Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 1.5e-195 686.0 353 100.0
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 7.2e-174 614.0 346 93.1
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 1.4e-145 520.0 314 84.4
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 1.7e-127 459.9 249 95.6
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 4.8e-117 425.2 298 76.2
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 3.0e-111 406.0 315 72.4
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 1.5e-110 403.7 329 67.2
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 1.3e-109 400.6 335 67.8
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 1.3e-109 400.6 331 66.8
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 2.1e-109 399.8 335 67.8
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 6.2e-109 398.3 324 66.7
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 6.2e-109 398.3 324 66.7
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 5.3e-108 395.2 335 67.5
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 5.8e-107 391.7 336 67.6
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 1.1e-105 387.5 339 67.0
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 7.1e-105 384.8 306 68.0
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 2.3e-103 379.8 219 87.7
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 2.3e-103 379.8 328 65.5
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 1.5e-102 377.1 218 89.4
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 4.3e-102 375.6 261 77.0
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 1.1e-100 370.9 221 86.0
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 1.4e-100 370.5 222 85.1
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 3.1e-100 369.4 310 67.7
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 5.3e-100 368.6 229 82.5
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 6.9e-100 368.2 222 85.1
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 1.2e-99 367.5 253 75.5
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 2.6e-99 366.3 222 85.1
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 2.6e-99 366.3 364 59.9
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 5.8e-99 365.2 220 84.1
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 1.0e-98 364.4 220 81.8
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 1.0e-98 364.4 250 76.8
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 1.3e-98 364.0 260 73.8
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 4.9e-98 362.1 226 81.9
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 4.9e-98 362.1 223 81.6
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 6.5e-98 361.7 220 84.5
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 8.4e-98 361.3 219 83.1
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 8.4e-98 361.3 220 84.1
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 1.9e-97 360.1 254 76.8
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 7.1e-97 358.2 402 54.0
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 9.3e-97 357.8 239 77.8
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 9.3e-97 357.8 209 84.7
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 9.3e-97 357.8 232 81.9
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 1.2e-96 357.5 221 81.9
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 2.1e-96 356.7 226 79.6
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 2.1e-96 356.7 271 72.7
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 2.7e-96 356.3 223 81.2
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 3.5e-96 355.9 226 81.0
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 3.5e-96 355.9 222 81.5
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 3.5e-96 355.9 222 81.5
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 4.6e-96 355.5 252 75.8
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 6.0e-96 355.1 227 81.1
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 7.9e-96 354.8 218 83.0
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 7.9e-96 354.8 237 80.2
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 1.3e-95 354.0 270 70.0
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 1.3e-95 354.0 209 83.7
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 2.3e-95 353.2 215 84.2
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 2.3e-95 353.2 222 80.6
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 3.0e-95 352.8 251 74.5
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 5.1e-95 352.1 286 65.4
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 5.1e-95 352.1 221 80.5
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 5.1e-95 352.1 222 82.4
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 5.1e-95 352.1 222 80.6
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 6.7e-95 351.7 221 80.5
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 8.7e-95 351.3 286 65.4
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 8.7e-95 351.3 221 80.5
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 1.5e-94 350.5 231 82.3
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 1.9e-94 350.1 253 77.5
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 1.9e-94 350.1 250 74.0
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 3.3e-94 349.4 253 77.1
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 3.3e-94 349.4 231 82.3
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 3.3e-94 349.4 261 70.5
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 4.3e-94 349.0 319 65.2
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 7.4e-94 348.2 333 60.7
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 2.1e-93 346.7 265 69.8
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 2.8e-93 346.3 252 71.0
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 2.8e-93 346.3 231 81.0
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 4.8e-93 345.5 315 63.5
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 4.8e-93 345.5 283 66.8
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 6.3e-93 345.1 313 63.3
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 8.2e-93 344.7 229 81.2
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 8.2e-93 344.7 255 70.2
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 1.1e-92 344.4 220 78.2
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 1.4e-92 344.0 226 77.9
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 1.8e-92 343.6 229 81.2
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 2.4e-92 343.2 261 72.0
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 3.1e-92 342.8 227 79.7
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 3.1e-92 342.8 231 77.1
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 1.2e-91 340.9 258 69.0
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 3.4e-91 339.3 262 71.4
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 4.5e-91 339.0 206 85.4
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 4.5e-91 339.0 270 67.0
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 7.6e-91 338.2 206 85.4
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 1.0e-90 337.8 223 80.3
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 1.7e-90 337.0 231 78.8
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 2.2e-90 336.7 251 70.1
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 6.5e-90 335.1 251 70.1
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 1.9e-89 333.6 267 67.0
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 2.5e-89 333.2 222 75.2
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 3.2e-89 332.8 287 64.5
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 3.0e-87 326.2 319 61.1
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 1.5e-86 323.9 305 61.0
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 2.5e-86 323.2 188 85.6
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 5.7e-86 322.0 204 82.4
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 2.1e-80 303.5 165 91.5
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 8.2e-77 291.6 210 73.8
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 2.0e-75 287.0 210 71.9
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 2.6e-75 286.6 227 68.3
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 1.0e-74 284.6 219 65.8
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 5.7e-70 268.9 227 67.4
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 1.7e-66 257.3 183 68.3
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 1.8e-63 247.3 185 64.9
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 4.0e-63 246.1 142 84.5
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 1.2e-54 218.0 165 64.2
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 5.4e-52 209.1 189 56.1
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 3.5e-51 206.5 255 47.5
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 5.0e-50 202.6 181 54.7
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 8.9e-47 191.8 177 52.5
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 4.4e-46 189.5 206 48.5
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 8.3e-45 185.3 117 82.9
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 6.1e-40 169.1 143 64.3
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 1.0e-34 151.8 158 56.3
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 1.3e-26 124.8 143 41.3
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 6.8e-23 112.5 65 86.2
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 1.7e-21 107.8 79 78.5
TPR.G20530 Trifolium pratense HOM05D006403 ORTHO05D008130 1.6e-19 101.3 94 57.4
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 2.5e-17 94.0 53 86.8
Lalb_Chr05g0214601 Lupinus albus HOM05D002462 ORTHO05D002893 5.8e-06 56.2 126 25.4


User provided reference genes

Program Settings