Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.4e-74 282.7 131 100.0
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 1.2e-65 253.1 126 94.4
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 8.3e-59 230.3 126 86.5
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 8.6e-56 220.3 126 82.5
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 4.3e-55 218.0 125 77.6
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 4.3e-55 218.0 126 80.2
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 5.6e-55 217.6 126 79.4
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 2.1e-54 215.7 127 81.9
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 2.8e-54 215.3 126 79.4
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 3.6e-54 214.9 126 80.2
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 1.4e-53 213.0 126 78.6
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 1.4e-53 213.0 125 79.2
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 2.3e-53 212.2 125 76.8
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 4.0e-53 211.5 125 76.0
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 5.2e-53 211.1 125 75.2
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 6.8e-53 210.7 126 77.8
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 8.9e-53 210.3 126 77.0
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 8.9e-53 210.3 126 77.0
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 1.5e-52 209.5 125 75.2
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 2.0e-52 209.1 125 79.2
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 3.4e-52 208.4 126 76.2
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 4.4e-52 208.0 126 79.4
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 5.8e-52 207.6 128 78.1
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 5.8e-52 207.6 125 75.2
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 7.6e-52 207.2 126 77.8
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 7.6e-52 207.2 126 79.4
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 9.9e-52 206.8 126 75.4
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 9.9e-52 206.8 127 77.2
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 1.7e-51 206.1 126 74.6
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 1.7e-51 206.1 126 75.4
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 1.7e-51 206.1 126 74.6
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 2.2e-51 205.7 125 72.8
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 3.7e-51 204.9 126 77.8
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 3.7e-51 204.9 126 76.2
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 3.7e-51 204.9 126 75.4
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 4.9e-51 204.5 125 74.4
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 4.9e-51 204.5 125 74.4
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 4.9e-51 204.5 126 75.4
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 1.1e-50 203.4 126 77.0
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 1.1e-50 203.4 125 73.6
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 1.9e-50 202.6 126 74.6
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 4.1e-50 201.4 125 71.2
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 5.4e-50 201.1 125 73.6
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 7.1e-50 200.7 126 75.4
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 1.2e-49 199.9 126 73.8
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 1.6e-49 199.5 126 73.0
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 1.6e-49 199.5 126 73.0
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 2.1e-49 199.1 126 73.0
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 2.1e-49 199.1 125 72.8
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 2.7e-49 198.7 125 72.8
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 2.7e-49 198.7 127 74.8
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 3.5e-49 198.4 126 73.8
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 4.6e-49 198.0 125 72.0
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 4.6e-49 198.0 126 74.6
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 1.7e-48 196.1 125 70.4
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 1.7e-48 196.1 126 71.4
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 1.7e-48 196.1 125 71.2
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 3.0e-48 195.3 125 74.4
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 3.9e-48 194.9 115 77.4
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 1.1e-47 193.4 126 72.2
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 1.1e-47 193.4 126 71.4
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 1.1e-47 193.4 125 69.6
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 1.5e-47 193.0 114 78.9
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 1.9e-47 192.6 126 70.6
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 1.9e-47 192.6 126 73.8
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 9.6e-47 190.3 114 71.9
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 1.6e-46 189.5 125 70.4
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 2.8e-46 188.7 113 71.7
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 2.8e-46 188.7 125 69.6
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 3.6e-46 188.3 127 70.1
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 6.2e-46 187.6 126 71.4
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 2.4e-45 185.7 125 68.8
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 8.9e-45 183.7 126 69.8
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 1.2e-44 183.3 113 76.1
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 1.5e-44 183.0 125 67.2
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 1.5e-44 183.0 125 67.2
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 1.5e-44 183.0 115 73.9
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 5.8e-44 181.0 125 67.2
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 5.8e-44 181.0 115 72.2
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 1.4e-42 176.4 124 62.1
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 1.9e-42 176.0 125 64.8
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 4.2e-42 174.9 124 63.7
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 2.1e-41 172.6 125 64.8
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 2.1e-41 172.6 125 64.8
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 2.7e-41 172.2 125 65.6
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 2.7e-41 172.2 125 64.0
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 6.0e-41 171.0 125 63.2
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 1.0e-40 170.2 124 62.9
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 3.0e-40 168.7 125 63.2
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 6.6e-40 167.5 114 65.8
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 1.1e-39 166.8 114 67.5
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 2.5e-39 165.6 150 58.0
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 7.3e-39 164.1 129 61.2
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 6.2e-38 161.0 109 67.9
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 8.1e-38 160.6 121 62.0
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 1.1e-37 160.2 126 60.3
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 3.1e-37 158.7 94 75.5
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 4.0e-37 158.3 115 66.1
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 9.0e-37 157.1 126 61.1
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 5.8e-36 154.5 95 73.7
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.3e-35 153.3 96 76.0
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.7e-35 152.9 122 59.8
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 1.3e-32 143.3 114 62.3
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 1.8e-29 132.9 97 68.0
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 2.4e-29 132.5 158 46.2
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 4.9e-27 124.8 105 60.0
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 4.2e-26 121.7 94 60.6
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 1.6e-25 119.8 85 62.4
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 1.6e-25 119.8 85 62.4
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 2.7e-25 119.0 86 64.0
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 7.9e-25 117.5 76 77.6
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 2.3e-24 115.9 67 73.1
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 2.5e-23 112.5 70 74.3
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 1.6e-22 109.8 59 81.4
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 2.1e-22 109.4 95 54.7
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 5.8e-20 101.3 113 49.6
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 4.6e-17 91.7 143 33.6
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 1.0e-16 90.5 45 82.2
PRCOL_00000380 Prasinoderma coloniale HOM05D005066 ORTHO05D006138 2.5e-15 85.9 130 35.4
SEGI_07968 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 2.5e-15 85.9 60 66.7
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 3.7e-14 82.0 166 28.9
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 1.1e-13 80.5 167 29.3
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 1.4e-10 70.1 59 50.8
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 3.2e-10 68.9 30 93.3
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 9.3e-10 67.4 47 59.6
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 1.3e-08 63.5 48 64.6
FvH4_2g01180 Fragaria vesca HOM05D000347 ORTHO05D001997 1.8e-08 63.2 116 27.6
FAN24G3508 Fragaria x ananassa HOM05D000347 ORTHO05D001997 1.8e-08 63.2 116 27.6
Glyma.12G033100 Glycine max HOM05D000347 ORTHO05D001997 3.0e-08 62.4 111 26.1
FAN15G3271 Fragaria x ananassa HOM05D000347 ORTHO05D001997 3.9e-08 62.0 116 26.7
FAN20G0646 Fragaria x ananassa HOM05D000347 ORTHO05D001997 3.9e-08 62.0 116 26.7
Glyma.11G091500 Glycine max HOM05D000347 ORTHO05D001997 8.7e-08 60.8 111 25.2
FAN27G1321 Fragaria x ananassa HOM05D000347 ORTHO05D001997 1.5e-07 60.1 116 27.6
Ah.01g008430 Amaranthus hybridus HOM05D000347 ORTHO05D001997 1.9e-07 59.7 115 26.1
Cre02.g109150 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 4.3e-07 58.5 56 41.1
AagrBONN_evm.TU.Sc2ySwM_228.219 Anthoceros agrestis HOM05D002302 ORTHO05D002728 1.6e-06 56.6 120 25.8


User provided reference genes

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