Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 4.2e-281 970.7 492 100.0
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 4.1e-268 927.5 492 95.7
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 7.0e-260 900.2 485 93.6
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 3.3e-257 891.3 506 90.3
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 3.6e-232 808.1 487 81.1
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 2.6e-230 802.0 486 82.5
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 3.4e-230 801.6 473 82.5
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 5.8e-230 800.8 470 82.6
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.7e-229 799.3 486 81.1
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 6.4e-229 797.3 483 80.3
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 8.4e-229 797.0 473 82.0
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 7.1e-228 793.9 465 81.9
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 1.2e-227 793.1 471 81.3
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 1.6e-227 792.7 491 79.8
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 1.6e-227 792.7 486 80.9
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 2.1e-227 792.3 491 79.4
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 6.0e-227 790.8 477 82.0
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 7.8e-227 790.4 461 83.1
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 1.0e-226 790.0 473 80.8
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 1.3e-226 789.6 489 80.0
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 1.3e-226 789.6 491 79.2
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 2.3e-226 788.9 465 81.5
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 3.0e-226 788.5 467 82.0
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 3.0e-226 788.5 462 81.8
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 3.9e-226 788.1 467 81.8
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 3.9e-226 788.1 475 81.7
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 5.1e-226 787.7 469 81.2
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.1e-225 786.6 467 81.8
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 1.1e-225 786.6 489 79.8
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 1.5e-225 786.2 460 82.4
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.5e-225 786.2 485 79.0
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.5e-225 786.2 472 80.9
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.9e-225 785.8 490 79.2
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 3.3e-225 785.0 467 81.2
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 4.3e-225 784.6 496 77.4
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 5.6e-225 784.3 486 79.4
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 7.3e-225 783.9 486 78.2
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 9.6e-225 783.5 484 78.9
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 9.6e-225 783.5 458 82.5
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 1.6e-224 782.7 461 82.2
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 3.6e-224 781.6 461 82.0
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 4.8e-224 781.2 462 81.4
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 6.2e-224 780.8 461 81.3
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 1.8e-223 779.2 482 79.0
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.8e-223 779.2 491 79.4
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 1.8e-223 779.2 485 78.8
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 4.0e-223 778.1 476 79.2
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 9.0e-223 776.9 484 78.7
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 1.2e-222 776.5 480 78.8
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 2.0e-222 775.8 491 78.8
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 2.0e-222 775.8 469 78.7
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 5.8e-222 774.2 464 80.2
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 5.8e-222 774.2 466 80.3
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 7.6e-222 773.9 474 79.5
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 7.6e-222 773.9 487 78.2
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.7e-221 772.7 475 78.3
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 1.7e-221 772.7 473 79.1
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.2e-221 772.3 523 74.4
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 4.9e-221 771.2 509 76.2
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 4.9e-221 771.2 460 80.9
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 6.4e-221 770.8 471 79.6
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 6.4e-221 770.8 471 78.8
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 8.4e-221 770.4 476 78.4
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.9e-220 769.2 469 79.7
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 3.2e-220 768.5 460 81.5
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 3.2e-220 768.5 474 78.3
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 4.2e-220 768.1 459 80.4
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 9.3e-220 766.9 459 80.6
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.5e-219 765.0 523 73.8
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 3.5e-219 765.0 460 80.0
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 4.6e-219 764.6 460 80.0
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 6.0e-219 764.2 486 77.2
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 1.8e-218 762.7 474 78.7
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 1.1e-217 760.0 459 79.5
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.3e-216 756.5 491 76.2
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.1e-216 755.7 462 77.7
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 2.8e-216 755.4 482 78.0
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 4.8e-216 754.6 459 79.1
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 8.1e-216 753.8 481 76.3
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 2.4e-215 752.3 462 77.3
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 3.1e-215 751.9 481 76.1
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 4.0e-215 751.5 462 77.1
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 9.0e-215 750.4 487 74.1
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 1.5e-214 749.6 462 76.6
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 2.6e-214 748.8 487 73.9
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 2.6e-214 748.8 487 73.7
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 4.5e-214 748.0 492 75.0
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 5.8e-214 747.7 462 76.8
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 7.6e-214 747.3 474 75.1
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 7.6e-214 747.3 462 76.6
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 9.9e-214 746.9 460 77.0
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 4.9e-213 744.6 487 74.9
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 1.4e-212 743.0 462 76.2
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 3.2e-212 741.9 466 79.6
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 3.5e-211 738.4 517 71.2
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 1.0e-210 736.9 513 71.7
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 5.1e-210 734.6 502 71.3
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 6.7e-210 734.2 482 73.0
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 3.7e-208 728.4 491 73.1
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 6.2e-208 727.6 461 75.9
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 2.9e-205 718.8 476 72.9
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 4.2e-204 714.9 469 72.7
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 7.1e-204 714.1 473 72.1
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 6.7e-202 707.6 461 73.1
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 1.1e-201 706.8 472 72.5
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 1.9e-201 706.1 467 75.8
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 6.5e-197 691.0 458 70.5
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 7.2e-196 687.6 417 78.9
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 3.6e-195 685.3 412 79.4
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 7.4e-193 677.6 459 72.5
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 1.3e-192 676.8 467 70.7
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 2.6e-190 669.1 465 70.5
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.7e-189 666.4 383 84.1
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 1.7e-189 666.4 447 72.7
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 1.4e-188 663.3 491 70.5
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 7.2e-188 661.0 416 78.8
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 9.7e-185 650.6 387 83.2
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 7.7e-182 641.0 371 82.2
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 5.0e-181 638.3 373 81.2
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 1.4e-180 636.7 739 49.3
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 5.5e-180 634.8 455 68.8
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 5.2e-178 628.2 472 68.4
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 2.2e-176 622.9 453 65.6
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 5.3e-175 618.2 407 76.7
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 3.3e-169 599.0 426 68.8
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 8.3e-168 594.3 454 67.4
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 5.9e-166 588.2 454 64.8
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 1.4e-159 567.0 346 82.1
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 3.6e-155 552.4 430 68.8
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 1.3e-115 421.0 293 74.1
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 8.1e-115 418.3 330 65.5
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 4.9e-112 409.1 264 76.9
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 1.4e-111 407.5 238 81.1
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 1.0e-93 348.2 458 40.4
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 7.4e-92 342.0 246 72.0
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 4.8e-91 339.3 449 40.1
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.3e-85 321.2 201 76.6
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 5.1e-85 319.3 449 39.6
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 2.3e-77 293.9 225 67.1
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 3.8e-64 250.0 383 42.3
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 9.4e-63 245.4 131 89.3
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 7.0e-58 229.2 145 77.2
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 8.5e-56 222.2 167 66.5
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 1.2e-52 211.8 165 66.1
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 1.3e-51 208.4 196 57.7
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 2.8e-43 180.6 98 87.8
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 2.8e-43 180.6 122 66.4
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 4.9e-43 179.9 133 60.2
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 7.7e-41 172.6 249 41.0
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 6.6e-40 169.5 375 31.5
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 1.0e-37 162.2 119 68.1
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 3.4e-36 157.1 91 81.3
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.9e-31 141.4 124 55.6
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 1.9e-31 141.4 80 80.0
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 4.3e-31 140.2 93 76.3
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 1.0e-29 135.6 100 67.0
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 1.3e-27 128.6 290 30.7
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 1.7e-27 128.3 100 66.0
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 5.4e-26 123.2 74 79.7
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 6.2e-14 83.2 58 63.8
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 9.9e-12 75.9 41 85.4
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 1.3e-11 75.5 43 79.1
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 2.2e-11 74.7 47 72.3
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 8.4e-11 72.8 63 61.9
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 1.9e-07 61.6 35 80.0
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 1.6e-06 58.5 51 60.8


User provided reference genes

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