Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G017250 Citrullus lanatus HOM05D007456 ORTHO05D009411 1.6e-148 530.4 259 100.0
CsaV3_4G004450 Cucumis sativus L. HOM05D007456 ORTHO05D009411 1.2e-101 374.8 229 82.5
Sed0026452 Sechium edule HOM05D007456 ORTHO05D009411 1.9e-88 330.9 223 74.4
EL10Ac3g05110 Beta vulgaris HOM05D007456 ORTHO05D009411 2.0e-45 188.0 229 46.3
AUR62005926 Chenopodium quinoa HOM05D007456 ORTHO05D009411 4.5e-45 186.8 230 45.7
FAN03G3193 Fragaria x ananassa HOM05D007456 ORTHO05D009411 4.9e-44 183.3 218 49.1
Peaxi162Scf00398g00211 Petunia axillaris HOM05D007456 ORTHO05D009411 8.4e-44 182.6 159 56.0
Cpa.g.sc252.22 Carica papaya HOM05D007456 ORTHO05D009411 1.9e-40 171.4 154 54.5
Nitab4.5_0016432g0010 Nicotiana tabacum HOM05D007456 ORTHO05D009411 2.5e-40 171.0 147 57.1
PGSC0003DMG400023682 Solanum tuberosum HOM05D007456 ORTHO05D009411 5.5e-35 153.3 142 54.9
Sopen10g030890 Solanum pennellii HOM05D007456 ORTHO05D009411 1.6e-34 151.8 142 54.2
Gohir.D04G076800 Gossypium hirsutum HOM05D007456 ORTHO05D009411 1.1e-30 139.0 119 58.0
Thecc.05G207800 Theobroma cacao HOM05D007456 ORTHO05D009411 4.1e-30 137.1 119 58.0
MSTRG.26940 Avicennia marina HOM05D007456 ORTHO05D009411 2.6e-29 134.4 131 49.6
FvH4_7g33530 Fragaria vesca HOM05D007456 ORTHO05D009411 2.6e-29 134.4 186 44.6
BcaC02g09522 Brassica carinata HOM05D007456 ORTHO05D009411 4.5e-29 133.7 141 53.2
Nitab4.5_0004532g0030 Nicotiana tabacum HOM05D007456 ORTHO05D009411 5.9e-29 133.3 117 59.0
FAN19G0065 Fragaria x ananassa HOM05D007456 ORTHO05D009411 3.8e-28 130.6 129 53.5
FvH4_7g33490 Fragaria vesca HOM05D007456 ORTHO05D009411 5.5e-27 126.7 185 43.8
Gorai.012G086600 Gossypium raimondii HOM05D007456 ORTHO05D009411 5.5e-27 126.7 112 56.2
Gohir.A05G338400 Gossypium hirsutum HOM05D007456 ORTHO05D009411 2.1e-26 124.8 111 55.9
vmacro06487 Vaccinium macrocarpon HOM05D007456 ORTHO05D009411 6.7e-25 119.8 117 57.3
CSS0006842 Camellia sinensis var. sinensis HOM05D007456 ORTHO05D009411 1.5e-21 108.6 136 45.6
RcHm_v2.0_Chr1g0383591 Rosa chinensis HOM05D007456 ORTHO05D009411 2.9e-20 104.4 192 37.0
BcaB06g27033 Brassica carinata HOM05D007456 ORTHO05D009411 2.5e-19 101.3 122 50.8
Sp7g05790 Schrenkiella parvula HOM05D007456 ORTHO05D009411 5.5e-19 100.1 179 38.5
Thhalv10004016m.g Eutrema salsugineum HOM05D007456 ORTHO05D009411 7.2e-19 99.8 117 47.9
AL7G45310 Arabidopsis lyrata HOM05D007456 ORTHO05D009411 1.6e-18 98.6 117 48.7
BolC4t25953H Brassica oleracea HOM05D007456 ORTHO05D009411 1.6e-18 98.6 125 48.0
BcaC02g09523 Brassica carinata HOM05D007456 ORTHO05D009411 4.7e-18 97.1 125 48.0
C04p43710 Brassica napus HOM05D007456 ORTHO05D009411 3.0e-17 94.4 121 47.9
A04p10240 Brassica napus HOM05D007456 ORTHO05D009411 3.9e-17 94.0 147 42.9
BraA04t16690Z Brassica rapa HOM05D007456 ORTHO05D009411 3.9e-17 94.0 147 42.9
FAN01G1025 Fragaria x ananassa HOM05D007456 ORTHO05D009411 5.1e-17 93.6 221 33.0
THA.LOC104823813 Tarenaya hassleriana HOM05D007456 ORTHO05D009411 7.4e-16 89.7 117 44.4
Atru.BG.267.p Acer truncatum HOM05D007456 ORTHO05D009411 9.7e-16 89.4 79 57.0
Oeu026572.1 Olea europaea HOM05D007456 ORTHO05D009411 4.8e-15 87.0 133 36.8
TAR375G0715 Trochodendron aralioides HOM05D007456 ORTHO05D009411 4.8e-15 87.0 81 55.6
TAR375G0927 Trochodendron aralioides HOM05D007456 ORTHO05D009411 4.8e-15 87.0 81 55.6
Nn1g09307 Nelumbo nucifera HOM05D007456 ORTHO05D009411 4.1e-14 84.0 80 48.8
Aqoxy245s001 Aquilegia oxysepala HOM05D007456 ORTHO05D009411 5.3e-14 83.6 63 55.6
GSVIVG01024456001 Vitis vinifera HOM05D007456 ORTHO05D009411 5.3e-14 83.6 126 37.3
Oeu055445.1 Olea europaea HOM05D007456 ORTHO05D009411 9.1e-14 82.8 96 45.8
FAN10G0306 Fragaria x ananassa HOM05D007456 ORTHO05D009411 1.5e-13 82.0 135 40.0
FAN10G3274 Fragaria x ananassa HOM05D007456 ORTHO05D009411 1.5e-13 82.0 135 40.0
FvH4_1g26290 Fragaria vesca HOM05D000003 ORTHO05D010713 2.0e-13 81.6 64 59.4
CAN.G128.20 Capsicum annuum HOM05D007456 ORTHO05D009411 4.5e-13 80.5 74 54.1
Rhsim01G0125300 Rhododendron simsii HOM05D007456 ORTHO05D009411 1.0e-12 79.3 72 55.6
AT5G36300 Arabidopsis thaliana HOM05D007456 ORTHO05D009411 2.2e-12 78.2 141 36.2
FAN20G2687 Fragaria x ananassa HOM05D000148 ORTHO05D008179 2.2e-12 78.2 117 35.9
Oeu018668.1 Olea europaea HOM05D007456 ORTHO05D009411 2.2e-12 78.2 105 37.1
QL09p026466 Quercus lobata HOM05D007456 ORTHO05D009411 6.5e-12 76.6 123 41.5
QL09p026540 Quercus lobata HOM05D007456 ORTHO05D009411 6.5e-12 76.6 123 41.5
Cfa015911 Carpinus fangiana HOM05D007456 ORTHO05D009411 8.5e-12 76.3 119 39.5
Glyma.01G230600 Glycine max HOM05D007456 ORTHO05D009411 2.5e-11 74.7 67 53.7
Glyma.11G013600 Glycine max HOM05D007456 ORTHO05D009411 2.5e-11 74.7 65 56.9
Aqoxy3G00913 Aquilegia oxysepala HOM05D007456 ORTHO05D009411 4.2e-11 73.9 66 53.0
RcHm_v2.0_Chr1g0383651 Rosa chinensis HOM05D007456 ORTHO05D009411 7.2e-11 73.2 185 33.5
CDE02G0006 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 2.1e-10 71.6 54 61.1
Haze_00583 Corylus avellana HOM05D007456 ORTHO05D009411 2.7e-10 71.2 119 37.8
AUR62018885 Chenopodium quinoa HOM05D007456 ORTHO05D009411 3.6e-10 70.9 67 50.7
CDE02G0352 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 4.7e-10 70.5 54 59.3
Atru.chr13.134 Acer truncatum HOM05D006705 ORTHO05D008179 8.0e-10 69.7 88 42.0
ATR0661G389 Amborella trichopoda HOM05D006705 ORTHO05D008179 8.0e-10 69.7 144 29.9
Sc19g0000290 Simmondsia chinensis HOM05D007456 ORTHO05D009411 1.0e-09 69.3 87 42.5
PGR142G2334 Punica granatum HOM05D007456 ORTHO05D009411 1.4e-09 68.9 65 52.3
Ah.07g203680 Amaranthus hybridus HOM05D007456 ORTHO05D009411 1.8e-09 68.6 135 31.1
Lsat_1_v5_gn_4_134121 Lactuca sativa HOM05D007456 ORTHO05D009411 1.8e-09 68.6 93 41.9
CANSAT01G2728 Cannabis sativa HOM05D000001 ORTHO05D000003 3.0e-09 67.8 166 30.7
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 4.0e-09 67.4 142 32.4
Sc15g0004450 Simmondsia chinensis HOM05D006705 ORTHO05D008179 4.0e-09 67.4 89 40.4
MBI13_g23885_MAGBIO Magnolia biondii HOM05D007456 ORTHO05D009411 5.2e-09 67.0 64 53.1
Manes.08G164911 Manihot esculenta HOM05D007456 ORTHO05D009411 6.7e-09 66.6 126 37.3
AUR62030634 Chenopodium quinoa HOM05D000001 ORTHO05D000003 8.8e-09 66.2 221 25.8
Dinv11972 Davidia involucrata HOM05D007456 ORTHO05D009411 8.8e-09 66.2 88 44.3
Migut.F00108 Erythranthe guttata HOM05D007456 ORTHO05D009411 8.8e-09 66.2 126 29.4
CDE02G1751 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 1.5e-08 65.5 85 42.4
Atru.chr7.2398 Acer truncatum HOM05D000001 ORTHO05D000003 2.0e-08 65.1 140 30.7
Actinidia19939 Actinidia chinensis HOM05D000001 ORTHO05D010258 2.6e-08 64.7 150 28.7
Hma1.2p1_0758F.1_g213530 Hydrangea macrophylla HOM05D007456 ORTHO05D009411 2.6e-08 64.7 69 49.3
Rhsim06G0007500 Rhododendron simsii HOM05D006705 ORTHO05D008179 2.6e-08 64.7 87 40.2
Sabra05G0193800 Salix brachista HOM05D006705 ORTHO05D008179 2.6e-08 64.7 82 41.5
Actinidia08731 Actinidia chinensis HOM05D007456 ORTHO05D009411 3.3e-08 64.3 65 47.7
Manes.03G016100 Manihot esculenta HOM05D000001 ORTHO05D000003 5.7e-08 63.5 140 30.0
Oeu049407.2 Olea europaea HOM05D007390 ORTHO05D009114 7.5e-08 63.2 99 31.3
TAR376G0127 Trochodendron aralioides HOM05D000001 ORTHO05D010258 7.5e-08 63.2 150 28.0
Aa31LG10G8340 Aethionema arabicum HOM05D001779 ORTHO05D001753 1.3e-07 62.4 123 30.1
Cpa.g.sc108.57 Carica papaya HOM05D007358 ORTHO05D009117 1.3e-07 62.4 158 25.9
DCAR_010527 Daucus carota HOM05D006163 ORTHO05D007625 1.3e-07 62.4 162 27.2
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 1.3e-07 62.4 138 29.0
Atru.chr2.238 Acer truncatum HOM05D000001 ORTHO05D009381 1.7e-07 62.0 151 30.5
HanXRQChr09g0260511 Helianthus annuus HOM05D007456 ORTHO05D009411 1.7e-07 62.0 60 53.3
Lj9A258G53 Lonicera japonica HOM05D007456 ORTHO05D009411 1.7e-07 62.0 66 48.5
Lj6g0026853 Lotus japonicus HOM05D000001 ORTHO05D010258 1.7e-07 62.0 144 31.2
Lalb_Chr02g0154271 Lupinus albus HOM05D006596 ORTHO05D008497 1.7e-07 62.0 149 23.5
Manes.15G104800 Manihot esculenta HOM05D000001 ORTHO05D010258 1.7e-07 62.0 168 28.6
EL10Ac1g00453 Beta vulgaris HOM05D000001 ORTHO05D010175 2.2e-07 61.6 150 29.3
Gohir.D05G166900 Gossypium hirsutum HOM05D000001 ORTHO05D010258 2.2e-07 61.6 156 28.8
MD16G1272700 Malus domestica HOM05D000001 ORTHO05D009704 2.2e-07 61.6 152 28.9
HPP92_003551 Vanilla planifolia HOM05D000001 ORTHO05D010258 2.2e-07 61.6 161 29.2
HPP92_011454 Vanilla planifolia HOM05D000001 ORTHO05D000003 2.2e-07 61.6 139 30.9
Aa31LG11G1530 Aethionema arabicum HOM05D005764 ORTHO05D006600 2.8e-07 61.2 165 26.7
MD08G1148200 Malus domestica HOM05D000001 ORTHO05D000003 3.7e-07 60.8 134 30.6
RcHm_v2.0_Chr1g0346171 Rosa chinensis HOM05D000104 ORTHO05D009920 3.7e-07 60.8 143 28.0
arahy.Tifrunner.gnm1.ann1.3WH4B0 Arachis hypogaea HOM05D000001 ORTHO05D009381 4.8e-07 60.5 134 31.3
arahy.Tifrunner.gnm1.ann1.4ZA6W0 Arachis hypogaea HOM05D000001 ORTHO05D009381 4.8e-07 60.5 134 31.3
ECA248G1043 Erigeron canadensis HOM05D000001 ORTHO05D000003 4.8e-07 60.5 184 26.6
Nitab4.5_0003005g0060 Nicotiana tabacum HOM05D000001 ORTHO05D000003 4.8e-07 60.5 133 29.3
Potri.006G252400 Populus trichocarpa HOM05D000001 ORTHO05D000003 4.8e-07 60.5 140 30.0
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 6.3e-07 60.1 143 26.6
TWI23G0172 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 6.3e-07 60.1 155 27.7
Zm00001eb323580 Zea mays HOM05D006705 ORTHO05D008179 8.2e-07 59.7 101 37.6
Os06g0184866 Oryza sativa ssp. japonica HOM05D007486 ORTHO05D003673 1.1e-06 59.3 147 26.5
Prupe.2G122500 Prunus persica HOM05D000104 ORTHO05D009920 1.1e-06 59.3 143 27.3
PGR119G1317 Punica granatum HOM05D000891 ORTHO05D000761 1.1e-06 59.3 118 26.3
TPR.G15648 Trifolium pratense HOM05D000001 ORTHO05D000003 1.1e-06 59.3 160 28.1
TAR375G0727 Trochodendron aralioides HOM05D000001 ORTHO05D009891 1.1e-06 59.3 136 27.2
CANSAT78G0097 Cannabis sativa HOM05D008684 ORTHO05D010796 1.4e-06 58.9 141 27.0
ECA233G4980 Erigeron canadensis HOM05D000001 ORTHO05D009381 1.4e-06 58.9 143 28.0
Thhalv10003830m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 1.4e-06 58.9 147 29.9
Gohir.D06G192800 Gossypium hirsutum HOM05D000891 ORTHO05D000761 1.4e-06 58.9 126 27.0
CiPaw.06G020600 Carya illinoinensis HOM05D007456 ORTHO05D009411 1.8e-06 58.5 59 47.5
Medtr1g012380 Medicago truncatula HOM05D000001 ORTHO05D000003 1.8e-06 58.5 160 27.5
Nitab4.5_0003680g0090 Nicotiana tabacum HOM05D000001 ORTHO05D000003 1.8e-06 58.5 133 28.6
vmacro01583 Vaccinium macrocarpon HOM05D000001 ORTHO05D009381 1.8e-06 58.5 148 29.1
Atru.chr10.968 Acer truncatum HOM05D000891 ORTHO05D000761 2.4e-06 58.2 133 23.3
BcaB05g25293 Brassica carinata HOM05D000891 ORTHO05D000761 2.4e-06 58.2 144 25.7
Carub.0005s1970 Capsella rubella HOM05D001779 ORTHO05D001753 2.4e-06 58.2 123 30.9
Thhalv10011131m.g Eutrema salsugineum HOM05D001779 ORTHO05D001753 2.4e-06 58.2 123 29.3
Lj7P709T35 Lonicera japonica HOM05D000001 ORTHO05D010146 2.4e-06 58.2 138 32.6
SalBow1G4634 Salvia bowleyana HOM05D042251 ORTHO05D002854 2.4e-06 58.2 152 25.0
Hund05113 Selenicereus undatus HOM05D006705 ORTHO05D008179 2.4e-06 58.2 68 44.1
Atru.chr1.2212 Acer truncatum HOM05D000001 ORTHO05D010775 3.1e-06 57.8 136 29.4
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 3.1e-06 57.8 143 26.6
Gorai.009G172000 Gossypium raimondii HOM05D000001 ORTHO05D010258 3.1e-06 57.8 138 29.7
Lj6A711T68 Lonicera japonica HOM05D000001 ORTHO05D000003 3.1e-06 57.8 136 28.7
MD13G1224800 Malus domestica HOM05D000001 ORTHO05D010218 3.1e-06 57.8 145 31.0
PSO170G2138 Papaver somniferum HOM05D006705 ORTHO05D008179 3.1e-06 57.8 68 45.6
PSO210G3824 Papaver somniferum HOM05D006705 ORTHO05D008179 3.1e-06 57.8 68 45.6
Psat6g029560 Pisum sativum HOM05D000001 ORTHO05D000003 3.1e-06 57.8 160 27.5
Sc20g0004090 Simmondsia chinensis HOM05D000855 ORTHO05D008530 3.1e-06 57.8 150 26.7
BcaB07g31128 Brassica carinata HOM05D000001 ORTHO05D009381 4.1e-06 57.4 135 28.9
Cc02_g35300 Coffea canephora HOM05D000001 ORTHO05D009381 4.1e-06 57.4 132 31.1
Lsat_1_v5_gn_9_104640 Lactuca sativa HOM05D000001 ORTHO05D010596 4.1e-06 57.4 161 27.3
Nitab4.5_0003410g0050 Nicotiana tabacum HOM05D000891 ORTHO05D000761 4.1e-06 57.4 118 26.3
SEGI_02163 Sequoiadendron giganteum HOM05D007104 ORTHO05D008851 4.1e-06 57.4 157 27.4
Thecc.01G208700 Theobroma cacao HOM05D000001 ORTHO05D000003 4.1e-06 57.4 136 29.4
BcaB02g07294 Brassica carinata HOM05D000891 ORTHO05D000761 5.3e-06 57.0 144 24.3
C04p09160 Brassica napus HOM05D007559 ORTHO05D009642 5.3e-06 57.0 145 27.6
Cc08_g00860 Coffea canephora HOM05D000001 ORTHO05D000003 5.3e-06 57.0 140 30.0
Migut.E01795 Erythranthe guttata HOM05D000001 ORTHO05D000003 5.3e-06 57.0 191 26.7
Lsat_1_v5_gn_8_137361 Lactuca sativa HOM05D000001 ORTHO05D009381 5.3e-06 57.0 137 29.2
Manes.08G089400 Manihot esculenta HOM05D000104 ORTHO05D009920 5.3e-06 57.0 143 27.3
Nn5g30939 Nelumbo nucifera HOM05D006705 ORTHO05D008179 5.3e-06 57.0 68 45.6
Peaxi162Scf00089g00051 Petunia axillaris HOM05D000001 ORTHO05D000003 5.3e-06 57.0 137 26.3
Actinidia16370 Actinidia chinensis HOM05D000001 ORTHO05D000003 7.0e-06 56.6 160 28.8
Haze_20657 Corylus avellana HOM05D000855 ORTHO05D008530 7.0e-06 56.6 135 29.6
Gohir.A05G164000 Gossypium hirsutum HOM05D000001 ORTHO05D010258 7.0e-06 56.6 138 28.3
MD10G1149700 Malus domestica HOM05D000001 ORTHO05D000003 7.0e-06 56.6 128 28.9
Atru.chr3.547 Acer truncatum HOM05D000891 ORTHO05D000761 9.1e-06 56.2 143 23.1
Ciclev10010438m.g Citrus clementina HOM05D000001 ORTHO05D000003 9.1e-06 56.2 131 29.0
COL.COLO4_12925 Corchorus olitorius HOM05D000891 ORTHO05D000761 9.1e-06 56.2 158 22.2
FAN05G1965 Fragaria x ananassa HOM05D000162 ORTHO05D000090 9.1e-06 56.2 76 38.2
Glyma.17G209700 Glycine max HOM05D000001 ORTHO05D000003 9.1e-06 56.2 134 29.1
Gohir.A05G054700 Gossypium hirsutum HOM05D000001 ORTHO05D000003 9.1e-06 56.2 133 30.8
PGR083G2871 Punica granatum HOM05D000001 ORTHO05D009689 9.1e-06 56.2 131 27.5
PGR102G1363 Punica granatum HOM05D000001 ORTHO05D011283 9.1e-06 56.2 126 32.5
Sabra02G0008200 Salix brachista HOM05D006705 ORTHO05D008179 9.1e-06 56.2 82 36.6
Sp2g06170 Schrenkiella parvula HOM05D000001 ORTHO05D009381 9.1e-06 56.2 135 26.7
Solyc10g080330.2 Solanum lycopersicum HOM05D007456 ORTHO05D009411 9.1e-06 56.2 38 60.5


User provided reference genes

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