Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G012180 Citrullus lanatus HOM05D006113 ORTHO05D007828 6.6e-221 770.4 389 100.0
CsaV3_3G049370 Cucumis sativus L. HOM05D006113 ORTHO05D007828 1.5e-193 679.5 393 88.3
MELO3C003389.2 Cucumis melo HOM05D006113 ORTHO05D007828 5.1e-189 664.5 400 85.5
Sed0027774 Sechium edule HOM05D006113 ORTHO05D007828 3.0e-181 638.6 390 84.4
CANSAT21G0754 Cannabis sativa HOM05D006113 ORTHO05D007828 4.2e-151 538.5 386 70.7
Cfa012411 Carpinus fangiana HOM05D006113 ORTHO05D007828 2.0e-145 519.6 383 70.5
Prupe.1G552500 Prunus persica HOM05D006113 ORTHO05D007828 3.5e-145 518.8 389 69.2
CiPaw.11G091200 Carya illinoinensis HOM05D006113 ORTHO05D007828 4.5e-145 518.5 383 69.2
MD09G1232600 Malus domestica HOM05D006113 ORTHO05D007828 2.2e-139 499.6 383 66.3
Haze_08267 Corylus avellana HOM05D006113 ORTHO05D007828 5.4e-138 495.0 439 62.0
RcHm_v2.0_Chr6g0269051 Rosa chinensis HOM05D006113 ORTHO05D007828 4.6e-137 491.9 389 65.0
FvH4_6g31710 Fragaria vesca HOM05D006113 ORTHO05D007828 6.6e-136 488.0 383 65.5
CSS0010269 Camellia sinensis var. sinensis HOM05D006113 ORTHO05D007828 3.3e-135 485.7 390 64.9
Manes.05G117026 Manihot esculenta HOM05D006113 ORTHO05D007828 5.6e-135 485.0 385 64.4
Eucgr.E00301 Eucalyptus grandis HOM05D006113 ORTHO05D007828 9.5e-135 484.2 388 64.2
Dinv28932 Davidia involucrata HOM05D006113 ORTHO05D007828 2.1e-134 483.0 396 62.6
Ah.12g054610 Amaranthus hybridus HOM05D006113 ORTHO05D007828 4.7e-134 481.9 384 63.5
Rhsim07G0124800 Rhododendron simsii HOM05D006113 ORTHO05D007828 6.2e-134 481.5 397 63.2
Ciclev10031360m.g Citrus clementina HOM05D006113 ORTHO05D007828 1.1e-133 480.7 391 64.5
CSS0019238 Camellia sinensis var. sinensis HOM05D006113 ORTHO05D007828 1.4e-133 480.3 393 61.6
CSS0023186 Camellia sinensis var. sinensis HOM05D006113 ORTHO05D007828 1.4e-133 480.3 393 61.6
FAN02G2000 Fragaria x ananassa HOM05D006113 ORTHO05D007828 4.0e-133 478.8 383 64.5
Potri.003G089700 Populus trichocarpa HOM05D006113 ORTHO05D007828 4.0e-133 478.8 387 64.3
FAN09G0007 Fragaria x ananassa HOM05D006113 ORTHO05D007828 5.2e-133 478.4 389 65.0
GSVIVG01013180001 Vitis vinifera HOM05D006113 ORTHO05D007828 6.8e-133 478.0 385 63.6
QL12p006235 Quercus lobata HOM05D006113 ORTHO05D007828 8.9e-133 477.6 498 54.8
vmacro14161 Vaccinium macrocarpon HOM05D006113 ORTHO05D007828 8.9e-133 477.6 375 64.0
Thecc.03G231000 Theobroma cacao HOM05D006113 ORTHO05D007828 2.0e-132 476.5 380 62.6
FAN05G0306 Fragaria x ananassa HOM05D006113 ORTHO05D007828 3.4e-132 475.7 383 64.0
COL.COLO4_17073 Corchorus olitorius HOM05D006113 ORTHO05D007828 4.4e-132 475.3 386 63.2
TWI81G0082 Tripterygium wilfordii HOM05D006113 ORTHO05D007828 2.9e-131 472.6 388 61.6
Atru.chr6.1754 Acer truncatum HOM05D006113 ORTHO05D007828 6.4e-131 471.5 334 69.2
EL10Ac1g02288 Beta vulgaris HOM05D006113 ORTHO05D007828 6.4e-131 471.5 392 61.5
Potri.001G144500 Populus trichocarpa HOM05D006113 ORTHO05D007828 4.1e-130 468.8 382 64.4
Gohir.A08G158300 Gossypium hirsutum HOM05D006113 ORTHO05D007828 5.4e-130 468.4 385 61.8
Lj2g0019507 Lotus japonicus HOM05D006113 ORTHO05D007828 5.4e-130 468.4 383 64.2
Hund14417 Selenicereus undatus HOM05D006113 ORTHO05D007828 5.4e-130 468.4 370 64.3
ECA246G3200 Erigeron canadensis HOM05D006113 ORTHO05D007828 7.1e-130 468.0 393 61.8
Cc08_g02430 Coffea canephora HOM05D006113 ORTHO05D007828 9.2e-130 467.6 370 65.1
Sabra01G0112900 Salix brachista HOM05D006113 ORTHO05D007828 1.2e-129 467.2 351 68.1
TWI60G1370 Tripterygium wilfordii HOM05D006113 ORTHO05D007828 1.2e-129 467.2 390 60.8
Duzib205G1867 Durio zibethinus HOM05D006113 ORTHO05D007828 2.7e-129 466.1 386 61.4
PGR042G1735 Punica granatum HOM05D006113 ORTHO05D007828 3.5e-129 465.7 393 63.1
Gorai.004G186900 Gossypium raimondii HOM05D006113 ORTHO05D007828 6.0e-129 464.9 386 61.9
Gohir.D08G178600 Gossypium hirsutum HOM05D006113 ORTHO05D007828 1.0e-128 464.2 386 61.7
DCAR_008285 Daucus carota HOM05D006113 ORTHO05D007828 2.3e-128 463.0 386 63.7
PGSC0003DMG400020501 Solanum tuberosum HOM05D006113 ORTHO05D007828 3.0e-128 462.6 388 61.6
HanXRQChr06g0167341 Helianthus annuus HOM05D006113 ORTHO05D007828 1.9e-127 459.9 384 61.5
Sc22g0001480 Simmondsia chinensis HOM05D006113 ORTHO05D007828 2.5e-127 459.5 381 62.5
Sopen08g002980 Solanum pennellii HOM05D006113 ORTHO05D007828 4.3e-127 458.8 386 61.1
arahy.Tifrunner.gnm1.ann1.C9Y7N1 Arachis hypogaea HOM05D006113 ORTHO05D007828 5.6e-127 458.4 373 63.0
arahy.Tifrunner.gnm1.ann1.LSM77P Arachis hypogaea HOM05D006113 ORTHO05D007828 5.6e-127 458.4 373 63.0
Lalb_Chr05g0214021 Lupinus albus HOM05D006113 ORTHO05D007828 1.2e-126 457.2 369 63.7
HanXRQChr17g0535731 Helianthus annuus HOM05D006113 ORTHO05D007828 1.6e-126 456.8 389 60.7
Lsat_1_v5_gn_3_16601 Lactuca sativa HOM05D006113 ORTHO05D007828 1.1e-125 454.1 392 60.7
Oeu062745.2 Olea europaea HOM05D006113 ORTHO05D007828 1.1e-125 454.1 378 64.3
CAN.G845.35 Capsicum annuum HOM05D006113 ORTHO05D007828 1.5e-124 450.3 387 61.0
Nitab4.5_0000535g0010 Nicotiana tabacum HOM05D006113 ORTHO05D007828 9.9e-124 447.6 359 62.1
Aa31LG2G13450 Aethionema arabicum HOM05D006113 ORTHO05D007828 1.3e-123 447.2 389 61.2
THA.LOC104807962 Tarenaya hassleriana HOM05D006113 ORTHO05D007828 2.9e-123 446.0 385 60.3
Peaxi162Scf00102g00639 Petunia axillaris HOM05D006113 ORTHO05D007828 3.7e-123 445.7 382 60.5
BcaB03g13726 Brassica carinata HOM05D006113 ORTHO05D007828 4.9e-123 445.3 389 60.7
A05p24790 Brassica napus HOM05D006113 ORTHO05D007828 8.3e-123 444.5 386 60.9
BraA05t21362Z Brassica rapa HOM05D006113 ORTHO05D007828 8.3e-123 444.5 386 60.9
THA.LOC104814434 Tarenaya hassleriana HOM05D006113 ORTHO05D007828 1.1e-122 444.1 387 61.0
AUR62007248 Chenopodium quinoa HOM05D006113 ORTHO05D007828 1.9e-122 443.4 317 65.3
AL1G46750 Arabidopsis lyrata HOM05D006113 ORTHO05D007828 2.4e-122 443.0 387 60.7
AT1G32500 Arabidopsis thaliana HOM05D006113 ORTHO05D007828 4.1e-122 442.2 388 60.6
BolC5t32582H Brassica oleracea HOM05D006113 ORTHO05D007828 7.1e-122 441.4 392 60.5
Nn3g17324 Nelumbo nucifera HOM05D006113 ORTHO05D007828 7.1e-122 441.4 382 58.9
Thhalv10007401m.g Eutrema salsugineum HOM05D006113 ORTHO05D007828 2.7e-121 439.5 389 60.4
BcaC05g27850 Brassica carinata HOM05D006113 ORTHO05D007828 4.6e-121 438.7 392 59.7
C05p38480 Brassica napus HOM05D006113 ORTHO05D007828 4.6e-121 438.7 392 59.7
Carub.0001s3091 Capsella rubella HOM05D006113 ORTHO05D007828 4.6e-121 438.7 385 60.5
CARHR031950 Cardamine hirsuta HOM05D006113 ORTHO05D007828 2.3e-120 436.4 394 59.9
SGA_v2.0_scaffold385G50460 Striga asiatica HOM05D006113 ORTHO05D007828 6.6e-120 434.9 342 63.5
Sp1g28400 Schrenkiella parvula HOM05D006113 ORTHO05D007828 1.5e-119 433.7 397 58.7
MSTRG.12007 Avicennia marina HOM05D006113 ORTHO05D007828 7.3e-119 431.4 389 58.1
Migut.E01131 Erythranthe guttata HOM05D006113 ORTHO05D007828 1.8e-117 426.8 391 57.5
Aqoxy3G00478 Aquilegia oxysepala HOM05D006113 ORTHO05D007828 1.2e-116 424.1 374 60.4
PSO017G4443 Papaver somniferum HOM05D006113 ORTHO05D007828 1.2e-116 424.1 388 57.7
MBI18_g17018_MAGBIO Magnolia biondii HOM05D006113 ORTHO05D007828 3.4e-116 422.5 346 62.7
SalBow1G7584 Salvia bowleyana HOM05D006113 ORTHO05D007828 5.8e-116 421.8 358 59.5
PSO478G3605 Papaver somniferum HOM05D006113 ORTHO05D007828 3.8e-115 419.1 388 57.2
Psat2g173560 Pisum sativum HOM05D006113 ORTHO05D007828 3.2e-114 416.0 383 57.4
Lj8A291G57 Lonicera japonica HOM05D006113 ORTHO05D007828 7.1e-114 414.8 364 61.0
Medtr5g014290 Medicago truncatula HOM05D006113 ORTHO05D007828 1.2e-113 414.1 370 58.4
unitig_52.g17240 Utricularia gibba HOM05D006113 ORTHO05D007828 6.6e-112 408.3 384 55.7
Nitab4.5_0000804g0060 Nicotiana tabacum HOM05D006113 ORTHO05D007828 1.1e-111 407.5 369 57.2
Phvul.002G006200 Phaseolus vulgaris HOM05D006113 ORTHO05D007828 3.5e-105 386.0 343 58.0
Glyma.11G042400 Glycine max HOM05D006113 ORTHO05D007828 1.1e-103 380.9 352 58.2
VMungo1215G1026 Vigna mungo HOM05D006113 ORTHO05D007828 1.4e-101 374.0 344 58.1
PSO478G2563 Papaver somniferum HOM05D006113 ORTHO05D007828 2.7e-97 359.8 377 51.2
TAR371G0010 Trochodendron aralioides HOM05D006113 ORTHO05D007828 3.5e-97 359.4 308 60.1
Ca_24644_v3 Cicer arietinum L. HOM05D006113 ORTHO05D007828 1.8e-96 357.1 245 71.8
HPP92_003349 Vanilla planifolia HOM05D006113 ORTHO05D007828 2.1e-94 350.1 372 51.1
Solyc08g007010.4 Solanum lycopersicum HOM05D006113 ORTHO05D007828 5.3e-93 345.5 245 66.1
AUR62018751 Chenopodium quinoa HOM05D006113 ORTHO05D007828 6.2e-86 322.0 309 56.0
SEGI_13135 Sequoiadendron giganteum HOM05D006113 ORTHO05D007828 1.2e-84 317.8 376 48.1
Cpa.g.sc90.55 Carica papaya HOM05D006113 ORTHO05D007828 3.4e-84 316.2 302 57.3
PSO782G1575 Papaver somniferum HOM05D006113 ORTHO05D007828 7.1e-82 308.5 387 46.8
Mapoly0097s0089 Marchantia polymorpha HOM05D006113 ORTHO05D007828 2.7e-81 306.6 348 47.1
Zm00001eb335220 Zea mays HOM05D006113 ORTHO05D007828 4.1e-77 292.7 354 48.6
Os01g0127300 Oryza sativa ssp. japonica HOM05D006113 ORTHO05D007828 1.6e-73 280.8 347 46.7
AagrBONN_evm.TU.Sc2ySwM_228.790 Anthoceros agrestis HOM05D006113 ORTHO05D007828 3.6e-73 279.6 359 44.0
TPR.G17447 Trifolium pratense HOM05D006113 ORTHO05D007828 6.7e-72 275.4 256 56.6
Pp3c12_11290 Physcomitrium patens HOM05D006113 ORTHO05D007828 7.4e-71 271.9 361 44.6
SMO356G0179 Selaginella moellendorffii HOM05D006113 ORTHO05D007828 5.9e-68 262.3 359 41.2
Glyma.01G199500 Glycine max HOM05D006113 ORTHO05D007828 2.7e-65 253.4 208 62.0
CBR_g5705 Chara braunii HOM05D006113 ORTHO05D007828 1.8e-61 240.7 343 40.2
BcaC05g27849 Brassica carinata HOM05D006113 ORTHO05D007828 7.0e-61 238.8 298 48.0
CBR_g5706 Chara braunii HOM05D006113 ORTHO05D007828 2.0e-60 237.3 343 40.2
ATR0680G232 Amborella trichopoda HOM05D006113 ORTHO05D007828 7.0e-53 212.2 159 64.8
Cre12.g513950 Chlamydomonas reinhardtii HOM05D006113 ORTHO05D007828 7.7e-52 208.8 333 37.2
GSVIVG01015822001 Vitis vinifera HOM05D006113 ORTHO05D007828 1.7e-46 191.0 114 78.1
MCO11G391 Micromonas commoda HOM05D006113 ORTHO05D007828 8.3e-46 188.7 321 36.8
PRCOL_00003470 Prasinoderma coloniale HOM05D006113 ORTHO05D007828 4.2e-42 176.4 362 32.9
QL12p004317 Quercus lobata HOM05D006113 ORTHO05D007828 6.3e-38 162.5 141 59.6
TPR.G7828 Trifolium pratense HOM05D006113 ORTHO05D007828 1.1e-37 161.8 92 82.6
AUR62018750 Chenopodium quinoa HOM05D006113 ORTHO05D007828 7.7e-36 155.6 89 77.5
Cpa.g.c32163 Carica papaya HOM05D006113 ORTHO05D007828 1.2e-33 148.3 91 74.7
Sed0023119 Sechium edule HOM05D006113 ORTHO05D007828 2.0e-31 141.0 77 87.0
Pp3c4_5260 Physcomitrium patens HOM05D006113 ORTHO05D007828 3.3e-26 123.6 357 28.6
MELO3C003388.2 Cucumis melo HOM05D006113 ORTHO05D007828 4.0e-24 116.7 94 63.8
VMungo0540G2353 Vigna mungo HOM05D006113 ORTHO05D000647 1.9e-21 107.8 70 71.4
AUR62019423 Chenopodium quinoa HOM05D006113 ORTHO05D031674 4.7e-17 93.2 70 61.4
Sabra03G0059600 Salix brachista HOM05D006113 ORTHO05D349999 8.4e-06 55.8 105 36.2


User provided reference genes

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