Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G000110 Citrullus lanatus HOM05D004447 ORTHO05D005973 7.0e-26 119.8 58 100.0
Sed0019583 Sechium edule HOM05D004447 ORTHO05D005973 1.0e-24 115.9 57 96.5
CsaV3_3G030760 Cucumis sativus L. HOM05D004447 ORTHO05D005973 1.9e-23 111.7 57 93.0
MELO3C007066.2 Cucumis melo HOM05D004447 ORTHO05D005973 7.3e-23 109.8 57 91.2
Cfa009762 Carpinus fangiana HOM05D004447 ORTHO05D005973 2.8e-22 107.8 57 91.2
Haze_23126 Corylus avellana HOM05D004447 ORTHO05D005973 2.8e-22 107.8 57 91.2
Lalb_Chr24g0397081 Lupinus albus HOM05D004447 ORTHO05D005973 8.0e-22 106.3 57 89.5
Cpa.g.sc84.65 Carica papaya HOM05D004447 ORTHO05D005973 1.8e-21 105.1 57 86.0
Dinv22185 Davidia involucrata HOM05D004447 ORTHO05D005973 4.0e-21 104.0 57 87.7
Duzib170G0888 Durio zibethinus HOM05D004447 ORTHO05D005973 5.2e-21 103.6 57 87.7
Psat7g024280 Pisum sativum HOM05D004447 ORTHO05D005973 6.8e-21 103.2 57 86.0
Rhsim01G0191400 Rhododendron simsii HOM05D004447 ORTHO05D005973 6.8e-21 103.2 57 86.0
TWI32G0348 Tripterygium wilfordii HOM05D004447 ORTHO05D005973 6.8e-21 103.2 57 80.7
vmacro17434 Vaccinium macrocarpon HOM05D004447 ORTHO05D005973 8.9e-21 102.8 57 86.0
Actinidia06336 Actinidia chinensis HOM05D004447 ORTHO05D005973 1.2e-20 102.4 57 87.7
Thecc.09G232100 Theobroma cacao HOM05D004447 ORTHO05D005973 1.2e-20 102.4 57 84.2
Lj3g0019316 Lotus japonicus HOM05D004447 ORTHO05D005973 1.5e-20 102.1 57 86.0
CiPaw.13G161800 Carya illinoinensis HOM05D004447 ORTHO05D005973 2.0e-20 101.7 57 86.0
Gohir.A08G013660 Gossypium hirsutum HOM05D004447 ORTHO05D005973 2.0e-20 101.7 57 86.0
Gohir.D08G024200 Gossypium hirsutum HOM05D004447 ORTHO05D005973 2.0e-20 101.7 57 86.0
Gorai.004G019600 Gossypium raimondii HOM05D004447 ORTHO05D005973 2.0e-20 101.7 57 86.0
CSS0013975 Camellia sinensis var. sinensis HOM05D004447 ORTHO05D005973 3.4e-20 100.9 57 84.2
COL.COLO4_24889 Corchorus olitorius HOM05D004447 ORTHO05D005973 3.4e-20 100.9 57 84.2
Ca_17467_v3 Cicer arietinum L. HOM05D004447 ORTHO05D005973 4.4e-20 100.5 57 82.5
QL01p004967 Quercus lobata HOM05D004447 ORTHO05D005973 4.4e-20 100.5 57 86.0
TAR636G0773 Trochodendron aralioides HOM05D004447 ORTHO05D005973 4.4e-20 100.5 57 82.5
arahy.Tifrunner.gnm1.ann1.M4FG4U Arachis hypogaea HOM05D004447 ORTHO05D005973 5.8e-20 100.1 57 84.2
CANSAT54G1530 Cannabis sativa HOM05D004447 ORTHO05D005973 5.8e-20 100.1 57 84.2
Cc02_g33870 Coffea canephora HOM05D004447 ORTHO05D005973 5.8e-20 100.1 57 82.5
TPR.G3376 Trifolium pratense HOM05D004447 ORTHO05D005973 5.8e-20 100.1 57 82.5
SGA_v2.0_scaffold247G44874 Striga asiatica HOM05D004447 ORTHO05D005973 7.5e-20 99.8 57 82.5
Ciclev10014192m.g Citrus clementina HOM05D004447 ORTHO05D005973 1.3e-19 99.0 57 84.2
FAN01G0266 Fragaria x ananassa HOM05D004447 ORTHO05D005973 1.3e-19 99.0 57 82.5
FvH4_7g17041 Fragaria vesca HOM05D004447 ORTHO05D005973 1.7e-19 98.6 57 82.5
FAN06G1152 Fragaria x ananassa HOM05D004447 ORTHO05D005973 1.7e-19 98.6 57 82.5
MD03G1176600 Malus domestica HOM05D004447 ORTHO05D005973 1.7e-19 98.6 57 80.7
VMungo1080G0814 Vigna mungo HOM05D004447 ORTHO05D005973 1.7e-19 98.6 57 82.5
Phvul.L009243 Phaseolus vulgaris HOM05D004447 ORTHO05D005973 2.2e-19 98.2 57 82.5
arahy.Tifrunner.gnm1.ann1.1VP9U3 Arachis hypogaea HOM05D004447 ORTHO05D005973 2.9e-19 97.8 57 82.5
Lj2C632T3 Lonicera japonica HOM05D004447 ORTHO05D005973 3.7e-19 97.4 57 80.7
Manes.14G002000 Manihot esculenta HOM05D004447 ORTHO05D005973 3.7e-19 97.4 57 78.9
Oeu043298.1 Olea europaea HOM05D004447 ORTHO05D005973 3.7e-19 97.4 57 82.5
RcHm_v2.0_Chr3g0490671 Rosa chinensis HOM05D004447 ORTHO05D005973 3.7e-19 97.4 57 80.7
Aqoxy5G02409 Aquilegia oxysepala HOM05D004447 ORTHO05D005973 4.9e-19 97.1 57 78.9
Medtr8g099640 Medicago truncatula HOM05D004447 ORTHO05D005973 4.9e-19 97.1 57 80.7
FvH4_1g30421 Fragaria vesca HOM05D004447 ORTHO05D005973 6.4e-19 96.7 57 80.7
Glyma.15G034300 Glycine max HOM05D004447 ORTHO05D005973 6.4e-19 96.7 57 80.7
Prupe.4G246200 Prunus persica HOM05D004447 ORTHO05D005973 6.4e-19 96.7 57 80.7
vmacro12587 Vaccinium macrocarpon HOM05D004447 ORTHO05D005973 6.4e-19 96.7 56 82.1
Glyma.13G340100 Glycine max HOM05D004447 ORTHO05D005973 1.4e-18 95.5 57 77.2
Nn8g41218 Nelumbo nucifera HOM05D004447 ORTHO05D005973 1.9e-18 95.1 57 75.4
Nn2g15472 Nelumbo nucifera HOM05D004447 ORTHO05D005973 2.4e-18 94.7 57 73.7
MSTRG.21381 Avicennia marina HOM05D004447 ORTHO05D005973 5.4e-18 93.6 57 77.2
Migut.D00596 Erythranthe guttata HOM05D004447 ORTHO05D005973 5.4e-18 93.6 57 78.9
PGR119G1865 Punica granatum HOM05D004447 ORTHO05D005973 5.4e-18 93.6 57 80.7
Sabra09G0039600 Salix brachista HOM05D004447 ORTHO05D005973 7.0e-18 93.2 57 77.2
Eucgr.J00777 Eucalyptus grandis HOM05D004447 ORTHO05D005973 1.2e-17 92.4 57 77.2
Lsat_1_v5_gn_2_97601 Lactuca sativa HOM05D004447 ORTHO05D005973 1.2e-17 92.4 57 73.7
ECA238G3100 Erigeron canadensis HOM05D004447 ORTHO05D005973 1.6e-17 92.0 57 73.7
Potri.009G054300 Populus trichocarpa HOM05D004447 ORTHO05D005973 1.6e-17 92.0 57 75.4
THA.LOC104799099 Tarenaya hassleriana HOM05D004447 ORTHO05D005973 2.0e-17 91.7 57 77.2
GSVIVG01025279001 Vitis vinifera HOM05D004447 ORTHO05D005973 2.0e-17 91.7 57 75.4
PSO170G1822 Papaver somniferum HOM05D004447 ORTHO05D005973 2.7e-17 91.3 57 75.4
Sp6g04850 Schrenkiella parvula HOM05D004447 ORTHO05D005973 2.7e-17 91.3 57 75.4
Thhalv10029404m.g Eutrema salsugineum HOM05D004447 ORTHO05D005973 4.6e-17 90.5 57 77.2
HanXRQChr07g0197501 Helianthus annuus HOM05D004447 ORTHO05D005973 4.6e-17 90.5 57 73.7
unitig_0.g298 Utricularia gibba HOM05D004447 ORTHO05D005973 7.8e-17 89.7 57 71.9
AL6G47620 Arabidopsis lyrata HOM05D004447 ORTHO05D005973 1.3e-16 89.0 57 71.9
AT4G12620 Arabidopsis thaliana HOM05D004447 ORTHO05D005973 1.3e-16 89.0 57 71.9
BcaB01g01767 Brassica carinata HOM05D004447 ORTHO05D005973 1.3e-16 89.0 57 73.7
BcaC04g21255 Brassica carinata HOM05D004447 ORTHO05D005973 1.3e-16 89.0 57 73.7
A09p26680 Brassica napus HOM05D004447 ORTHO05D005973 1.3e-16 89.0 57 73.7
C09p33790 Brassica napus HOM05D004447 ORTHO05D005973 1.3e-16 89.0 57 73.7
BolC9t56215H Brassica oleracea HOM05D004447 ORTHO05D005973 1.3e-16 89.0 57 73.7
BraA09t38238Z Brassica rapa HOM05D004447 ORTHO05D005973 1.3e-16 89.0 57 73.7
Sc16g0011520 Simmondsia chinensis HOM05D004447 ORTHO05D005973 1.3e-16 89.0 57 73.7
Nitab4.5_0000023g0270 Nicotiana tabacum HOM05D004447 ORTHO05D005973 1.7e-16 88.6 57 73.7
DCAR_031545 Daucus carota HOM05D004447 ORTHO05D005973 2.3e-16 88.2 57 70.2
PSO302G0234 Papaver somniferum HOM05D004447 ORTHO05D005973 3.0e-16 87.8 57 73.7
Atru.chr3.2739 Acer truncatum HOM05D004447 ORTHO05D005973 3.9e-16 87.4 57 77.2
Carub.0006s3195 Capsella rubella HOM05D004447 ORTHO05D005973 3.9e-16 87.4 57 71.9
Aa31LG9G10020 Aethionema arabicum HOM05D004447 ORTHO05D005973 6.6e-16 86.7 57 71.9
Hund07518 Selenicereus undatus HOM05D004447 ORTHO05D005973 6.6e-16 86.7 57 71.9
AT4G14700 Arabidopsis thaliana HOM05D004447 ORTHO05D005973 8.6e-16 86.3 57 68.4
CARHR253540 Cardamine hirsuta HOM05D004447 ORTHO05D005973 8.6e-16 86.3 57 68.4
SHI27481 Sapria himalayana HOM05D004447 ORTHO05D005973 8.6e-16 86.3 57 66.7
GSVIVG01025457001 Vitis vinifera HOM05D004447 ORTHO05D005973 1.5e-15 85.5 56 73.2
CAN.G289.50 Capsicum annuum HOM05D004447 ORTHO05D005973 2.5e-15 84.7 57 71.9
Solyc03g006420.4 Solanum lycopersicum HOM05D004447 ORTHO05D005973 2.5e-15 84.7 57 71.9
Sopen03g002430 Solanum pennellii HOM05D004447 ORTHO05D005973 2.5e-15 84.7 57 71.9
EL10Ac4g10265 Beta vulgaris HOM05D004447 ORTHO05D005973 3.3e-15 84.3 57 68.4
EL10Ac4g10281 Beta vulgaris HOM05D004447 ORTHO05D005973 3.3e-15 84.3 57 68.4
AUR62000111 Chenopodium quinoa HOM05D004447 ORTHO05D005973 1.2e-14 82.4 57 68.4
AUR62019289 Chenopodium quinoa HOM05D004447 ORTHO05D005973 3.6e-14 80.9 57 66.7
ATR0605G286 Amborella trichopoda HOM05D004447 ORTHO05D005973 4.0e-13 77.4 57 61.4
Nitab4.5_0005731g0030 Nicotiana tabacum HOM05D004447 ORTHO05D005973 4.0e-13 77.4 76 55.3
GSVIVG01001925001 Vitis vinifera HOM05D004447 ORTHO05D005973 2.0e-12 75.1 49 73.5
Prupe.5G048200 Prunus persica HOM05D004447 ORTHO05D005973 2.9e-11 71.2 58 60.3
PGSC0003DMG402012812 Solanum tuberosum HOM05D004447 ORTHO05D005973 3.7e-11 70.9 43 74.4
Zm00001eb374440 Zea mays HOM05D004447 ORTHO05D005973 1.4e-10 68.9 56 55.4
SMO145G0037 Selaginella moellendorffii HOM05D004447 ORTHO05D005973 4.1e-10 67.4 57 52.6
Mapoly0041s0101 Marchantia polymorpha HOM05D004447 ORTHO05D005973 9.2e-10 66.2 57 56.1
FAN03G1122 Fragaria x ananassa HOM05D004447 ORTHO05D005973 2.5e-07 58.2 36 72.2
Pp3c9_1080 Physcomitrium patens HOM05D004447 ORTHO05D005973 2.5e-07 58.2 57 50.9
FAN10G0764 Fragaria x ananassa HOM05D004447 ORTHO05D005973 3.3e-07 57.8 32 84.4


User provided reference genes

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