Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G013980 Citrullus lanatus HOM05D004078 ORTHO05D150179 1.7e-196 689.1 338 100.0
Sed0015343 Sechium edule HOM05D004078 ORTHO05D004823 2.7e-85 319.7 369 52.6
Duzib116G0649 Durio zibethinus HOM05D004078 ORTHO05D004823 3.4e-64 249.6 352 42.9
CiPaw.07G143000 Carya illinoinensis HOM05D004078 ORTHO05D004823 7.6e-64 248.4 358 41.9
Cfa014016 Carpinus fangiana HOM05D004078 ORTHO05D004823 6.5e-63 245.4 358 40.2
Duzib093G0900 Durio zibethinus HOM05D004078 ORTHO05D004823 3.2e-62 243.0 358 41.6
QL02p013034 Quercus lobata HOM05D004078 ORTHO05D004823 4.2e-62 242.7 358 40.2
Haze_22719 Corylus avellana HOM05D004078 ORTHO05D004823 5.5e-62 242.3 358 40.2
Dinv31900 Davidia involucrata HOM05D004078 ORTHO05D004823 3.5e-61 239.6 365 39.5
Potri.005G246300 Populus trichocarpa HOM05D004078 ORTHO05D004823 7.9e-61 238.4 352 42.0
TAR376G0337 Trochodendron aralioides HOM05D004078 ORTHO05D004823 3.0e-60 236.5 384 38.5
Sabra05G0190400 Salix brachista HOM05D004078 ORTHO05D004823 5.1e-60 235.7 352 41.5
Thecc.08G052700 Theobroma cacao HOM05D004078 ORTHO05D004823 8.7e-60 235.0 358 40.5
COL.COLO4_26076 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.5e-59 234.2 358 41.1
TAR628G1171 Trochodendron aralioides HOM05D004078 ORTHO05D004823 3.3e-59 233.0 360 40.3
Nn5g30856 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.3e-58 231.1 378 38.6
Hma1.2p1_0023F.1_g015860 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 2.1e-58 230.3 351 39.6
Atru.chr13.207 Acer truncatum HOM05D004078 ORTHO05D004823 6.3e-58 228.8 354 38.7
Rhsim06G0011500 Rhododendron simsii HOM05D004078 ORTHO05D004823 8.2e-58 228.4 358 38.8
Manes.18G008900 Manihot esculenta HOM05D004078 ORTHO05D004823 4.1e-57 226.1 352 38.9
CANSAT25G3530 Cannabis sativa HOM05D004078 ORTHO05D004823 1.5e-56 224.2 363 39.4
CSS0030403 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 2.6e-56 223.4 351 39.0
Aqoxy6G01920 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 5.9e-56 222.2 366 38.8
MBI09_g17152_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 5.9e-56 222.2 362 39.2
MBI05_g32275_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 1.1e-54 218.0 388 37.6
MELO3C011335.2 Cucumis melo HOM05D004078 ORTHO05D004823 3.2e-54 216.5 377 37.9
Lalb_Chr08g0246321 Lupinus albus HOM05D004078 ORTHO05D004823 3.2e-54 216.5 356 38.8
Glyma.04G020200 Glycine max HOM05D004078 ORTHO05D004823 4.6e-53 212.6 357 38.7
Actinidia16270 Actinidia chinensis HOM05D004078 ORTHO05D004823 1.8e-52 210.7 357 37.0
TWI12G0461 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 2.3e-52 210.3 358 39.1
TWI56G0120 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 2.3e-52 210.3 361 39.1
TWI56G0218 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 2.3e-52 210.3 361 39.1
Hma1.2p1_0028F.1_g017320 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 3.9e-52 209.5 374 36.9
TPR.G38148 Trifolium pratense HOM05D004078 ORTHO05D004823 2.5e-51 206.8 354 38.1
Atru.chr13.206 Acer truncatum HOM05D004078 ORTHO05D004823 4.3e-51 206.1 354 37.6
Rhsim06G0011400 Rhododendron simsii HOM05D004078 ORTHO05D004823 7.4e-51 205.3 307 39.4
TPR.G38230 Trifolium pratense HOM05D004078 ORTHO05D004823 7.4e-51 205.3 354 37.3
Glyma.06G020300 Glycine max HOM05D004078 ORTHO05D004823 1.7e-50 204.1 357 37.3
Sed0013676 Sechium edule HOM05D004078 ORTHO05D004823 1.7e-50 204.1 368 37.0
ClCG08G013990 Citrullus lanatus HOM05D004078 ORTHO05D004823 4.8e-50 202.6 376 36.7
Phvul.009G020400 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 8.2e-50 201.8 353 36.5
Phvul.009G020500 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 1.4e-49 201.1 354 36.7
TWI56G1016 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 1.4e-49 201.1 359 39.3
VMungo1309G0831 Vigna mungo HOM05D004078 ORTHO05D004823 5.3e-49 199.1 360 36.1
arahy.Tifrunner.gnm1.ann1.GGEE3T Arachis hypogaea HOM05D004078 ORTHO05D004823 9.1e-49 198.4 354 36.4
Potri.002G015800 Populus trichocarpa HOM05D004078 ORTHO05D004823 1.5e-48 197.6 335 37.9
Medtr3g114870 Medicago truncatula HOM05D004078 ORTHO05D004823 2.6e-48 196.8 354 36.4
Nn5g27926 Nelumbo nucifera HOM05D004078 ORTHO05D004823 7.7e-48 195.3 360 35.6
Dinv31901 Davidia involucrata HOM05D004078 ORTHO05D004823 3.8e-47 193.0 347 36.3
Nn5g27925 Nelumbo nucifera HOM05D004078 ORTHO05D004823 8.5e-47 191.8 361 35.2
ATR0661G241 Amborella trichopoda HOM05D004078 ORTHO05D004823 7.2e-46 188.7 359 36.2
TPR.G27976 Trifolium pratense HOM05D004078 ORTHO05D004823 1.2e-45 188.0 339 36.6
Hma1.2p1_0023F.1_g015830 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.6e-45 187.6 336 36.6
Thecc.08G052600 Theobroma cacao HOM05D004078 ORTHO05D004823 2.1e-45 187.2 358 36.9
TPR.G30061 Trifolium pratense HOM05D004078 ORTHO05D004823 2.1e-45 187.2 353 36.0
Lalb_Chr23g0265921 Lupinus albus HOM05D004078 ORTHO05D004823 1.4e-44 184.5 352 36.4
PGSC0003DMG400009959 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.8e-44 184.1 347 35.2
CsaV3_2G024480 Cucumis sativus L. HOM05D004078 ORTHO05D004823 2.3e-44 183.7 324 36.7
Sopen04g035680 Solanum pennellii HOM05D004078 ORTHO05D004823 2.3e-44 183.7 349 34.7
PSO423G0267 Papaver somniferum HOM05D004078 ORTHO05D004823 3.0e-44 183.3 355 36.3
Solyc04g082030.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 3.0e-44 183.3 349 34.7
TPR.G27977 Trifolium pratense HOM05D004078 ORTHO05D004823 4.4e-43 179.5 355 34.4
PSO541G4079 Papaver somniferum HOM05D004078 ORTHO05D004823 5.7e-43 179.1 378 34.4
Nitab4.5_0003280g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 7.4e-43 178.7 347 34.3
COL.COLO4_15294 Corchorus olitorius HOM05D004078 ORTHO05D004823 3.7e-42 176.4 339 36.3
COL.COLO4_15293 Corchorus olitorius HOM05D004078 ORTHO05D004823 4.8e-42 176.0 342 36.8
CAN.G311.82 Capsicum annuum HOM05D004078 ORTHO05D004823 6.3e-42 175.6 347 33.7
CSS0015589 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 5.3e-41 172.6 306 38.2
SEGI_03953 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 5.3e-41 172.6 375 32.8
SEGI_37656 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 5.3e-41 172.6 375 32.8
Peaxi162Scf00174g00105 Petunia axillaris HOM05D004078 ORTHO05D004823 9.1e-41 171.8 349 34.1
Thecc.05G287800 Theobroma cacao HOM05D004078 ORTHO05D004823 2.0e-40 170.6 346 35.8
Lj1g0007451 Lotus japonicus HOM05D004078 ORTHO05D004823 2.6e-40 170.2 352 34.1
Duzib177G0502 Durio zibethinus HOM05D004078 ORTHO05D004823 2.2e-39 167.2 353 34.8
Gohir.D11G264300 Gossypium hirsutum HOM05D004078 ORTHO05D004823 3.8e-39 166.4 352 34.7
Psat0s1018g0040 Pisum sativum HOM05D004078 ORTHO05D004823 5.0e-39 166.0 362 34.0
Gorai.007G284400 Gossypium raimondii HOM05D004078 ORTHO05D004823 8.5e-39 165.2 345 35.4
COL.COLO4_15291 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.1e-38 164.9 337 34.7
Gohir.A11G254700 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.1e-38 164.9 345 35.4
Aqoxy5G01089 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.4e-38 164.5 347 32.6
TAR091G0003 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.9e-38 164.1 232 41.4
Gorai.007G284300 Gossypium raimondii HOM05D004078 ORTHO05D004823 2.5e-38 163.7 352 34.4
Aqoxy5G01091 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 4.2e-38 162.9 343 32.9
Actinidia17020 Actinidia chinensis HOM05D004078 ORTHO05D004823 4.7e-37 159.5 321 34.3
Duzib177G0280 Durio zibethinus HOM05D004078 ORTHO05D004823 8.0e-37 158.7 353 33.7
Gohir.A11G254600 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.4e-36 157.9 344 34.9
MD05G1034000 Malus domestica HOM05D004078 ORTHO05D004823 1.8e-36 157.5 364 32.4
Ca_15452_v3 Cicer arietinum L. HOM05D004078 ORTHO05D004823 8.8e-36 155.2 309 34.6
Aqoxy2G02302 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 7.4e-35 152.1 321 34.3
Aqoxy2G02303 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 9.7e-35 151.8 325 32.9
Ciclev10031824m.g Citrus clementina HOM05D004078 ORTHO05D004823 3.7e-34 149.8 337 33.2
Nitab4.5_0001270g0090 Nicotiana tabacum HOM05D004078 ORTHO05D004823 3.7e-34 149.8 317 33.1
Zm00001eb319850 Zea mays HOM05D004078 ORTHO05D004823 1.4e-33 147.9 378 29.6
RcHm_v2.0_Chr4g0431831 Rosa chinensis HOM05D004078 ORTHO05D004823 1.8e-33 147.5 351 31.3
CSS0003326 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 4.1e-33 146.4 361 33.2
CSS0037182 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 5.3e-33 146.0 355 33.8
Gohir.D11G264400 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.2e-32 144.8 334 33.8
Prupe.8G044900 Prunus persica HOM05D004078 ORTHO05D004823 2.0e-32 144.1 344 32.3
RcHm_v2.0_Chr3g0485811 Rosa chinensis HOM05D004078 ORTHO05D004823 2.2e-31 140.6 380 29.7
FAN12G2492 Fragaria x ananassa HOM05D004078 ORTHO05D004823 2.9e-31 140.2 372 30.9
Os09g0543400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 2.9e-31 140.2 379 30.3
PSO675G8915 Papaver somniferum HOM05D004078 ORTHO05D004823 2.9e-31 140.2 228 40.4
FAN12G4190 Fragaria x ananassa HOM05D004078 ORTHO05D004823 3.8e-31 139.8 354 31.1
Ciclev10020253m.g Citrus clementina HOM05D004078 ORTHO05D004823 5.0e-31 139.4 363 31.1
FvH4_4g27890 Fragaria vesca HOM05D004078 ORTHO05D004823 5.0e-31 139.4 354 31.1
MBI18_g05694_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 8.5e-31 138.7 360 30.8
FvH4_4g24750 Fragaria vesca HOM05D004078 ORTHO05D004823 1.5e-30 137.9 377 30.0
MD05G1036600 Malus domestica HOM05D004078 ORTHO05D004823 1.5e-30 137.9 325 31.7
RcHm_v2.0_Chr7g0227121 Rosa chinensis HOM05D004078 ORTHO05D004823 1.9e-30 137.5 343 30.9
Thecc.06G067400 Theobroma cacao HOM05D004078 ORTHO05D004823 7.2e-30 135.6 226 39.4
FvH4_4g24730 Fragaria vesca HOM05D004078 ORTHO05D004823 9.4e-30 135.2 357 30.8
FAN17G0799 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.2e-29 134.8 352 30.4
FAN07G1093 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.6e-29 134.4 375 29.9
Zm00001eb114090 Zea mays HOM05D004078 ORTHO05D004823 1.6e-29 134.4 385 28.6
RcHm_v2.0_Chr3g0485831 Rosa chinensis HOM05D004078 ORTHO05D004823 2.7e-29 133.7 380 28.2
Medtr3g114890 Medicago truncatula HOM05D004078 ORTHO05D004823 1.4e-28 131.3 227 38.8
TAR627G0362 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.8e-28 131.0 356 27.8
RcHm_v2.0_Chr3g0485901 Rosa chinensis HOM05D004078 ORTHO05D004823 3.0e-28 130.2 376 28.2
MSTRG.1142 Avicennia marina HOM05D004078 ORTHO05D004823 4.0e-28 129.8 307 32.2
Manes.13G003000 Manihot esculenta HOM05D004078 ORTHO05D004823 6.7e-28 129.0 355 30.1
FvH4_4g24751 Fragaria vesca HOM05D004078 ORTHO05D004823 2.0e-27 127.5 351 29.6
Sopen03g029030 Solanum pennellii HOM05D004078 ORTHO05D004823 4.4e-27 126.3 346 29.2
TAR627G0085 Trochodendron aralioides HOM05D004078 ORTHO05D004823 4.4e-27 126.3 332 28.3
FAN12G0110 Fragaria x ananassa HOM05D004078 ORTHO05D004823 5.7e-27 125.9 351 29.9
Peaxi162Scf00171g10044 Petunia axillaris HOM05D004078 ORTHO05D004823 7.5e-27 125.6 358 30.4
Sopen03g029020 Solanum pennellii HOM05D004078 ORTHO05D004823 7.5e-27 125.6 346 28.9
Sopen03g029040 Solanum pennellii HOM05D004078 ORTHO05D004823 7.5e-27 125.6 346 28.9
Sopen03g029050 Solanum pennellii HOM05D004078 ORTHO05D004823 7.5e-27 125.6 346 28.9
Solyc03g098300.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 1.7e-26 124.4 345 29.9
CAN.G637.4 Capsicum annuum HOM05D004078 ORTHO05D004823 2.2e-26 124.0 346 28.3
Peaxi162Scf00479g00072 Petunia axillaris HOM05D004078 ORTHO05D004823 2.2e-26 124.0 330 30.6
Nitab4.5_0001180g0140 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.4e-25 121.3 345 30.7
Zm00001eb331690 Zea mays HOM05D004078 ORTHO05D004823 1.4e-25 121.3 380 27.4
Nitab4.5_0005973g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.8e-25 120.9 345 29.3
CAN.G637.1 Capsicum annuum HOM05D004078 ORTHO05D004823 1.2e-24 118.2 313 29.7
Sopen03g029060 Solanum pennellii HOM05D004078 ORTHO05D004823 3.5e-24 116.7 351 30.5
AagrBONN_evm.TU.Sc2ySwM_340.331 Anthoceros agrestis HOM05D004078 ORTHO05D004823 4.5e-24 116.3 327 29.7
Mapoly0001s0543 Marchantia polymorpha HOM05D004078 ORTHO05D000931 1.7e-23 114.4 377 26.8
Solyc03g098310.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 2.9e-23 113.6 349 28.7
Prupe.8G048200 Prunus persica HOM05D004078 ORTHO05D004823 1.1e-22 111.7 309 29.8
Thecc.05G287700 Theobroma cacao HOM05D004078 ORTHO05D004823 1.5e-22 111.3 242 35.5
Sopen03g029010 Solanum pennellii HOM05D004078 ORTHO05D004823 3.2e-22 110.2 221 33.9
SMO171G0020 Selaginella moellendorffii HOM05D004078 ORTHO05D004823 9.4e-22 108.6 329 27.7
Nn7g37243 Nelumbo nucifera HOM05D004078 ORTHO05D004823 2.7e-21 107.1 192 37.5
QL02p013060 Quercus lobata HOM05D004078 ORTHO05D004823 4.7e-21 106.3 124 49.2
GSVIVG01015447001 Vitis vinifera HOM05D004078 ORTHO05D004823 1.0e-20 105.1 282 30.9
CDE02G0789 Ceratophyllum demersum HOM05D004078 ORTHO05D004823 1.8e-20 104.4 233 31.8
COL.COLO4_24641 Corchorus olitorius HOM05D004078 ORTHO05D004823 3.4e-19 100.1 194 34.0
PRCOL_00001954 Prasinoderma coloniale HOM05D004078 ORTHO05D004823 3.4e-19 100.1 330 27.0
MCO05G310 Micromonas commoda HOM05D004078 ORTHO05D004823 3.1e-17 93.6 356 25.3
Prupe.8G047700 Prunus persica HOM05D004078 ORTHO05D004823 9.1e-17 92.0 242 28.1
PGSC0003DMG400031047 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.3e-15 88.2 351 27.4
Cre16.g683371 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 1.2e-13 81.6 329 24.6
GSVIVG01008730001 Vitis vinifera HOM05D004078 ORTHO05D004823 6.1e-13 79.3 72 41.7
Cfa026818 Carpinus fangiana HOM05D004078 ORTHO05D004823 8.0e-13 79.0 322 25.2
TPR.G7712 Trifolium pratense HOM05D004078 ORTHO05D004823 1.4e-12 78.2 64 51.6
Os02g0482400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 4.0e-12 76.6 243 27.6
Cre03.g159500 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 6.8e-12 75.9 317 24.3
RcHm_v2.0_Chr3g0490331 Rosa chinensis HOM05D004078 ORTHO05D004823 3.4e-11 73.6 112 39.3
CAN.G20.32 Capsicum annuum HOM05D004078 ORTHO05D004823 5.7e-11 72.8 181 32.6
PGSC0003DMG400025628 Solanum tuberosum HOM05D004078 ORTHO05D004823 4.1e-09 66.6 192 29.7
Nn7g37247 Nelumbo nucifera HOM05D004078 ORTHO05D004823 2.7e-08 63.9 93 41.9
Hma1.2p1_0023F.1_g015870 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.3e-07 61.6 139 36.7
RcHm_v2.0_Chr3g0485801 Rosa chinensis HOM05D004078 ORTHO05D004823 3.8e-07 60.1 104 36.5
AagrBONN_evm.TU.Sc2ySwM_340.327 Anthoceros agrestis HOM05D004078 ORTHO05D004823 5.0e-07 59.7 153 29.4
Prupe.8G048000 Prunus persica HOM05D004078 ORTHO05D004823 9.5e-06 55.5 64 45.3


User provided reference genes

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