Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 1.5e-104 382.9 194 100.0
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 2.9e-92 342.0 200 87.5
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 6.3e-87 324.3 247 70.9
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 3.1e-86 322.0 200 82.0
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 1.2e-69 266.9 199 67.8
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 2.7e-69 265.8 200 65.0
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 5.9e-69 264.6 199 67.3
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 3.6e-66 255.4 199 65.8
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 6.1e-66 254.6 199 65.3
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 1.8e-65 253.1 199 65.3
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 2.3e-65 252.7 198 64.6
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 4.0e-65 251.9 200 62.5
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.2e-64 250.4 200 62.0
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 1.5e-64 250.0 196 64.3
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 5.7e-64 248.1 192 63.5
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.3e-63 246.9 192 63.5
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 4.8e-63 245.0 196 64.3
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 6.3e-63 244.6 192 63.0
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 6.3e-63 244.6 198 61.6
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 1.1e-62 243.8 188 66.0
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.4e-62 243.4 200 58.5
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.8e-62 243.0 200 60.5
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 1.8e-62 243.0 196 64.3
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 2.4e-62 242.7 199 64.3
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 5.4e-62 241.5 197 62.9
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 5.4e-62 241.5 200 61.5
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 2.0e-61 239.6 198 60.6
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 2.7e-61 239.2 199 56.8
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 3.5e-61 238.8 200 57.5
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 4.5e-61 238.4 198 61.1
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.0e-60 237.3 205 60.0
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 1.0e-60 237.3 193 60.1
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 1.7e-60 236.5 198 60.6
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 2.9e-60 235.7 200 61.0
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 3.8e-60 235.3 200 59.5
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 5.0e-60 235.0 194 62.4
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 1.5e-59 233.4 194 59.3
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 2.5e-59 232.6 200 55.5
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 3.2e-59 232.3 189 62.4
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 4.2e-59 231.9 193 61.7
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 5.5e-59 231.5 192 62.0
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 5.5e-59 231.5 193 60.6
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 7.2e-59 231.1 200 60.5
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 7.2e-59 231.1 197 60.4
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 7.2e-59 231.1 195 59.5
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 9.4e-59 230.7 194 61.9
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 1.6e-58 229.9 194 59.3
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 1.4e-57 226.9 194 60.3
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 3.0e-57 225.7 200 59.0
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 3.0e-57 225.7 194 60.8
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 4.0e-57 225.3 199 57.3
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 5.2e-57 224.9 190 58.9
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 5.2e-57 224.9 200 57.0
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 6.8e-57 224.6 198 57.1
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 1.2e-56 223.8 200 59.0
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 1.5e-56 223.4 192 58.3
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 4.4e-56 221.9 197 57.9
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 4.4e-56 221.9 202 59.4
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 4.4e-56 221.9 194 58.8
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 7.5e-56 221.1 198 56.6
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 9.8e-56 220.7 197 58.4
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 1.7e-55 219.9 192 57.8
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.2e-55 219.5 188 59.0
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 2.2e-55 219.5 199 51.8
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 2.8e-55 219.2 200 57.0
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 3.7e-55 218.8 198 57.1
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 4.9e-55 218.4 199 54.3
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 6.3e-55 218.0 192 56.2
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 6.3e-55 218.0 198 55.6
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 1.8e-54 216.5 190 57.4
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 4.1e-54 215.3 199 55.3
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 5.4e-54 214.9 195 55.9
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 9.2e-54 214.2 198 54.5
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.2e-53 213.8 201 54.2
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 2.0e-53 213.0 189 56.6
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 2.7e-53 212.6 194 56.7
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 2.7e-53 212.6 199 53.8
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 3.5e-53 212.2 192 56.2
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 4.5e-53 211.8 187 58.3
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 7.7e-53 211.1 199 52.3
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 1.0e-52 210.7 200 55.5
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 1.3e-52 210.3 193 53.9
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 1.3e-52 210.3 192 56.8
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.7e-52 209.9 186 57.0
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.9e-52 209.1 192 57.3
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 3.8e-52 208.8 198 53.5
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 8.6e-52 207.6 200 52.0
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.5e-51 206.1 191 55.0
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 4.3e-51 205.3 187 57.8
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 4.3e-51 205.3 194 52.6
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 7.3e-51 204.5 191 54.5
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 7.3e-51 204.5 191 53.9
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 9.5e-51 204.1 186 54.8
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 1.2e-50 203.8 145 68.3
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.8e-50 202.6 195 53.8
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 3.6e-50 202.2 200 54.5
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 3.6e-50 202.2 188 53.7
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 3.0e-49 199.1 201 51.2
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 1.5e-48 196.8 200 50.0
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 4.4e-48 195.3 201 52.2
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 9.8e-48 194.1 188 53.2
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 3.7e-47 192.2 189 54.0
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.1e-46 190.7 198 50.5
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.4e-46 190.3 195 50.8
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 2.4e-46 189.5 143 65.7
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 3.2e-46 189.1 178 53.9
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 4.1e-46 188.7 193 52.3
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 2.7e-45 186.0 195 48.7
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.7e-45 186.0 192 49.5
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.7e-45 186.0 165 59.4
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 4.6e-45 185.3 192 50.0
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 7.8e-45 184.5 174 54.0
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 7.8e-45 184.5 184 51.1
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 1.0e-44 184.1 191 51.3
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.7e-44 183.3 194 50.0
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 2.3e-44 183.0 179 53.6
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 6.6e-44 181.4 191 51.3
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.1e-43 180.6 191 47.6
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 1.5e-43 180.3 191 49.7
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 1.9e-43 179.9 195 47.2
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 1.9e-43 179.9 191 50.8
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 1.9e-43 179.9 191 50.3
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 2.5e-43 179.5 191 48.7
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 4.3e-43 178.7 191 49.7
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 7.3e-43 177.9 181 53.0
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 1.2e-42 177.2 195 46.7
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 2.1e-42 176.4 195 46.7
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 2.8e-42 176.0 199 48.7
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 3.6e-42 175.6 194 49.0
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 4.7e-42 175.3 195 45.6
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 8.0e-42 174.5 187 48.1
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 1.0e-41 174.1 191 50.8
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 1.4e-41 173.7 189 48.1
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 2.3e-41 172.9 191 45.0
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 2.3e-41 172.9 194 48.5
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 3.1e-41 172.6 191 45.0
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 4.0e-41 172.2 143 58.7
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 5.2e-41 171.8 192 50.0
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.5e-40 170.2 191 45.0
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.6e-40 169.5 189 46.6
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 4.4e-40 168.7 191 45.5
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 5.8e-40 168.3 178 50.0
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 9.8e-40 167.5 136 61.0
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 1.7e-39 166.8 191 44.5
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 2.2e-39 166.4 191 44.5
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.2e-39 166.4 157 56.7
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.2e-39 166.4 189 45.0
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 2.4e-38 162.9 163 53.4
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 3.2e-38 162.5 165 53.3
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 7.8e-37 157.9 150 54.7
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 2.3e-36 156.4 161 50.3
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 8.6e-36 154.5 188 43.1
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 8.6e-36 154.5 188 43.1
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 4.3e-35 152.1 132 54.5
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 5.6e-35 151.8 187 43.9
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.8e-34 149.4 191 46.6
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 1.4e-33 147.1 126 57.9
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 3.1e-33 146.0 191 40.8
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 6.8e-33 144.8 200 43.5
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 4.1e-30 135.6 134 53.7
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 3.3e-27 125.9 191 37.7
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 4.3e-27 125.6 114 54.4
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.6e-24 116.3 203 38.9
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 4.4e-24 115.5 152 44.7
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 3.9e-20 102.4 112 50.0
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 2.8e-18 96.3 192 33.3
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.6e-18 95.9 183 34.4
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 6.9e-17 91.7 183 36.6
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 1.9e-14 83.6 99 41.4
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 1.9e-14 83.6 84 52.4
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 2.7e-13 79.7 200 28.5
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 4.6e-13 79.0 105 43.8
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 7.3e-11 71.6 166 33.1
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.8e-09 67.0 78 44.9
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 6.9e-09 65.1 163 30.1
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 7.6e-08 61.6 173 32.4
FAN12G1760 Fragaria x ananassa HOM05D003838 ORTHO05D004444 8.4e-07 58.2 130 33.8
FvH4_4g02900 Fragaria vesca HOM05D003838 ORTHO05D004444 2.4e-06 56.6 87 44.8


User provided reference genes

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