Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G003160 Citrullus lanatus HOM05D000782 ORTHO05D000571 1.6e-97 359.4 179 100.0
CsaV3_7G022830 Cucumis sativus L. HOM05D000782 ORTHO05D000571 1.7e-83 312.8 176 85.8
MELO3C024977.2 Cucumis melo HOM05D000782 ORTHO05D000571 1.6e-81 306.2 176 83.5
ClCG03G000180 Citrullus lanatus HOM05D000782 ORTHO05D000571 9.0e-80 300.4 210 73.8
Sed0021709 Sechium edule HOM05D000782 ORTHO05D000571 1.4e-77 293.1 178 83.1
Duzib168G2101 Durio zibethinus HOM05D000782 ORTHO05D000571 2.7e-52 209.1 173 64.2
Ciclev10002580m.g Citrus clementina HOM05D000782 ORTHO05D000571 1.1e-48 197.2 180 57.2
Thecc.09G359700 Theobroma cacao HOM05D000782 ORTHO05D000571 2.0e-47 193.0 174 55.7
Atru.chr1.2094 Acer truncatum HOM05D000782 ORTHO05D000571 5.0e-46 188.3 176 55.1
MD11G1060400 Malus domestica HOM05D000782 ORTHO05D000571 1.9e-45 186.4 175 57.7
MD03G1058200 Malus domestica HOM05D000782 ORTHO05D000571 5.5e-45 184.9 174 56.3
Prupe.6G045600 Prunus persica HOM05D000782 ORTHO05D000571 5.5e-45 184.9 175 56.6
GSVIVG01024611001 Vitis vinifera HOM05D000001 ORTHO05D012572 9.4e-45 184.1 183 55.2
COL.COLO4_11173 Corchorus olitorius HOM05D000782 ORTHO05D000571 2.1e-44 183.0 175 57.7
Sabra19G0130500 Salix brachista HOM05D000782 ORTHO05D000571 3.6e-44 182.2 178 52.8
FAN21G0593 Fragaria x ananassa HOM05D000782 ORTHO05D000571 7.9e-44 181.0 184 52.7
QL01p025713 Quercus lobata HOM05D000782 ORTHO05D000571 7.9e-44 181.0 174 52.9
FAN25G1963 Fragaria x ananassa HOM05D000001 ORTHO05D012572 1.0e-43 180.6 176 55.7
FvH4_3g39960 Fragaria vesca HOM05D000782 ORTHO05D000571 2.3e-43 179.5 176 55.1
FAN16G3647 Fragaria x ananassa HOM05D000001 ORTHO05D012572 2.3e-43 179.5 176 55.1
QL04p095962 Quercus lobata HOM05D000782 ORTHO05D000571 5.1e-43 178.3 174 52.3
QL04p095983 Quercus lobata HOM05D000782 ORTHO05D000571 5.1e-43 178.3 174 52.3
RcHm_v2.0_Chr5g0071971 Rosa chinensis HOM05D000782 ORTHO05D000571 5.1e-43 178.3 183 51.4
Manes.18G126600 Manihot esculenta HOM05D000782 ORTHO05D000571 1.1e-42 177.2 178 52.8
TAR369G0987 Trochodendron aralioides HOM05D000782 ORTHO05D000571 2.0e-42 176.4 178 51.7
Sabra19G0124100 Salix brachista HOM05D000782 ORTHO05D000571 4.8e-41 171.8 203 46.3
Gohir.D03G143800 Gossypium hirsutum HOM05D000782 ORTHO05D000571 1.4e-40 170.2 175 53.7
Gohir.D08G221000 Gossypium hirsutum HOM05D000782 ORTHO05D000571 2.4e-40 169.5 173 53.8
Gorai.004G234700 Gossypium raimondii HOM05D000782 ORTHO05D000571 2.4e-40 169.5 173 53.8
Hma1.2p1_1421F.1_g282460 Hydrangea macrophylla HOM05D000782 ORTHO05D000571 5.3e-40 168.3 179 51.4
Eucgr.K01367 Eucalyptus grandis HOM05D000782 ORTHO05D000571 6.9e-40 167.9 183 53.6
Gorai.003G151100 Gossypium raimondii HOM05D000782 ORTHO05D000571 1.5e-39 166.8 175 53.1
Actinidia32599 Actinidia chinensis HOM05D000782 ORTHO05D000571 2.0e-39 166.4 180 53.3
Haze_24431 Corylus avellana HOM05D000782 ORTHO05D000571 1.9e-37 159.8 173 49.1
Oeu050028.1 Olea europaea HOM05D000782 ORTHO05D000571 4.2e-37 158.7 180 50.0
Lj2A1095G46 Lonicera japonica HOM05D000782 ORTHO05D000571 9.4e-37 157.5 177 50.8
DCAR_023953 Daucus carota HOM05D000782 ORTHO05D000571 1.2e-36 157.1 184 47.3
Glyma.14G200600 Glycine max HOM05D000782 ORTHO05D000571 1.6e-36 156.8 180 47.8
TWI79G1409 Tripterygium wilfordii HOM05D000782 ORTHO05D000571 1.6e-36 156.8 193 46.6
Migut.N00751 Erythranthe guttata HOM05D000782 ORTHO05D000571 2.1e-36 156.4 178 45.5
vmacro02905 Vaccinium macrocarpon HOM05D000782 ORTHO05D000571 2.1e-36 156.4 181 50.3
CiPaw.14G053200 Carya illinoinensis HOM05D000782 ORTHO05D000571 7.9e-36 154.5 176 49.4
Cc01_g15010 Coffea canephora HOM05D000782 ORTHO05D000571 3.0e-35 152.5 190 42.6
Phvul.008G250800 Phaseolus vulgaris HOM05D000782 ORTHO05D000571 3.0e-35 152.5 180 47.2
Rhsim13G0062600 Rhododendron simsii HOM05D000782 ORTHO05D000571 7.4e-34 147.9 177 48.6
Psat0s2794g0120 Pisum sativum HOM05D000782 ORTHO05D000571 9.7e-34 147.5 176 46.0
VMungo0647G1733 Vigna mungo HOM05D000782 ORTHO05D000571 9.7e-34 147.5 180 45.6
Lalb_Chr10g0103661 Lupinus albus HOM05D000782 ORTHO05D000571 3.7e-33 145.6 175 46.3
SalBow2G3499 Salvia bowleyana HOM05D000782 ORTHO05D000571 3.7e-33 145.6 181 43.6
Cpa.g.sc2.336 Carica papaya HOM05D000782 ORTHO05D000571 7.0e-32 141.4 177 44.6
C03p19910 Brassica napus HOM05D000782 ORTHO05D000571 9.1e-32 141.0 172 48.8
BolC3t14370H Brassica oleracea HOM05D000782 ORTHO05D000571 9.1e-32 141.0 172 48.8
CiPaw.13G067500 Carya illinoinensis HOM05D000782 ORTHO05D000571 9.1e-32 141.0 177 45.2
TPR.G25342 Trifolium pratense HOM05D000782 ORTHO05D000571 9.1e-32 141.0 180 43.9
Nn2g11061 Nelumbo nucifera HOM05D000782 ORTHO05D000571 1.2e-31 140.6 176 47.2
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 1.5e-31 140.2 161 49.7
Medtr5g074550 Medicago truncatula HOM05D000782 ORTHO05D000571 1.5e-31 140.2 181 44.2
BcaC01g06019 Brassica carinata HOM05D000782 ORTHO05D000571 2.6e-31 139.4 176 46.6
A03p16910 Brassica napus HOM05D000782 ORTHO05D000571 3.5e-31 139.0 178 46.6
BraA03t10980Z Brassica rapa HOM05D000782 ORTHO05D000571 4.5e-31 138.7 178 46.6
LjContig00141g0026997 Lotus japonicus HOM05D000782 ORTHO05D000571 7.7e-31 137.9 181 40.9
Thhalv10017277m.g Eutrema salsugineum HOM05D000782 ORTHO05D000571 1.3e-30 137.1 176 47.2
CARHR123590 Cardamine hirsuta HOM05D000782 ORTHO05D000571 1.7e-30 136.7 171 48.5
Carub.0004s1143 Capsella rubella HOM05D000782 ORTHO05D000571 2.9e-30 136.0 177 45.8
AT2G30270 Arabidopsis thaliana HOM05D000782 ORTHO05D000571 3.8e-30 135.6 173 47.4
Lsat_1_v5_gn_8_108720 Lactuca sativa HOM05D000782 ORTHO05D000571 3.8e-30 135.6 185 42.7
AL4G25120 Arabidopsis lyrata HOM05D000782 ORTHO05D000571 5.0e-30 135.2 173 47.4
CAN.G1095.28 Capsicum annuum HOM05D000782 ORTHO05D000571 8.5e-30 134.4 178 42.1
Aa31LG5G6450 Aethionema arabicum HOM05D002411 ORTHO05D002564 1.1e-29 134.0 172 47.7
Potri.019G126300 Populus trichocarpa HOM05D000782 ORTHO05D000571 1.9e-29 133.3 179 44.1
MSTRG.12694 Avicennia marina HOM05D000782 ORTHO05D000571 2.5e-29 132.9 180 39.4
Sp4g12850 Schrenkiella parvula HOM05D000782 ORTHO05D000571 3.2e-29 132.5 174 46.6
MBI15_g20019_MAGBIO Magnolia biondii HOM05D000782 ORTHO05D000571 9.4e-29 131.0 177 42.4
THA.LOC104800764 Tarenaya hassleriana HOM05D000782 ORTHO05D000571 9.4e-29 131.0 174 44.3
Sopen06g033770 Solanum pennellii HOM05D000782 ORTHO05D000571 3.6e-28 129.0 179 40.2
PGSC0003DMG400030460 Solanum tuberosum HOM05D000782 ORTHO05D000571 3.6e-28 129.0 182 40.1
Solyc06g082380.3 Solanum lycopersicum HOM05D000782 ORTHO05D000571 6.1e-28 128.3 179 40.2
Dinv12248 Davidia involucrata HOM05D000782 ORTHO05D000571 1.0e-27 127.5 138 50.0
unitig_22.g5204 Utricularia gibba HOM05D006159 ORTHO05D007624 1.4e-27 127.1 156 41.7
Actinidia23186 Actinidia chinensis HOM05D006271 ORTHO05D008237 3.0e-27 125.9 144 52.8
Ah.08g215420 Amaranthus hybridus HOM05D000782 ORTHO05D000571 6.7e-27 124.8 171 40.9
TAR623G0287 Trochodendron aralioides HOM05D000782 ORTHO05D000571 6.7e-27 124.8 138 47.8
TAR623G1242 Trochodendron aralioides HOM05D000782 ORTHO05D000571 6.7e-27 124.8 134 49.3
HanXRQChr11g0339921 Helianthus annuus HOM05D000782 ORTHO05D000571 1.1e-26 124.0 184 42.9
MD17G1185800 Malus domestica HOM05D000782 ORTHO05D000571 1.1e-26 124.0 144 49.3
Gohir.A08G203700 Gossypium hirsutum HOM05D000782 ORTHO05D000571 1.5e-26 123.6 140 49.3
PSO170G6702 Papaver somniferum HOM05D000782 ORTHO05D000571 2.0e-26 123.2 178 42.7
arahy.Tifrunner.gnm1.ann1.NRMQ9K Arachis hypogaea HOM05D000782 ORTHO05D000571 2.6e-26 122.9 181 39.8
ECA236G0449 Erigeron canadensis HOM05D000782 ORTHO05D000571 2.6e-26 122.9 131 50.4
Medtr5g074560 Medicago truncatula HOM05D000782 ORTHO05D000571 2.6e-26 122.9 176 41.5
Gohir.A03G024700 Gossypium hirsutum HOM05D000782 ORTHO05D000571 5.7e-26 121.7 138 50.0
AUR62036230 Chenopodium quinoa HOM05D006271 ORTHO05D008237 5.3e-24 115.2 176 38.6
EL10Ac7g15871 Beta vulgaris HOM05D000782 ORTHO05D000571 1.6e-23 113.6 174 37.4
CANSAT54G1735 Cannabis sativa HOM05D000782 ORTHO05D000571 1.6e-23 113.6 194 39.2
AUR62009715 Chenopodium quinoa HOM05D000782 ORTHO05D000571 1.7e-22 110.2 176 39.2
SHI19227 Sapria himalayana HOM05D000782 ORTHO05D000571 1.1e-21 107.5 102 55.9
PSO017G2384 Papaver somniferum HOM05D000782 ORTHO05D000571 7.2e-21 104.8 179 37.4
CSS0016607 Camellia sinensis var. sinensis HOM05D000782 ORTHO05D000571 2.7e-20 102.8 91 58.2
Aqoxy4G02166 Aquilegia oxysepala HOM05D000782 ORTHO05D000571 4.7e-20 102.1 158 40.5
Glyma.02G233000 Glycine max HOM05D000782 ORTHO05D000571 1.5e-18 97.1 138 41.3
SGA_v2.0_scaffold120G32965 Striga asiatica HOM05D000782 ORTHO05D000571 2.6e-18 96.3 188 32.4
Oeu050030.1 Olea europaea HOM05D000782 ORTHO05D000571 7.0e-16 88.2 65 66.2
Sc21g0004900 Simmondsia chinensis HOM05D000782 ORTHO05D000571 2.0e-15 86.7 137 35.0
Zm00001eb286650 Zea mays HOM05D000782 ORTHO05D000571 2.0e-15 86.7 169 32.0
ATR0681G158 Amborella trichopoda HOM05D000782 ORTHO05D000571 3.5e-15 85.9 190 34.7
TAR623G0969 Trochodendron aralioides HOM05D000782 ORTHO05D000571 4.5e-15 85.5 71 56.3
DCAR_028905 Daucus carota HOM05D000782 ORTHO05D000571 5.9e-15 85.1 177 33.9
DCAR_028903 Daucus carota HOM05D000782 ORTHO05D000571 1.7e-14 83.6 177 34.5
TAR623G1291 Trochodendron aralioides HOM05D000782 ORTHO05D000571 5.0e-14 82.0 177 35.0
TAR623G1064 Trochodendron aralioides HOM05D000782 ORTHO05D000571 8.5e-14 81.3 177 34.5
Lj3A943G21 Lonicera japonica HOM05D000782 ORTHO05D000571 1.1e-13 80.9 179 34.6
HPP92_001136 Vanilla planifolia HOM05D000782 ORTHO05D000571 2.5e-13 79.7 112 39.3
Cc06_g00620 Coffea canephora HOM05D000782 ORTHO05D000571 3.2e-13 79.3 177 33.9
DCAR_015455 Daucus carota HOM05D000782 ORTHO05D000571 3.2e-13 79.3 178 32.6
CANSAT35G0618 Cannabis sativa HOM05D000782 ORTHO05D000571 5.5e-13 78.6 180 32.8
MD12G1183000 Malus domestica HOM05D000782 ORTHO05D000571 7.2e-13 78.2 180 35.0
Ca_05681_v3 Cicer arietinum L. HOM05D000782 ORTHO05D000571 9.4e-13 77.8 151 37.7
Nn2g11064 Nelumbo nucifera HOM05D000782 ORTHO05D000571 2.7e-12 76.3 154 33.8
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 3.6e-12 75.9 68 50.0
Aqoxy4G02163 Aquilegia oxysepala HOM05D000782 ORTHO05D000571 4.7e-12 75.5 152 36.2
DCAR_028900 Daucus carota HOM05D000782 ORTHO05D000571 4.7e-12 75.5 177 31.1
Rhsim05G0227900 Rhododendron simsii HOM05D000782 ORTHO05D000571 4.7e-12 75.5 177 35.6
Lalb_Chr03g0043661 Lupinus albus HOM05D000782 ORTHO05D000571 8.0e-12 74.7 178 30.9
RcHm_v2.0_Chr3g0461231 Rosa chinensis HOM05D000782 ORTHO05D000571 8.0e-12 74.7 180 32.8
GSVIVG01030235001 Vitis vinifera HOM05D000782 ORTHO05D000571 1.0e-11 74.3 175 33.7
ECA247G3886 Erigeron canadensis HOM05D000782 ORTHO05D000571 1.4e-11 73.9 180 32.8
Actinidia29055 Actinidia chinensis HOM05D000782 ORTHO05D000571 2.3e-11 73.2 177 32.8
RcHm_v2.0_Chr3g0461221 Rosa chinensis HOM05D000782 ORTHO05D000571 2.3e-11 73.2 180 32.8
vmacro20341 Vaccinium macrocarpon HOM05D000782 ORTHO05D000571 3.0e-11 72.8 177 32.8
FvH4_6g10370 Fragaria vesca HOM05D000782 ORTHO05D000571 4.0e-11 72.4 180 32.2
Prupe.6G287600 Prunus persica HOM05D000782 ORTHO05D000571 4.0e-11 72.4 180 33.3
Lsat_1_v5_gn_9_38141 Lactuca sativa HOM05D000782 ORTHO05D000571 5.2e-11 72.0 180 33.9
FAN14G3537 Fragaria x ananassa HOM05D000782 ORTHO05D000571 6.8e-11 71.6 180 32.2
MD12G1183400 Malus domestica HOM05D000782 ORTHO05D000571 6.8e-11 71.6 181 33.1
Os05g0339200 Oryza sativa ssp. japonica HOM05D000782 ORTHO05D000571 6.8e-11 71.6 128 33.6
Solyc09g014820.3 Solanum lycopersicum HOM05D000782 ORTHO05D000571 6.8e-11 71.6 133 36.1
SEGI_32147 Sequoiadendron giganteum HOM05D000782 ORTHO05D000571 8.8e-11 71.2 175 29.7
Thecc.04G157000 Theobroma cacao HOM05D000782 ORTHO05D000571 1.2e-10 70.9 175 33.1
Actinidia29056 Actinidia chinensis HOM05D000782 ORTHO05D000571 1.5e-10 70.5 134 34.3
Ciclev10013687m.g Citrus clementina HOM05D000782 ORTHO05D000571 1.5e-10 70.5 178 30.9
Prupe.6G287500 Prunus persica HOM05D000782 ORTHO05D000571 1.5e-10 70.5 177 31.1
Duzib268G1814 Durio zibethinus HOM05D000782 ORTHO05D000571 2.6e-10 69.7 175 31.4
Rhsim05G0227600 Rhododendron simsii HOM05D000782 ORTHO05D000571 2.6e-10 69.7 134 35.1
MD12G1182900 Malus domestica HOM05D000782 ORTHO05D000571 3.4e-10 69.3 134 35.1
Duzib151G0149 Durio zibethinus HOM05D000782 ORTHO05D000571 4.4e-10 68.9 135 35.6
CDE06G0912 Ceratophyllum demersum HOM05D000782 ORTHO05D000571 5.7e-10 68.6 182 30.8
CDE06G2424 Ceratophyllum demersum HOM05D000782 ORTHO05D000571 7.5e-10 68.2 179 32.4
FvH4_6g10371 Fragaria vesca HOM05D000782 ORTHO05D000571 9.8e-10 67.8 177 31.6
SEGI_38654 Sequoiadendron giganteum HOM05D000782 ORTHO05D000571 3.7e-09 65.9 128 31.2
TWI77G0877 Tripterygium wilfordii HOM05D000782 ORTHO05D000571 3.7e-09 65.9 135 35.6
arahy.Tifrunner.gnm1.ann1.89W0PE Arachis hypogaea HOM05D000782 ORTHO05D000571 4.9e-09 65.5 139 31.7
Ciclev10012729m.g Citrus clementina HOM05D000782 ORTHO05D000571 1.1e-08 64.3 183 31.1
Manes.10G008300 Manihot esculenta HOM05D000782 ORTHO05D000571 1.1e-08 64.3 109 37.6
SEGI_07804 Sequoiadendron giganteum HOM05D000782 ORTHO05D000571 1.1e-08 64.3 176 30.1
GSVIVG01030237001 Vitis vinifera HOM05D000782 ORTHO05D000571 1.1e-08 64.3 134 33.6
DCAR_028901 Daucus carota HOM05D000782 ORTHO05D000571 2.4e-08 63.2 151 31.1
Actinidia32552 Actinidia chinensis HOM05D000782 ORTHO05D000571 5.4e-08 62.0 143 32.2
CAN.G48.38 Capsicum annuum HOM05D000782 ORTHO05D000571 9.1e-08 61.2 71 43.7
Nitab4.5_0003270g0030 Nicotiana tabacum HOM05D000782 ORTHO05D000571 9.1e-08 61.2 115 33.0
Aa31LG1G23390 Aethionema arabicum HOM05D000782 ORTHO05D000571 1.2e-07 60.8 110 36.4
SEGI_35763 Sequoiadendron giganteum HOM05D000782 ORTHO05D000571 1.6e-07 60.5 152 28.3
Phvul.008G219000 Phaseolus vulgaris HOM05D000782 ORTHO05D000571 2.0e-07 60.1 151 31.1
SEGI_02032 Sequoiadendron giganteum HOM05D000782 ORTHO05D000571 3.5e-07 59.3 157 29.3
SEGI_09718 Sequoiadendron giganteum HOM05D000782 ORTHO05D000571 7.7e-07 58.2 152 28.3
Gorai.012G080000 Gossypium raimondii HOM05D000782 ORTHO05D000571 8.6e-06 54.7 177 28.2


User provided reference genes

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