Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G002400 Citrullus lanatus HOM05D006203 ORTHO05D007675 9.2e-248 859.8 430 100.0
CsaV3_6G002690 Cucumis sativus L. HOM05D006203 ORTHO05D007675 4.0e-235 817.8 430 94.4
MELO3C025014.2 Cucumis melo HOM05D006203 ORTHO05D007675 1.7e-233 812.4 430 94.2
Sed0022684 Sechium edule HOM05D006203 ORTHO05D007675 1.4e-219 766.1 430 87.4
Potri.005G193300 Populus trichocarpa HOM05D006203 ORTHO05D007675 1.2e-202 709.9 431 80.5
QL02p038832 Quercus lobata HOM05D006203 ORTHO05D007675 3.8e-201 704.9 429 80.0
Sabra05G0147700 Salix brachista HOM05D006203 ORTHO05D007675 1.9e-200 702.6 431 79.8
Potri.002G066900 Populus trichocarpa HOM05D006203 ORTHO05D007675 4.2e-200 701.4 433 79.2
TWI60G1081 Tripterygium wilfordii HOM05D006203 ORTHO05D007675 7.9e-199 697.2 431 79.1
Thecc.08G154300 Theobroma cacao HOM05D006203 ORTHO05D007675 3.0e-198 695.3 430 78.1
Eucgr.F04230 Eucalyptus grandis HOM05D006203 ORTHO05D007675 5.1e-198 694.5 431 78.9
CiPaw.16G011200 Carya illinoinensis HOM05D006203 ORTHO05D007675 3.3e-197 691.8 430 80.0
Duzib116G0092 Durio zibethinus HOM05D006203 ORTHO05D007675 7.4e-197 690.6 430 77.4
Hma1.2p1_0105F.1_g050570 Hydrangea macrophylla HOM05D006203 ORTHO05D007675 1.3e-196 689.9 434 77.4
CANSAT25G3154 Cannabis sativa HOM05D006203 ORTHO05D007675 8.2e-196 687.2 431 77.3
Cpa.g.sc21.210 Carica papaya HOM05D006203 ORTHO05D007675 1.1e-195 686.8 427 78.5
Ciclev10001246m.g Citrus clementina HOM05D006203 ORTHO05D007675 2.2e-193 679.1 431 76.6
Cfa018314 Carpinus fangiana HOM05D006203 ORTHO05D007675 4.2e-192 674.9 430 77.0
GSVIVG01034547001 Vitis vinifera HOM05D006203 ORTHO05D007675 6.1e-191 671.0 425 76.9
COL.COLO4_29853 Corchorus olitorius HOM05D006203 ORTHO05D007675 7.9e-191 670.6 461 71.6
Gorai.002G055700 Gossypium raimondii HOM05D006203 ORTHO05D007675 1.8e-190 669.5 430 75.8
Manes.02G180400 Manihot esculenta HOM05D006203 ORTHO05D007675 3.9e-190 668.3 426 77.2
Gohir.D03G060606 Gossypium hirsutum HOM05D006203 ORTHO05D007675 6.7e-190 667.5 430 75.6
CSS0037443 Camellia sinensis var. sinensis HOM05D006203 ORTHO05D007675 2.5e-189 665.6 422 76.5
Gohir.A02G112707 Gossypium hirsutum HOM05D006203 ORTHO05D007675 7.4e-189 664.1 430 75.1
CSS0039383 Camellia sinensis var. sinensis HOM05D006203 ORTHO05D007675 9.7e-189 663.7 422 76.5
Actinidia29535 Actinidia chinensis HOM05D006203 ORTHO05D007675 2.2e-188 662.5 433 74.4
Glyma.20G167800 Glycine max HOM05D006203 ORTHO05D007675 4.8e-188 661.4 433 76.9
Lj5g0013006 Lotus japonicus HOM05D006203 ORTHO05D007675 1.1e-187 660.2 432 76.6
TAR628G0500 Trochodendron aralioides HOM05D006203 ORTHO05D007675 3.1e-187 658.7 429 75.3
Atru.chr13.2086 Acer truncatum HOM05D006203 ORTHO05D007675 6.9e-187 657.5 431 74.7
Prupe.8G033400 Prunus persica HOM05D006203 ORTHO05D007675 1.5e-186 656.4 430 76.5
VMungo0720G1833 Vigna mungo HOM05D006203 ORTHO05D007675 2.6e-186 655.6 430 76.0
MD10G1028400 Malus domestica HOM05D006203 ORTHO05D007675 7.7e-186 654.1 430 74.7
Lj4C698G9 Lonicera japonica HOM05D006203 ORTHO05D007675 5.5e-184 647.9 433 73.2
Ca_10680_v3 Cicer arietinum L. HOM05D006203 ORTHO05D007675 9.4e-184 647.1 430 76.5
Rhsim04G0148800 Rhododendron simsii HOM05D006203 ORTHO05D007675 3.6e-183 645.2 440 73.9
EL10Ac1g01566 Beta vulgaris HOM05D006203 ORTHO05D007675 4.7e-183 644.8 430 72.3
Glyma.10G224051 Glycine max HOM05D006203 ORTHO05D007675 6.1e-183 644.4 417 77.0
PGR044G2231 Punica granatum HOM05D006203 ORTHO05D007675 1.0e-182 643.7 430 73.7
PGR100G0007 Punica granatum HOM05D006203 ORTHO05D007675 1.0e-182 643.7 430 73.7
MD05G1027600 Malus domestica HOM05D006203 ORTHO05D007675 1.4e-182 643.3 430 73.7
AUR62026688 Chenopodium quinoa HOM05D006203 ORTHO05D007675 1.8e-182 642.9 433 71.1
MBI09_g13282_MAGBIO Magnolia biondii HOM05D006203 ORTHO05D007675 5.1e-182 641.3 421 74.6
Medtr1g098650 Medicago truncatula HOM05D006203 ORTHO05D007675 5.1e-182 641.3 430 74.7
Phvul.007G080700 Phaseolus vulgaris HOM05D006203 ORTHO05D007675 5.1e-182 641.3 432 74.3
TPR.G17026 Trifolium pratense HOM05D006203 ORTHO05D007675 8.8e-182 640.6 430 74.2
AUR62040604 Chenopodium quinoa HOM05D006203 ORTHO05D007675 2.0e-181 639.4 433 70.4
Psat1g027320 Pisum sativum HOM05D006203 ORTHO05D007675 4.8e-180 634.8 430 73.7
RcHm_v2.0_Chr6g0275101 Rosa chinensis HOM05D006203 ORTHO05D007675 8.2e-180 634.0 429 71.8
Nitab4.5_0002497g0040 Nicotiana tabacum HOM05D006203 ORTHO05D007675 4.1e-179 631.7 423 73.0
SGA_v2.0_scaffold24G10302 Striga asiatica HOM05D006203 ORTHO05D007675 4.5e-178 628.2 422 73.2
CDE06G0803 Ceratophyllum demersum HOM05D006203 ORTHO05D007675 2.2e-177 625.9 429 69.5
Thhalv10004157m.g Eutrema salsugineum HOM05D006203 ORTHO05D007675 3.8e-177 625.2 422 72.7
Sopen04g027530 Solanum pennellii HOM05D006203 ORTHO05D007675 3.8e-177 625.2 423 72.3
PSO017G3146 Papaver somniferum HOM05D006203 ORTHO05D007675 8.5e-177 624.0 433 70.4
Oeu002058.2 Olea europaea HOM05D006203 ORTHO05D007675 1.4e-176 623.2 451 70.3
PSO063G4112 Papaver somniferum HOM05D006203 ORTHO05D007675 1.4e-176 623.2 433 70.2
Solyc04g071550.2 Solanum lycopersicum HOM05D006203 ORTHO05D007675 2.5e-176 622.5 423 71.9
THA.LOC104803037 Tarenaya hassleriana HOM05D006203 ORTHO05D007675 2.5e-176 622.5 422 71.1
PGSC0003DMG402024096 Solanum tuberosum HOM05D006203 ORTHO05D007675 5.5e-176 621.3 423 71.6
CAN.G1215.8 Capsicum annuum HOM05D006203 ORTHO05D007675 3.6e-175 618.6 423 71.6
Lalb_Chr21g0305501 Lupinus albus HOM05D006203 ORTHO05D007675 4.7e-175 618.2 430 71.4
Nitab4.5_0001187g0150 Nicotiana tabacum HOM05D006203 ORTHO05D007675 2.3e-174 615.9 446 68.8
Hund17446 Selenicereus undatus HOM05D006203 ORTHO05D007675 2.3e-174 615.9 469 64.8
SalBow7G3786 Salvia bowleyana HOM05D006203 ORTHO05D007675 3.9e-174 615.1 422 71.1
DCAR_014434 Daucus carota HOM05D006203 ORTHO05D007675 1.1e-173 613.6 428 68.9
DCAR_014436 Daucus carota HOM05D006203 ORTHO05D007675 1.1e-173 613.6 428 68.9
SalBow7G2343 Salvia bowleyana HOM05D006203 ORTHO05D007675 1.1e-173 613.6 422 71.1
BcaB07g33983 Brassica carinata HOM05D006203 ORTHO05D007675 2.6e-173 612.5 422 71.8
AL1G51640 Arabidopsis lyrata HOM05D006203 ORTHO05D007675 3.3e-173 612.1 423 71.2
arahy.Tifrunner.gnm1.ann1.1SB772 Arachis hypogaea HOM05D006203 ORTHO05D007675 4.4e-173 611.7 435 69.9
BcaC03g14869 Brassica carinata HOM05D006203 ORTHO05D007675 7.4e-173 610.9 422 71.8
BolC2t08473H Brassica oleracea HOM05D006203 ORTHO05D007675 7.4e-173 610.9 422 71.8
Aa31LG6G9900 Aethionema arabicum HOM05D006203 ORTHO05D007675 9.7e-173 610.5 421 71.3
C02p23400 Brassica napus HOM05D006203 ORTHO05D007675 9.7e-173 610.5 422 71.8
Sp1g32440 Schrenkiella parvula HOM05D006203 ORTHO05D007675 1.3e-172 610.1 422 71.6
Carub.0001s3458 Capsella rubella HOM05D006203 ORTHO05D007675 1.7e-172 609.8 423 71.2
arahy.Tifrunner.gnm1.ann1.YI7QGP Arachis hypogaea HOM05D006203 ORTHO05D007675 2.8e-172 609.0 427 70.3
A02p14450 Brassica napus HOM05D006203 ORTHO05D007675 6.3e-172 607.8 422 71.8
AT1G43580 Arabidopsis thaliana HOM05D006203 ORTHO05D007675 8.2e-172 607.4 423 70.9
FvH4_2g13470 Fragaria vesca HOM05D006203 ORTHO05D007675 8.2e-172 607.4 422 71.8
Zm00001eb062160 Zea mays HOM05D006203 ORTHO05D007675 9.1e-171 604.0 423 67.8
vmacro12408 Vaccinium macrocarpon HOM05D006203 ORTHO05D007675 1.2e-170 603.6 532 61.1
CARHR035390 Cardamine hirsuta HOM05D006203 ORTHO05D007675 2.0e-170 602.8 423 68.8
FAN24G2615 Fragaria x ananassa HOM05D006203 ORTHO05D007675 3.5e-170 602.1 422 71.1
FAN27G1038 Fragaria x ananassa HOM05D006203 ORTHO05D007675 4.5e-170 601.7 422 71.3
FAN15G3573 Fragaria x ananassa HOM05D006203 ORTHO05D007675 1.3e-169 600.1 422 71.3
Ah.05g168000 Amaranthus hybridus HOM05D006203 ORTHO05D007675 6.5e-169 597.8 422 70.4
Os04g0423700 Oryza sativa ssp. japonica HOM05D006203 ORTHO05D007675 9.4e-168 594.0 422 67.3
Migut.C00987 Erythranthe guttata HOM05D006203 ORTHO05D007675 1.2e-167 593.6 422 69.0
Oeu051272.1 Olea europaea HOM05D006203 ORTHO05D007675 9.7e-165 583.9 419 69.9
Lsat_1_v5_gn_9_41100 Lactuca sativa HOM05D006203 ORTHO05D007675 2.8e-164 582.4 420 66.2
HanXRQChr11g0320311 Helianthus annuus HOM05D006203 ORTHO05D007675 8.3e-164 580.9 423 66.2
ATR0820G052 Amborella trichopoda HOM05D006203 ORTHO05D007675 2.0e-162 576.2 423 66.4
Sed0004557 Sechium edule HOM05D006203 ORTHO05D007675 1.1e-160 570.5 434 70.3
ECA232G0861 Erigeron canadensis HOM05D006203 ORTHO05D007675 4.2e-160 568.5 422 64.7
Peaxi162Scf00599g00123 Petunia axillaris HOM05D006203 ORTHO05D007675 2.1e-159 566.2 423 67.1
Aqoxy5G02059 Aquilegia oxysepala HOM05D006203 ORTHO05D007675 4.4e-157 558.5 421 66.5
Zm00001eb243320 Zea mays HOM05D006203 ORTHO05D007675 7.0e-155 551.2 429 61.3
Os02g0543100 Oryza sativa ssp. japonica HOM05D006203 ORTHO05D007675 1.0e-153 547.4 418 65.3
SEGI_28248 Sequoiadendron giganteum HOM05D006203 ORTHO05D007675 1.9e-152 543.1 426 63.4
Haze_17763 Corylus avellana HOM05D006203 ORTHO05D007675 7.0e-147 524.6 337 76.3
AagrBONN_evm.TU.Sc2ySwM_344.5191 Anthoceros agrestis HOM05D006203 ORTHO05D007675 9.5e-144 514.2 424 58.5
Cc10_g14900 Coffea canephora HOM05D006203 ORTHO05D007675 1.0e-142 510.8 358 68.7
SMO165G0112 Selaginella moellendorffii HOM05D006203 ORTHO05D007675 1.3e-140 503.8 430 57.7
HPP92_014433 Vanilla planifolia HOM05D006203 ORTHO05D007675 6.4e-140 501.5 435 59.8
Pp3c10_9040 Physcomitrium patens HOM05D006203 ORTHO05D007675 2.0e-133 479.9 431 55.0
unitig_82.g27121 Utricularia gibba HOM05D006203 ORTHO05D007675 2.0e-133 479.9 433 59.6
Mapoly0036s0040 Marchantia polymorpha HOM05D006203 ORTHO05D007675 3.2e-131 472.6 426 53.8
Sc02g0003970 Simmondsia chinensis HOM05D006203 ORTHO05D007675 1.6e-127 460.3 298 74.5
SHI09072 Sapria himalayana HOM05D006203 ORTHO05D007675 2.8e-127 459.5 359 65.2
Dinv41071 Davidia involucrata HOM05D006203 ORTHO05D007675 8.1e-127 458.0 273 80.6
Pp3c1_26540 Physcomitrium patens HOM05D006203 ORTHO05D007675 7.8e-122 441.4 432 48.8
Dinv41073 Davidia involucrata HOM05D006203 ORTHO05D007675 3.4e-117 426.0 267 77.5
BcaC08g42813 Brassica carinata HOM05D006203 ORTHO05D007675 1.1e-115 421.0 422 54.5
Nn5g28766 Nelumbo nucifera HOM05D006203 ORTHO05D007675 3.5e-90 336.3 197 82.2
CBR_g4804 Chara braunii HOM05D006203 ORTHO05D007675 1.0e-81 308.1 417 43.2
Zm00001eb440740 Zea mays HOM05D006203 ORTHO05D007675 7.7e-77 292.0 236 57.6
C06p00250 Brassica napus HOM05D006203 ORTHO05D007675 6.9e-70 268.9 250 56.0
MSTRG.1091 Avicennia marina HOM05D006203 ORTHO05D007675 2.7e-66 256.9 186 68.3
Dinv41070 Davidia involucrata HOM05D006203 ORTHO05D007675 3.0e-49 200.3 140 73.6
SHI09073 Sapria himalayana HOM05D006203 ORTHO05D007675 1.3e-31 141.7 91 70.3
PGSC0003DMG401024096 Solanum tuberosum HOM05D006203 ORTHO05D007675 1.7e-31 141.4 89 70.8
BraA02t06509Z Brassica rapa HOM05D006203 ORTHO05D007675 7.8e-29 132.5 88 71.6
Peaxi162Scf00599g00124 Petunia axillaris HOM05D006203 ORTHO05D007675 1.8e-25 121.3 95 62.1
Cre01.g033050 Chlamydomonas reinhardtii HOM05D006203 ORTHO05D007675 2.7e-13 80.9 328 28.7
PSO063G4868 Papaver somniferum HOM05D006203 ORTHO05D007675 4.7e-10 70.1 92 43.5
CSS0028086 Camellia sinensis var. sinensis HOM05D001336 ORTHO05D001211 1.2e-08 65.5 41 70.7


User provided reference genes

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