Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 5.1e-47 190.7 92 100.0
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 1.1e-33 146.4 69 100.0
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 1.1e-33 146.4 69 100.0
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 3.6e-32 141.4 69 95.7
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 4.7e-32 141.0 69 95.7
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 4.7e-32 141.0 69 95.7
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 4.7e-32 141.0 69 94.2
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 1.0e-31 139.8 69 94.2
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 1.8e-31 139.0 69 94.2
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 4.0e-31 137.9 69 92.8
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 4.0e-31 137.9 69 92.8
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 5.2e-31 137.5 69 91.3
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 6.7e-31 137.1 69 92.8
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 6.7e-31 137.1 69 91.3
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 6.7e-31 137.1 69 91.3
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 6.7e-31 137.1 69 91.3
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 8.8e-31 136.7 68 92.6
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 1.2e-30 136.3 69 91.3
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 1.2e-30 136.3 69 92.8
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 1.5e-30 136.0 69 92.8
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 2.0e-30 135.6 69 92.8
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 2.6e-30 135.2 69 91.3
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 2.6e-30 135.2 69 92.8
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 2.6e-30 135.2 69 91.3
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 3.3e-30 134.8 69 91.3
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 4.4e-30 134.4 69 91.3
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 5.7e-30 134.0 69 91.3
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 7.5e-30 133.7 69 89.9
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 9.7e-30 133.3 69 89.9
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 9.7e-30 133.3 69 91.3
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 9.7e-30 133.3 69 91.3
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 1.3e-29 132.9 69 89.9
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 1.3e-29 132.9 69 89.9
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 1.3e-29 132.9 69 89.9
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.3e-29 132.9 69 88.4
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 1.7e-29 132.5 69 91.3
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 1.7e-29 132.5 69 88.4
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 1.7e-29 132.5 69 88.4
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 2.2e-29 132.1 69 89.9
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 2.8e-29 131.7 69 88.4
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 2.8e-29 131.7 69 88.4
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 2.8e-29 131.7 69 88.4
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 3.7e-29 131.3 69 89.9
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 3.7e-29 131.3 69 88.4
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 3.7e-29 131.3 69 87.0
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 4.8e-29 131.0 69 88.4
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.8e-29 131.0 69 88.4
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.8e-29 131.0 69 88.4
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.8e-29 131.0 69 88.4
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.8e-29 131.0 69 88.4
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.8e-29 131.0 69 88.4
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 4.8e-29 131.0 69 89.9
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 4.8e-29 131.0 69 87.0
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 4.8e-29 131.0 69 87.0
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 6.3e-29 130.6 69 88.4
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 8.2e-29 130.2 69 89.9
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 8.2e-29 130.2 69 85.5
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 8.2e-29 130.2 69 87.0
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 1.1e-28 129.8 69 84.1
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 1.1e-28 129.8 69 87.0
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 1.4e-28 129.4 69 88.4
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 1.4e-28 129.4 69 88.4
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.8e-28 129.0 67 91.0
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 1.8e-28 129.0 69 87.0
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 1.8e-28 129.0 69 87.0
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 1.8e-28 129.0 69 85.5
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 2.4e-28 128.6 69 87.0
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 2.4e-28 128.6 69 87.0
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 2.4e-28 128.6 69 85.5
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 2.4e-28 128.6 69 85.5
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 2.4e-28 128.6 69 85.5
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 2.4e-28 128.6 69 85.5
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 2.4e-28 128.6 69 85.5
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 2.4e-28 128.6 69 87.0
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 2.4e-28 128.6 69 87.0
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.4e-28 128.6 69 85.5
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.4e-28 128.6 69 85.5
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 2.4e-28 128.6 69 85.5
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 2.4e-28 128.6 69 87.0
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 3.1e-28 128.3 69 85.5
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 3.1e-28 128.3 69 85.5
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 3.1e-28 128.3 69 85.5
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 3.1e-28 128.3 69 87.0
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 3.1e-28 128.3 69 87.0
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 4.1e-28 127.9 69 84.1
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 4.1e-28 127.9 69 87.0
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 4.1e-28 127.9 69 88.4
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 5.3e-28 127.5 69 84.1
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 5.3e-28 127.5 69 84.1
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 7.0e-28 127.1 69 87.0
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 9.1e-28 126.7 69 84.1
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 9.1e-28 126.7 69 84.1
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 9.1e-28 126.7 69 85.5
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 1.2e-27 126.3 69 84.1
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 1.6e-27 125.9 69 85.5
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 2.0e-27 125.6 69 84.1
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 2.0e-27 125.6 69 84.1
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.0e-27 125.6 69 85.5
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 3.5e-27 124.8 69 82.6
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 3.5e-27 124.8 69 82.6
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 5.9e-27 124.0 69 85.5
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 5.9e-27 124.0 69 84.1
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 5.9e-27 124.0 69 84.1
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 7.7e-27 123.6 69 84.1
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 1.3e-26 122.9 69 82.6
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 2.2e-26 122.1 69 84.1
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 2.2e-26 122.1 69 84.1
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 2.9e-26 121.7 68 82.4
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 2.9e-26 121.7 69 81.2
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 3.8e-26 121.3 76 77.6
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 5.0e-26 120.9 69 82.6
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 1.9e-25 119.0 64 85.9
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 1.2e-24 116.3 67 82.1
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 1.6e-24 115.9 59 91.5
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 1.6e-24 115.9 59 91.5
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 1.6e-24 115.9 60 90.0
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 2.1e-24 115.5 60 90.0
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 2.1e-24 115.5 62 87.1
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 2.7e-24 115.2 61 86.9
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 4.7e-24 114.4 60 88.3
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 3.0e-23 111.7 60 86.7
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 2.0e-22 109.0 60 83.3
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 8.3e-21 103.6 60 78.3
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.7e-18 95.9 70 68.6
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 1.5e-17 92.8 70 67.1
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 8.8e-15 83.6 72 58.3
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 1.3e-10 69.7 44 70.5


User provided reference genes

Program Settings