Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G002480 Citrullus lanatus HOM05D002874 ORTHO05D003250 2.9e-21 104.4 55 100.0
CsaV3_6G002730 Cucumis sativus L. HOM05D002874 ORTHO05D003250 7.9e-19 96.3 55 90.9
Sed0010548 Sechium edule HOM05D002874 ORTHO05D003250 3.9e-18 94.0 55 90.9
arahy.Tifrunner.gnm1.ann1.3TL6MN Arachis hypogaea HOM05D002874 ORTHO05D003250 1.3e-13 79.0 52 71.2
arahy.Tifrunner.gnm1.ann1.ULYQ5U Arachis hypogaea HOM05D002874 ORTHO05D003250 1.3e-13 79.0 52 71.2
Potri.013G105400 Populus trichocarpa HOM05D002874 ORTHO05D003250 1.7e-13 78.6 52 71.2
Ciclev10002598m.g Citrus clementina HOM05D002874 ORTHO05D003250 3.8e-13 77.4 52 69.2
CiPaw.08G003100 Carya illinoinensis HOM05D002874 ORTHO05D003250 6.5e-13 76.6 52 69.2
Ah.05g178590 Amaranthus hybridus HOM05D002874 ORTHO05D003250 8.4e-13 76.3 52 63.5
AT1G22510 Arabidopsis thaliana HOM05D002874 ORTHO05D003250 8.4e-13 76.3 52 65.4
Duzib211G0598 Durio zibethinus HOM05D002874 ORTHO05D003250 8.4e-13 76.3 52 69.2
Thecc.08G192600 Theobroma cacao HOM05D002874 ORTHO05D003250 8.4e-13 76.3 52 69.2
TWI59G0939 Tripterygium wilfordii HOM05D002874 ORTHO05D003250 8.4e-13 76.3 52 67.3
Lalb_Chr15g0080121 Lupinus albus HOM05D002874 ORTHO05D003250 1.1e-12 75.9 52 65.4
Sabra13G0091100 Salix brachista HOM05D002874 ORTHO05D003250 1.1e-12 75.9 52 63.5
COL.COLO4_24649 Corchorus olitorius HOM05D002874 ORTHO05D003250 1.4e-12 75.5 52 69.2
Haze_21316 Corylus avellana HOM05D002874 ORTHO05D003250 1.4e-12 75.5 52 71.2
Duzib116G0473 Durio zibethinus HOM05D002874 ORTHO05D003250 1.4e-12 75.5 52 67.3
Migut.C01326 Erythranthe guttata HOM05D002874 ORTHO05D003250 1.4e-12 75.5 52 63.5
SGA_v2.0_scaffold24G10609 Striga asiatica HOM05D002874 ORTHO05D003250 1.4e-12 75.5 52 63.5
THA.LOC104809729 Tarenaya hassleriana HOM05D002874 ORTHO05D003250 1.4e-12 75.5 52 61.5
VMungo1080G0651 Vigna mungo HOM05D002874 ORTHO05D003250 1.4e-12 75.5 53 67.9
BcaC08g45227 Brassica carinata HOM05D002874 ORTHO05D003250 1.9e-12 75.1 51 66.7
BcaC08g46664 Brassica carinata HOM05D002874 ORTHO05D003250 1.9e-12 75.1 51 72.5
C06p46350 Brassica napus HOM05D002874 ORTHO05D003250 1.9e-12 75.1 51 72.5
BolC6t39680H Brassica oleracea HOM05D002874 ORTHO05D003250 1.9e-12 75.1 51 72.5
Cc10_g09520 Coffea canephora HOM05D002874 ORTHO05D003250 1.9e-12 75.1 51 66.7
TPR.G25522 Trifolium pratense HOM05D002874 ORTHO05D003250 1.9e-12 75.1 52 69.2
Atru.chr13.2374 Acer truncatum HOM05D002874 ORTHO05D003250 2.5e-12 74.7 52 67.3
AL1G36050 Arabidopsis lyrata HOM05D002874 ORTHO05D003250 2.5e-12 74.7 52 65.4
BcaB03g14199 Brassica carinata HOM05D002874 ORTHO05D003250 2.5e-12 74.7 52 65.4
Carub.0001s2204 Capsella rubella HOM05D002874 ORTHO05D003250 2.5e-12 74.7 52 65.4
CARHR022860 Cardamine hirsuta HOM05D002874 ORTHO05D003250 3.2e-12 74.3 52 63.5
Cfa012972 Carpinus fangiana HOM05D002874 ORTHO05D003250 3.2e-12 74.3 52 69.2
Manes.18G106200 Manihot esculenta HOM05D002874 ORTHO05D003250 3.2e-12 74.3 52 67.3
Sabra19G0089700 Salix brachista HOM05D002874 ORTHO05D003250 3.2e-12 74.3 52 61.5
Oeu059197.1 Olea europaea HOM05D002874 ORTHO05D003250 4.2e-12 73.9 52 65.4
Psat1g008160 Pisum sativum HOM05D002874 ORTHO05D003250 4.2e-12 73.9 52 67.3
Potri.019G078800 Populus trichocarpa HOM05D002874 ORTHO05D003250 4.2e-12 73.9 52 63.5
THA.LOC104800136 Tarenaya hassleriana HOM05D002874 ORTHO05D003250 4.2e-12 73.9 52 61.5
A07p38290 Brassica napus HOM05D002874 ORTHO05D003250 5.5e-12 73.6 51 70.6
BraA07t31393Z Brassica rapa HOM05D002874 ORTHO05D003250 5.5e-12 73.6 51 70.6
CARHR065030 Cardamine hirsuta HOM05D002874 ORTHO05D003250 5.5e-12 73.6 51 68.6
Thhalv10019196m.g Eutrema salsugineum HOM05D002874 ORTHO05D003250 5.5e-12 73.6 51 68.6
Sp5g27260 Schrenkiella parvula HOM05D002874 ORTHO05D003250 5.5e-12 73.6 51 68.6
AT1G72175 Arabidopsis thaliana HOM05D002874 ORTHO05D003250 7.1e-12 73.2 51 68.6
BcaB05g24721 Brassica carinata HOM05D002874 ORTHO05D003250 7.1e-12 73.2 51 66.7
BcaC06g34971 Brassica carinata HOM05D002874 ORTHO05D003250 7.1e-12 73.2 52 65.4
A07p14340 Brassica napus HOM05D002874 ORTHO05D003250 7.1e-12 73.2 52 65.4
C07p21110 Brassica napus HOM05D002874 ORTHO05D003250 7.1e-12 73.2 52 65.4
BolC7t42639H Brassica oleracea HOM05D002874 ORTHO05D003250 7.1e-12 73.2 52 65.4
Haze_21322 Corylus avellana HOM05D002874 ORTHO05D003250 7.1e-12 73.2 52 69.2
Sc01g0002000 Simmondsia chinensis HOM05D002874 ORTHO05D003250 7.1e-12 73.2 52 67.3
Haze_21319 Corylus avellana HOM05D002874 ORTHO05D003250 1.2e-11 72.4 52 67.3
Thhalv10008870m.g Eutrema salsugineum HOM05D002874 ORTHO05D003250 1.2e-11 72.4 52 63.5
PGR083G2530 Punica granatum HOM05D002874 ORTHO05D003250 1.2e-11 72.4 52 61.5
Aa31LG4G8390 Aethionema arabicum HOM05D002874 ORTHO05D003250 1.6e-11 72.0 51 66.7
Cpa.g.sc66.5 Carica papaya HOM05D002874 ORTHO05D003250 1.6e-11 72.0 52 65.4
Hund16773 Selenicereus undatus HOM05D002874 ORTHO05D003250 1.6e-11 72.0 52 65.4
HPP92_003141 Vanilla planifolia HOM05D002874 ORTHO05D003250 1.6e-11 72.0 52 67.3
CiPaw.07G235400 Carya illinoinensis HOM05D002874 ORTHO05D003250 2.1e-11 71.6 52 69.2
DCAR_017446 Daucus carota HOM05D002874 ORTHO05D003250 2.1e-11 71.6 52 65.4
Medtr3g005800 Medicago truncatula HOM05D002874 ORTHO05D003250 2.1e-11 71.6 52 65.4
vmacro00978 Vaccinium macrocarpon HOM05D002874 ORTHO05D003250 2.7e-11 71.2 52 65.4
GSVIVG01026089001 Vitis vinifera HOM05D002874 ORTHO05D003250 3.5e-11 70.9 52 63.5
Gohir.D05G252200 Gossypium hirsutum HOM05D002874 ORTHO05D003250 4.6e-11 70.5 52 65.4
Gorai.009G265000 Gossypium raimondii HOM05D002874 ORTHO05D003250 4.6e-11 70.5 52 65.4
CSS0018795 Camellia sinensis var. sinensis HOM05D002874 ORTHO05D003250 6.1e-11 70.1 52 61.5
CSS0020391 Camellia sinensis var. sinensis HOM05D002874 ORTHO05D003250 6.1e-11 70.1 52 61.5
AUR62004599 Chenopodium quinoa HOM05D002874 ORTHO05D003250 6.1e-11 70.1 49 63.3
Gohir.A05G251600 Gossypium hirsutum HOM05D002874 ORTHO05D003250 6.1e-11 70.1 52 65.4
AL2G31840 Arabidopsis lyrata HOM05D002874 ORTHO05D003250 7.9e-11 69.7 51 64.7
MSTRG.25476 Avicennia marina HOM05D002874 ORTHO05D003250 7.9e-11 69.7 50 62.0
Nitab4.5_0001463g0040 Nicotiana tabacum HOM05D002874 ORTHO05D003250 7.9e-11 69.7 52 59.6
Hma1.2p1_0004F.1_g004110 Hydrangea macrophylla HOM05D002874 ORTHO05D003250 1.0e-10 69.3 52 63.5
Lj3g0022874 Lotus japonicus HOM05D002874 ORTHO05D003250 1.0e-10 69.3 52 61.5
Nitab4.5_0005616g0060 Nicotiana tabacum HOM05D002874 ORTHO05D003250 1.0e-10 69.3 52 59.6
Aqoxy6G00106 Aquilegia oxysepala HOM05D002874 ORTHO05D003250 1.3e-10 68.9 55 65.5
Eucgr.F04113 Eucalyptus grandis HOM05D002874 ORTHO05D003250 1.8e-10 68.6 52 57.7
Rhsim12G0006100 Rhododendron simsii HOM05D002874 ORTHO05D003250 1.8e-10 68.6 52 61.5
MBI17_g21478_MAGBIO Magnolia biondii HOM05D002874 ORTHO05D003250 2.3e-10 68.2 55 58.2
RcHm_v2.0_Chr7g0227111 Rosa chinensis HOM05D002874 ORTHO05D003250 3.0e-10 67.8 52 59.6
Solyc11g027810.3 Solanum lycopersicum HOM05D002874 ORTHO05D003250 3.0e-10 67.8 52 59.6
Carub.0002s1898 Capsella rubella HOM05D002874 ORTHO05D003250 3.9e-10 67.4 51 66.7
CAN.G2.32 Capsicum annuum HOM05D002874 ORTHO05D003250 3.9e-10 67.4 50 60.0
MSTRG.1570 Avicennia marina HOM05D002874 ORTHO05D003250 5.1e-10 67.0 49 61.2
CANSAT56G0379 Cannabis sativa HOM05D002874 ORTHO05D003250 5.1e-10 67.0 52 61.5
CANSAT56G0446 Cannabis sativa HOM05D002874 ORTHO05D003250 5.1e-10 67.0 52 61.5
FAN18G1812 Fragaria x ananassa HOM05D002874 ORTHO05D003250 5.1e-10 67.0 53 56.6
AUR62023545 Chenopodium quinoa HOM05D002874 ORTHO05D003250 6.7e-10 66.6 49 59.2
Glyma.04G255000 Glycine max HOM05D002874 ORTHO05D003250 6.7e-10 66.6 52 63.5
MD08G1217700 Malus domestica HOM05D002874 ORTHO05D003250 6.7e-10 66.6 52 59.6
MD15G1405300 Malus domestica HOM05D002874 ORTHO05D003250 6.7e-10 66.6 52 59.6
Nn1g08358 Nelumbo nucifera HOM05D002874 ORTHO05D003250 6.7e-10 66.6 52 63.5
PGSC0003DMG400026730 Solanum tuberosum HOM05D002874 ORTHO05D003250 8.7e-10 66.2 50 58.0
unitig_37.g13102 Utricularia gibba HOM05D002874 ORTHO05D003250 8.7e-10 66.2 52 48.1
PSO170G2830 Papaver somniferum HOM05D002874 ORTHO05D003250 1.1e-09 65.9 55 60.0
TAR628G0883 Trochodendron aralioides HOM05D002874 ORTHO05D003250 1.1e-09 65.9 52 63.5
Os03g0839000 Oryza sativa ssp. japonica HOM05D002874 ORTHO05D003250 1.5e-09 65.5 52 59.6
FAN07G2383 Fragaria x ananassa HOM05D002874 ORTHO05D003250 1.9e-09 65.1 51 58.8
FAN08G3034 Fragaria x ananassa HOM05D002874 ORTHO05D003250 1.9e-09 65.1 51 58.8
PSO782G4577 Papaver somniferum HOM05D002874 ORTHO05D003250 3.3e-09 64.3 52 61.5
FvH4_5g31590 Fragaria vesca HOM05D002874 ORTHO05D003250 5.7e-09 63.5 51 56.9
ATR0709G075 Amborella trichopoda HOM05D002874 ORTHO05D003250 9.7e-09 62.8 52 57.7
Prupe.1G555800 Prunus persica HOM05D002874 ORTHO05D003250 1.1e-07 59.3 52 51.9
HanXRQChr02g0036891 Helianthus annuus HOM05D002874 ORTHO05D003250 1.4e-07 58.9 52 48.1
ECA247G4052 Erigeron canadensis HOM05D002874 ORTHO05D003250 2.4e-07 58.2 52 50.0
HanXRQChr04g0101991 Helianthus annuus HOM05D002874 ORTHO05D003250 3.1e-07 57.8 52 50.0
BcaB02g07327 Brassica carinata HOM05D002874 ORTHO05D003250 5.3e-07 57.0 51 51.0
BcaB03g14961 Brassica carinata HOM05D002874 ORTHO05D003250 5.3e-07 57.0 51 62.7
SEGI_08350 Sequoiadendron giganteum HOM05D002874 ORTHO05D003250 1.2e-06 55.8 50 50.0
Pp3c4_27320 Physcomitrium patens HOM05D002874 ORTHO05D003250 1.5e-06 55.5 52 48.1
Lsat_1_v5_gn_1_25761 Lactuca sativa HOM05D002874 ORTHO05D003250 2.6e-06 54.7 47 51.1
Mapoly0062s0090 Marchantia polymorpha HOM05D002874 ORTHO05D003250 3.4e-06 54.3 46 52.2


User provided reference genes

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