Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G017450 Citrullus lanatus HOM05D002696 ORTHO05D028961 3.2e-54 214.9 114 100.0
ClCG05G007340 Citrullus lanatus HOM05D002696 ORTHO05D003940 7.1e-30 134.0 103 71.8
MELO3C006807.2 Cucumis melo HOM05D002696 ORTHO05D003940 1.3e-28 129.8 103 69.9
Sed0008600 Sechium edule HOM05D002696 ORTHO05D003940 3.9e-28 128.3 103 68.9
CsaV3_3G016100 Cucumis sativus L. HOM05D002696 ORTHO05D003940 1.8e-25 119.4 92 71.7
Cpa.g.sc3.331 Carica papaya HOM05D002696 ORTHO05D003940 1.2e-21 106.7 103 55.3
CANSAT56G0989 Cannabis sativa HOM05D002696 ORTHO05D003940 1.3e-20 103.2 103 54.4
Glyma.13G202100 Glycine max HOM05D002696 ORTHO05D003940 6.6e-20 100.9 103 55.3
EL10Ac2g04892 Beta vulgaris HOM05D002696 ORTHO05D003940 3.3e-19 98.6 103 50.5
Glyma.12G236600 Glycine max HOM05D002696 ORTHO05D003940 5.6e-19 97.8 103 53.4
CiPaw.04G059400 Carya illinoinensis HOM05D002696 ORTHO05D003940 2.1e-18 95.9 103 49.5
Duzib068G1251 Durio zibethinus HOM05D002696 ORTHO05D003940 2.1e-18 95.9 103 50.5
Ciclev10004183m.g Citrus clementina HOM05D002696 ORTHO05D003940 4.8e-18 94.7 103 49.5
Potri.003G108400 Populus trichocarpa HOM05D002696 ORTHO05D003940 4.8e-18 94.7 103 51.5
Manes.14G036500 Manihot esculenta HOM05D002696 ORTHO05D003940 6.2e-18 94.4 103 53.4
VMungo1127G1101 Vigna mungo HOM05D002696 ORTHO05D003940 6.2e-18 94.4 103 51.5
Potri.001G125000 Populus trichocarpa HOM05D002696 ORTHO05D003940 8.1e-18 94.0 103 49.5
Sc10g0002620 Simmondsia chinensis HOM05D002696 ORTHO05D003940 1.1e-17 93.6 103 49.5
MD01G1182300 Malus domestica HOM05D002696 ORTHO05D003940 1.4e-17 93.2 103 48.5
Medtr8g037325 Medicago truncatula HOM05D002696 ORTHO05D003940 1.4e-17 93.2 103 49.5
Psat4g148760 Pisum sativum HOM05D002696 ORTHO05D003940 1.4e-17 93.2 103 50.5
BolC3t18703H Brassica oleracea HOM05D002696 ORTHO05D003940 1.8e-17 92.8 103 49.5
FvH4_7g27370 Fragaria vesca HOM05D002696 ORTHO05D003940 3.1e-17 92.0 103 46.6
FAN06G4003 Fragaria x ananassa HOM05D002696 ORTHO05D003940 3.1e-17 92.0 103 46.6
THA.LOC104821413 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 3.1e-17 92.0 103 50.5
BcaB01g00921 Brassica carinata HOM05D002696 ORTHO05D003940 4.0e-17 91.7 103 48.5
COL.COLO4_14108 Corchorus olitorius HOM05D002696 ORTHO05D003940 4.0e-17 91.7 103 49.5
Nitab4.5_0003490g0070 Nicotiana tabacum HOM05D002696 ORTHO05D003940 5.3e-17 91.3 103 47.6
AL5G26680 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 9.0e-17 90.5 103 50.5
FAN06G3257 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.2e-16 90.1 103 44.7
Aa31LG4G16260 Aethionema arabicum HOM05D002696 ORTHO05D003940 1.5e-16 89.7 103 51.5
Gohir.D03G107000 Gossypium hirsutum HOM05D002696 ORTHO05D003940 1.5e-16 89.7 103 46.6
A06p20190 Brassica napus HOM05D002696 ORTHO05D003940 2.0e-16 89.4 103 48.5
FAN06G1881 Fragaria x ananassa HOM05D002696 ORTHO05D003940 2.0e-16 89.4 103 45.6
AT3G47460 Arabidopsis thaliana HOM05D002696 ORTHO05D003940 2.6e-16 89.0 103 50.5
FvH4_7g25682 Fragaria vesca HOM05D002696 ORTHO05D003940 2.6e-16 89.0 103 44.7
MD07G1252800 Malus domestica HOM05D002696 ORTHO05D003940 2.6e-16 89.0 103 46.6
BcaC01g01822 Brassica carinata HOM05D002696 ORTHO05D003940 3.4e-16 88.6 103 47.6
A06p29110 Brassica napus HOM05D002696 ORTHO05D003940 3.4e-16 88.6 103 49.5
BolC3t19451H Brassica oleracea HOM05D002696 ORTHO05D003940 3.4e-16 88.6 103 47.6
CAN.G48.39 Capsicum annuum HOM05D002696 ORTHO05D003940 3.4e-16 88.6 103 46.6
Gohir.A03G059100 Gossypium hirsutum HOM05D002696 ORTHO05D003940 3.4e-16 88.6 103 46.6
Gorai.003G113400 Gossypium raimondii HOM05D002696 ORTHO05D003940 3.4e-16 88.6 103 45.6
Nn4g25061 Nelumbo nucifera HOM05D002696 ORTHO05D003940 3.4e-16 88.6 102 49.0
Phvul.011G211100 Phaseolus vulgaris HOM05D002696 ORTHO05D003940 3.4e-16 88.6 103 50.5
Atru.chr1.739 Acer truncatum HOM05D002696 ORTHO05D003940 4.5e-16 88.2 103 47.6
Carub.0005s1355 Capsella rubella HOM05D002696 ORTHO05D003940 4.5e-16 88.2 103 49.5
CARHR276190 Cardamine hirsuta HOM05D002696 ORTHO05D003940 4.5e-16 88.2 103 48.5
Gohir.A07G041900 Gossypium hirsutum HOM05D002696 ORTHO05D003940 4.5e-16 88.2 103 46.6
Gohir.D07G046000 Gossypium hirsutum HOM05D002696 ORTHO05D003940 5.8e-16 87.8 103 45.6
Gorai.001G049100 Gossypium raimondii HOM05D002696 ORTHO05D003940 5.8e-16 87.8 103 45.6
Lalb_Chr01g0008031 Lupinus albus HOM05D002696 ORTHO05D003940 5.8e-16 87.8 103 47.6
RcHm_v2.0_Chr1g0374201 Rosa chinensis HOM05D002696 ORTHO05D003940 5.8e-16 87.8 103 45.6
Sabra01G0096100 Salix brachista HOM05D002696 ORTHO05D003940 5.8e-16 87.8 81 54.3
DCAR_020185 Daucus carota HOM05D002696 ORTHO05D003940 7.6e-16 87.4 103 45.6
AL8G39240 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 1.3e-15 86.7 103 48.5
BraA06t25103Z Brassica rapa HOM05D002696 ORTHO05D003940 1.3e-15 86.7 103 47.6
FAN01G1209 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.3e-15 86.7 103 43.7
Lj1A979T80 Lonicera japonica HOM05D002696 ORTHO05D003940 1.3e-15 86.7 97 49.5
Thhalv10010077m.g Eutrema salsugineum HOM05D002696 ORTHO05D003940 1.7e-15 86.3 103 45.6
Rhsim03G0166400 Rhododendron simsii HOM05D002696 ORTHO05D003940 2.2e-15 85.9 103 47.6
THA.LOC104818260 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 2.2e-15 85.9 94 52.1
Nitab4.5_0002816g0060 Nicotiana tabacum HOM05D002696 ORTHO05D003940 2.9e-15 85.5 103 44.7
SHI28001 Sapria himalayana HOM05D002696 ORTHO05D000023 4.9e-15 84.7 104 46.2
Lj3g0024722 Lotus japonicus HOM05D002696 ORTHO05D003940 8.4e-15 84.0 72 59.7
Os01g0904400 Oryza sativa ssp. japonica HOM05D002696 ORTHO05D003940 8.4e-15 84.0 102 44.1
FvH4_7g28371 Fragaria vesca HOM05D002696 ORTHO05D003940 1.1e-14 83.6 85 50.6
FAN06G4118 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.1e-14 83.6 74 54.1
Thecc.03G154800 Theobroma cacao HOM05D002696 ORTHO05D003940 1.1e-14 83.6 74 54.1
Hund13894 Selenicereus undatus HOM05D002696 ORTHO05D003940 1.4e-14 83.2 80 50.0
C03p71600 Brassica napus HOM05D002696 ORTHO05D003940 1.9e-14 82.8 103 45.6
CARHR156100 Cardamine hirsuta HOM05D002696 ORTHO05D003940 1.9e-14 82.8 103 44.7
FAN10G0424 Fragaria x ananassa HOM05D002696 ORTHO05D003940 2.4e-14 82.4 74 52.7
Aqoxy2G00559 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 4.2e-14 81.6 94 47.9
MBI08_g38581_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D003940 4.2e-14 81.6 74 52.7
TPR.G1877 Trifolium pratense HOM05D002696 ORTHO05D003940 4.2e-14 81.6 72 56.9
FvH4_7g27644 Fragaria vesca HOM05D002696 ORTHO05D003940 7.1e-14 80.9 85 48.2
FAN06G4966 Fragaria x ananassa HOM05D002696 ORTHO05D003940 7.1e-14 80.9 74 52.7
Lsat_1_v5_gn_8_8781 Lactuca sativa HOM05D002696 ORTHO05D003940 9.3e-14 80.5 79 50.6
FAN03G1343 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.2e-13 80.1 67 56.7
FAN03G1522 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.2e-13 80.1 67 56.7
ATR0618G100 Amborella trichopoda HOM05D002696 ORTHO05D003940 1.6e-13 79.7 103 43.7
PSO384G2493 Papaver somniferum HOM05D002696 ORTHO05D003940 1.6e-13 79.7 103 44.7
Ah.16g103870 Amaranthus hybridus HOM05D002696 ORTHO05D003940 2.1e-13 79.3 73 52.1
SalBow8G1580 Salvia bowleyana HOM05D002696 ORTHO05D003940 2.1e-13 79.3 102 43.1
Oeu022477.1 Olea europaea HOM05D002696 ORTHO05D003940 2.7e-13 79.0 100 46.0
Cc06_g23360 Coffea canephora HOM05D002696 ORTHO05D003940 3.5e-13 78.6 103 41.7
Eucgr.A02895 Eucalyptus grandis HOM05D002696 ORTHO05D003940 3.5e-13 78.6 100 47.0
Migut.F00482 Erythranthe guttata HOM05D002696 ORTHO05D003940 4.6e-13 78.2 103 42.7
CSS0022672 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 6.0e-13 77.8 68 55.9
ECA234G3187 Erigeron canadensis HOM05D002696 ORTHO05D003940 6.0e-13 77.8 99 41.4
HanXRQChr08g0223041 Helianthus annuus HOM05D002696 ORTHO05D003940 6.0e-13 77.8 94 42.6
arahy.Tifrunner.gnm1.ann1.BTDY3I Arachis hypogaea HOM05D002696 ORTHO05D003940 1.0e-12 77.0 67 56.7
MSTRG.8828 Avicennia marina HOM05D002696 ORTHO05D003940 1.3e-12 76.6 103 41.7
FAN06G2222 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.8e-12 76.3 89 44.9
FAN06G4022 Fragaria x ananassa HOM05D002696 ORTHO05D028961 1.8e-12 76.3 89 44.9
Zm00001eb144310 Zea mays HOM05D002696 ORTHO05D003940 1.8e-12 76.3 103 40.8
FvH4_7g27350 Fragaria vesca HOM05D002696 ORTHO05D003940 3.9e-12 75.1 89 44.9
Solyc03g093250.2 Solanum lycopersicum HOM05D002696 ORTHO05D003940 3.9e-12 75.1 79 49.4
PSO423G0248 Papaver somniferum HOM05D002696 ORTHO05D003940 5.1e-12 74.7 101 43.6
Peaxi162Scf00241g00034 Petunia axillaris HOM05D002696 ORTHO05D003940 6.7e-12 74.3 73 50.7
Cfa008155 Carpinus fangiana HOM05D002696 ORTHO05D003940 8.7e-12 73.9 62 61.3
HanXRQChr05g0144341 Helianthus annuus HOM05D002696 ORTHO05D003940 8.7e-12 73.9 101 37.6
TAR633G0051 Trochodendron aralioides HOM05D002696 ORTHO05D003940 1.1e-11 73.6 67 53.7
TAR633G1694 Trochodendron aralioides HOM05D002696 ORTHO05D003940 1.1e-11 73.6 67 53.7
SGA_v2.0_scaffold44G16551 Striga asiatica HOM05D002696 ORTHO05D003940 1.9e-11 72.8 103 40.8
Aqoxy7G02846 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 2.5e-11 72.4 103 42.7
PSO339G0313 Papaver somniferum HOM05D002696 ORTHO05D003940 2.5e-11 72.4 74 50.0
SGA_v2.0_scaffold2G01216 Striga asiatica HOM05D002696 ORTHO05D003940 2.5e-11 72.4 124 39.5
Sp5g14420 Schrenkiella parvula HOM05D002696 ORTHO05D003940 3.3e-11 72.0 103 41.7
Sopen03g024050 Solanum pennellii HOM05D002696 ORTHO05D003940 4.3e-11 71.6 79 48.1
CDE12G0096 Ceratophyllum demersum HOM05D002696 ORTHO05D003940 7.4e-11 70.9 103 38.8
BraA06t25859Z Brassica rapa HOM05D002696 ORTHO05D003940 9.6e-11 70.5 103 42.7
Haze_13890 Corylus avellana HOM05D002696 ORTHO05D003940 9.6e-11 70.5 61 59.0
SEGI_28050 Sequoiadendron giganteum HOM05D002696 ORTHO05D003940 9.6e-11 70.5 104 38.5
MBI08_g12687_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D003940 1.6e-10 69.7 106 40.6
Lalb_Chr03g0034121 Lupinus albus HOM05D002696 ORTHO05D003940 4.8e-10 68.2 68 50.0
vmacro06809 Vaccinium macrocarpon HOM05D002696 ORTHO05D003940 1.4e-09 66.6 69 52.2
CSS0036675 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 1.8e-09 66.2 103 39.8
QL09p005648 Quercus lobata HOM05D002696 ORTHO05D003940 1.8e-09 66.2 58 55.2
arahy.Tifrunner.gnm1.ann1.P8M8R5 Arachis hypogaea HOM05D002696 ORTHO05D003940 3.1e-09 65.5 61 54.1
Prupe.2G276400 Prunus persica HOM05D002696 ORTHO05D003940 5.3e-09 64.7 58 53.4
GSVIVG01018715001 Vitis vinifera HOM05D002696 ORTHO05D003940 2.0e-08 62.8 62 50.0
Carub.0008s2309 Capsella rubella HOM05D002696 ORTHO05D003940 4.5e-08 61.6 60 51.7
Glyma.01G049800 Glycine max HOM05D002696 ORTHO05D028961 1.4e-06 56.6 63 49.2
Glyma.02G060600 Glycine max HOM05D002696 ORTHO05D028961 1.4e-06 56.6 63 49.2
Ca_23897_v3 Cicer arietinum L. HOM05D002696 ORTHO05D003940 4.2e-06 55.1 66 47.0
PGR042G0896 Punica granatum HOM05D002696 ORTHO05D003940 7.1e-06 54.3 58 46.6


User provided reference genes

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