887 Striga asiatica HOM05D004403 ORTHO05D006164 8.7e-91 337.8 257 63.0
Nitab4.5_0000072g0400 Nicotiana tabacum HOM05D004403 ORTHO05D006164 1.1e-90 337.4 264 61.4
PSO478G4614 Papaver somniferum HOM05D004403 ORTHO05D006164 1.1e-90 337.4 261 66.7
CAN.G916.4 Capsicum annuum HOM05D004403 ORTHO05D006164 4.3e-90 335.5 253 62.8
SalBow2G1183 Salvia bowleyana HOM05D004403 ORTHO05D006164 9.6e-90 334.3 265 61.1
Sopen03g003090 Solanum pennellii HOM05D004403 ORTHO05D006164 2.4e-88 329.7 253 62.5
Solyc03g007100.3 Solanum lycopersicum HOM05D004403 ORTHO05D006164 6.9e-88 328.2 253 62.1
DCAR_005517 Daucus carota HOM05D004403 ORTHO05D006164 9.0e-88 327.8 255 65.5
DCAR_016012 Daucus carota HOM05D004403 ORTHO05D006164 1.2e-87 327.4 255 65.5
ECA233G5768 Erigeron canadensis HOM05D004403 ORTHO05D006164 2.6e-87 326.2 258 63.2
Oeu021730.2 Olea europaea HOM05D004403 ORTHO05D006164 4.9e-86 322.0 265 60.0
AUR62016090 Chenopodium quinoa HOM05D004403 ORTHO05D006164 9.3e-85 317.8 259 64.5
Duzib205G1350 Durio zibethinus HOM05D004403 ORTHO05D006164 1.8e-83 313.5 254 61.0
Dinv02141 Davidia involucrata HOM05D004403 ORTHO05D006164 2.4e-80 303.1 191 73.8
Zm00001eb086790 Zea mays HOM05D004403 ORTHO05D006164 2.4e-80 303.1 264 59.5
SHI13862 Sapria himalayana HOM05D004403 ORTHO05D006164 3.2e-77 292.7 208 65.4
AagrBONN_evm.TU.Sc2ySwM_228.3689 Anthoceros agrestis HOM05D004403 ORTHO05D006164 9.7e-74 281.2 295 50.2
Peaxi162Scf00192g01018 Petunia axillaris HOM05D004403 ORTHO05D006164 9.7e-74 281.2 254 55.1
Mapoly0021s0083 Marchantia polymorpha HOM05D004403 ORTHO05D006164 5.9e-71 271.9 273 52.4
unitig_0.g469 Utricularia gibba HOM05D004403 ORTHO05D006164 1.4e-69 267.3 257 53.3
TPR.G10680 Trifolium pratense HOM05D004403 ORTHO05D006164 1.9e-69 266.9 257 53.3
Pp3c11_8810 Physcomitrium patens HOM05D004403 ORTHO05D006164 1.8e-67 260.4 270 49.6
SMO356G0002 Selaginella moellendorffii HOM05D004403 ORTHO05D006164 1.2e-63 247.7 266 49.6
CBR_g28568 Chara braunii HOM05D004403 ORTHO05D006164 1.7e-62 243.8 298 43.3
Dinv00168 Davidia involucrata HOM05D004403 ORTHO05D006164 3.3e-58 229.6 157 68.8
Dinv02142 Davidia involucrata HOM05D004403 ORTHO05D006164 7.4e-58 228.4 157 68.8
Dinv02140 Davidia involucrata HOM05D004403 ORTHO05D006164 9.7e-58 228.0 156 69.2
Hma1.2p1_0099F.1_g048890 Hydrangea macrophylla HOM05D004403 ORTHO05D006164 2.2e-57 226.9 171 66.1
Os04g0252200 Oryza sativa ssp. japonica HOM05D004403 ORTHO05D006164 7.5e-42 175.3 123 66.7
MD07G1258300 Malus domestica HOM05D004403 ORTHO05D006164 4.5e-39 166.0 96 79.2
Manes.06G138300 Manihot esculenta HOM05D004403 ORTHO05D006164 2.1e-36 157.1 101 75.2
Duzib068G0276 Durio zibethinus HOM05D004403 ORTHO05D006164 2.8e-36 156.8 99 73.7
Phvul.004G126600 Phaseolus vulgaris HOM05D004403 ORTHO05D006164 3.0e-35 153.3 89 78.7
RhsimUnG0154200 Rhododendron simsii HOM05D000504 ORTHO05D000403 3.4e-26 123.2 109 57.8
Dinv28531 Davidia involucrata HOM05D004403 ORTHO05D006164 8.3e-25 118.6 88 68.2
Cre13.g573450 Chlamydomonas reinhardtii HOM05D004403 ORTHO05D006164 4.6e-23 112.8 325 30.5
PRCOL_00006166 Prasinoderma coloniale HOM05D004403 ORTHO05D006164 2.3e-22 110.5 264 30.7
Glyma.17G179000 Glycine max HOM05D004403 ORTHO05D006164 3.1e-19 100.1 77 63.6
MCO07G456 Micromonas commoda HOM05D004403 ORTHO05D006164 4.9e-17 92.8 266 28.6
TPR.G35938 Trifolium pratense HOM05D004403 ORTHO05D006164 1.2e-12 78.2 55 67.3
CDE04G0245 Ceratophyllum demersum HOM05D002993 ORTHO05D003432 3.4e-10 70.1 55 67.3
SEGI_20486 Sequoiadendron giganteum HOM05D004403 ORTHO05D006164 3.7e-09 66.6 47 61.7


User provided reference genes

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