Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G016940 Citrullus lanatus HOM05D003586 ORTHO05D004036 0.0e+00 3269.6 1698 100.0
CsaV3_4G004170 Cucumis sativus L. HOM05D003586 ORTHO05D004036 0.0e+00 2786.5 1683 87.2
Sed0010855 Sechium edule HOM05D003586 ORTHO05D004036 0.0e+00 2580.4 1686 81.2
Cfa013573 Carpinus fangiana HOM05D003586 ORTHO05D004036 0.0e+00 1762.3 1692 56.7
Haze_22192 Corylus avellana HOM05D003586 ORTHO05D004036 0.0e+00 1689.9 1692 55.0
QL09p028029 Quercus lobata HOM05D003586 ORTHO05D004036 0.0e+00 1673.7 1738 53.3
Ciclev10004122m.g Citrus clementina HOM05D003586 ORTHO05D004036 0.0e+00 1606.7 1692 52.4
Dinv06595 Davidia involucrata HOM05D003586 ORTHO05D004036 0.0e+00 1606.3 1681 52.0
MD07G1249300 Malus domestica HOM05D003586 ORTHO05D004036 0.0e+00 1603.2 1696 53.0
Prupe.2G273000 Prunus persica HOM05D003586 ORTHO05D004036 0.0e+00 1582.4 1691 52.5
Thecc.03G149300 Theobroma cacao HOM05D003586 ORTHO05D004036 0.0e+00 1580.8 1719 52.2
TAR375G0563 Trochodendron aralioides HOM05D003586 ORTHO05D004036 0.0e+00 1580.5 1700 51.1
Potri.003G151500 Populus trichocarpa HOM05D003586 ORTHO05D004036 0.0e+00 1574.7 1686 51.7
Manes.14G038400 Manihot esculenta HOM05D003586 ORTHO05D004036 0.0e+00 1572.4 1693 51.7
Gorai.001G050900 Gossypium raimondii HOM05D003586 ORTHO05D004036 0.0e+00 1560.0 1718 51.2
TWI23G0434 Tripterygium wilfordii HOM05D003586 ORTHO05D004036 0.0e+00 1556.2 1697 50.8
Gohir.D07G047701 Gossypium hirsutum HOM05D003586 ORTHO05D004036 0.0e+00 1552.3 1718 51.0
FvH4_7g26990 Fragaria vesca HOM05D003586 ORTHO05D004036 0.0e+00 1534.2 1688 51.2
CSS0040773 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 0.0e+00 1528.5 1694 50.8
GSVIVG01013976001 Vitis vinifera HOM05D003586 ORTHO05D004036 0.0e+00 1521.1 1707 50.4
RcHm_v2.0_Chr1g0373721 Rosa chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1516.9 1693 50.3
Sabra03G0109700 Salix brachista HOM05D003586 ORTHO05D004036 0.0e+00 1512.7 1755 48.9
FAN03G1177 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1507.7 1709 50.4
FAN10G2285 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1507.3 1723 50.1
Gohir.A07G043301 Gossypium hirsutum HOM05D003586 ORTHO05D004036 0.0e+00 1503.8 1724 50.0
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 0.0e+00 1503.0 1752 48.9
FAN06G2502 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1502.6 1720 50.2
CSS0004894 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 0.0e+00 1501.5 1694 50.3
FAN01G1639 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1498.4 1723 50.0
Rhsim03G0161600 Rhododendron simsii HOM05D003586 ORTHO05D004036 0.0e+00 1486.5 1756 48.2
vmacro06834 Vaccinium macrocarpon HOM05D003586 ORTHO05D004036 0.0e+00 1482.6 1704 49.2
LjContig00272g0012466 Lotus japonicus HOM05D003586 ORTHO05D004036 0.0e+00 1476.5 1691 49.3
Lalb_Chr04g0248471 Lupinus albus HOM05D003586 ORTHO05D004036 0.0e+00 1455.3 1691 48.4
Nn1g00886 Nelumbo nucifera HOM05D003586 ORTHO05D004036 0.0e+00 1448.3 1708 47.7
Glyma.02G290200 Glycine max HOM05D003586 ORTHO05D004036 0.0e+00 1436.0 1696 47.8
Ca_26483_v3 Cicer arietinum L. HOM05D003586 ORTHO05D004036 0.0e+00 1435.6 1695 48.0
Psat2g013320 Pisum sativum HOM05D003586 ORTHO05D004036 0.0e+00 1434.5 1696 48.7
Glyma.14G024600 Glycine max HOM05D003586 ORTHO05D004036 0.0e+00 1433.7 1701 47.7
arahy.Tifrunner.gnm1.ann1.1899LM Arachis hypogaea HOM05D003586 ORTHO05D004036 0.0e+00 1419.1 1699 47.5
arahy.Tifrunner.gnm1.ann1.DI5547 Arachis hypogaea HOM05D003586 ORTHO05D004036 0.0e+00 1417.1 1697 47.3
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 0.0e+00 1410.6 1685 48.0
Oeu060859.1 Olea europaea HOM05D003586 ORTHO05D004036 0.0e+00 1408.3 1693 47.2
DCAR_027698 Daucus carota HOM05D003586 ORTHO05D004036 0.0e+00 1399.8 1704 46.8
Eucgr.A02921 Eucalyptus grandis HOM05D003586 ORTHO05D004036 0.0e+00 1398.3 1695 46.9
Phvul.008G266400 Phaseolus vulgaris HOM05D003586 ORTHO05D004036 0.0e+00 1395.9 1700 46.8
Duzib205G0263 Durio zibethinus HOM05D003586 ORTHO05D004036 0.0e+00 1393.6 1710 47.7
CANSAT56G2655 Cannabis sativa HOM05D003586 ORTHO05D004036 0.0e+00 1388.6 1736 47.4
CiPaw.07G185400 Carya illinoinensis HOM05D003586 ORTHO05D004036 0.0e+00 1373.6 1484 50.5
PGR042G0622 Punica granatum HOM05D003586 ORTHO05D004036 0.0e+00 1372.8 1696 47.8
Nitab4.5_0003173g0040 Nicotiana tabacum HOM05D003586 ORTHO05D004036 0.0e+00 1362.8 1701 46.2
Nitab4.5_0005495g0020 Nicotiana tabacum HOM05D003586 ORTHO05D004036 0.0e+00 1360.9 1728 45.4
Sopen03g024310 Solanum pennellii HOM05D003586 ORTHO05D004036 0.0e+00 1340.1 1699 45.7
Solyc03g093480.3 Solanum lycopersicum HOM05D003586 ORTHO05D004036 0.0e+00 1339.3 1699 45.6
Aqoxy7G00839 Aquilegia oxysepala HOM05D003586 ORTHO05D004036 0.0e+00 1332.4 1709 46.3
MSTRG.139 Avicennia marina HOM05D003586 ORTHO05D004036 0.0e+00 1327.4 1693 45.5
Peaxi162Scf00271g00727 Petunia axillaris HOM05D003586 ORTHO05D004036 0.0e+00 1323.1 1698 44.9
PSO732G0142 Papaver somniferum HOM05D003586 ORTHO05D004036 0.0e+00 1312.4 1702 44.2
THA.LOC104811536 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 0.0e+00 1310.8 1762 43.8
AUR62025663 Chenopodium quinoa HOM05D003586 ORTHO05D004036 0.0e+00 1308.1 1701 44.3
PSO675G9104 Papaver somniferum HOM05D003586 ORTHO05D004036 0.0e+00 1307.7 1703 44.5
EL10Ac7g18161 Beta vulgaris HOM05D003586 ORTHO05D004036 0.0e+00 1307.0 1695 44.8
Lj8C46T11 Lonicera japonica HOM05D003586 ORTHO05D004036 0.0e+00 1295.0 1689 45.9
AUR62001342 Chenopodium quinoa HOM05D003586 ORTHO05D004036 0.0e+00 1293.1 1699 44.0
Lsat_1_v5_gn_8_9561 Lactuca sativa HOM05D003586 ORTHO05D004036 0.0e+00 1290.0 1701 45.3
Medtr5g092370 Medicago truncatula HOM05D003586 ORTHO05D004036 0.0e+00 1287.7 1699 46.0
HanXRQChr05g0139491 Helianthus annuus HOM05D003586 ORTHO05D004036 0.0e+00 1287.3 1702 44.7
Thhalv10019871m.g Eutrema salsugineum HOM05D003586 ORTHO05D004036 0.0e+00 1284.2 1746 43.9
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 0.0e+00 1283.1 1701 44.7
Cc02_g04680 Coffea canephora HOM05D003586 ORTHO05D004036 0.0e+00 1279.2 1695 44.5
Ah.08g217720 Amaranthus hybridus HOM05D003586 ORTHO05D004036 0.0e+00 1266.9 1685 44.3
Hund18595 Selenicereus undatus HOM05D003586 ORTHO05D004036 0.0e+00 1266.5 1693 43.9
Carub.0003s0599 Capsella rubella HOM05D003586 ORTHO05D004036 0.0e+00 1260.0 1763 42.3
AL3G17560 Arabidopsis lyrata HOM05D003586 ORTHO05D004036 0.0e+00 1254.6 1775 42.3
A05p41500 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1251.9 1739 42.7
BraA05t22871Z Brassica rapa HOM05D003586 ORTHO05D004036 0.0e+00 1250.7 1739 42.7
AT3G06530 Arabidopsis thaliana HOM05D003586 ORTHO05D004036 0.0e+00 1240.3 1764 42.2
BraA03t12653Z Brassica rapa HOM05D003586 ORTHO05D004036 0.0e+00 1237.6 1752 42.2
A03p34730 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1236.9 1750 42.1
C03p42210 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1236.9 1747 42.2
Actinidia13607 Actinidia chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1233.4 1432 49.2
C05p60700 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1233.4 1737 42.4
BolC3t16501H Brassica oleracea HOM05D003586 ORTHO05D004036 0.0e+00 1232.6 1767 41.8
Sp3g05470 Schrenkiella parvula HOM05D003586 ORTHO05D004036 0.0e+00 1226.1 1726 42.1
BolC5t34730H Brassica oleracea HOM05D003586 ORTHO05D004036 0.0e+00 1223.0 1737 42.1
CARHR081080 Cardamine hirsuta HOM05D003586 ORTHO05D004036 0.0e+00 1221.5 1763 42.4
Aa31LG5G17060 Aethionema arabicum HOM05D003586 ORTHO05D004036 0.0e+00 1213.7 1744 42.8
SalBow2G0990 Salvia bowleyana HOM05D003586 ORTHO05D004036 0.0e+00 1208.0 1564 45.2
SGA_v2.0_scaffold56G19917 Striga asiatica HOM05D003586 ORTHO05D004036 0.0e+00 1191.8 1778 41.3
Migut.O00372 Erythranthe guttata HOM05D003586 ORTHO05D004036 0.0e+00 1180.6 1712 42.2
MELO3C017650.2 Cucumis melo HOM05D003586 ORTHO05D004036 0.0e+00 1153.7 698 85.7
CAN.G485.20 Capsicum annuum HOM05D003586 ORTHO05D004036 0.0e+00 1118.6 1477 44.5
SHI14045 Sapria himalayana HOM05D003586 ORTHO05D004036 0.0e+00 1095.9 1849 38.2
ATR0057G101 Amborella trichopoda HOM05D003586 ORTHO05D004036 1.2e-311 1073.5 1725 40.1
Zm00001eb123540 Zea mays HOM05D003586 ORTHO05D004036 2.8e-292 1009.6 1728 37.9
Sc20g0000680 Simmondsia chinensis HOM05D003586 ORTHO05D004036 1.0e-281 974.5 1476 39.6
CDE04G1406 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 2.4e-275 953.4 1696 37.2
Cpa.g.sc13.262 Carica papaya HOM05D003586 ORTHO05D004036 2.2e-268 930.2 987 52.8
Hma1.2p1_1404F.1_g281290 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 3.7e-268 929.5 1153 47.4
unitig_62.g23920 Utricularia gibba HOM05D003586 ORTHO05D004036 2.0e-266 923.7 1707 36.3
HPP92_014934 Vanilla planifolia HOM05D003586 ORTHO05D004036 4.2e-235 819.7 1211 40.6
Atru.chr1.904 Acer truncatum HOM05D003586 ORTHO05D004036 4.3e-224 783.1 903 49.2
MBI05_g26488_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.6e-215 754.6 1338 38.1
MBI05_g28033_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.1e-202 711.1 808 49.8
Hma1.2p1_1404F.1_g281300 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 1.1e-200 705.3 725 53.7
MBI01_g47166_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.7e-178 630.9 848 45.4
MBI13_g48198_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.7e-175 621.7 852 44.7
Mapoly0043s0008 Marchantia polymorpha HOM05D003586 ORTHO05D004036 1.2e-173 615.5 1736 29.4
Pp3c3_10580 Physcomitrium patens HOM05D003586 ORTHO05D004036 3.9e-156 557.4 1728 28.4
MBI13_g42134_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.9e-150 538.5 803 43.8
SMO358G0582 Selaginella moellendorffii HOM05D003586 ORTHO05D004036 3.4e-144 517.7 1696 27.9
FAN06G4468 Fragaria x ananassa HOM05D003586 ORTHO05D004036 8.6e-140 503.1 565 49.6
CBR_g19186 Chara braunii HOM05D003586 ORTHO05D004036 8.7e-132 476.5 1599 26.8
AagrBONN_evm.TU.Sc2ySwM_344.3595 Anthoceros agrestis HOM05D003586 ORTHO05D004036 8.1e-122 443.4 1627 25.4
MBI01_g47186_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 6.2e-114 417.2 695 38.8
MBI01_g18557_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 9.6e-107 393.3 404 53.7
MBI01_g30817_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 7.1e-102 377.1 529 42.7
MBI13_g19469_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 6.5e-95 354.0 744 33.9
HPP92_014907 Vanilla planifolia HOM05D003586 ORTHO05D004036 2.4e-89 335.5 672 34.2
THA.LOC104802945 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 9.1e-89 333.6 266 67.3
SHI14048 Sapria himalayana HOM05D003586 ORTHO05D004036 1.1e-86 326.6 881 31.7
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 3.0e-84 318.5 398 43.5
Oeu013973.1 Olea europaea HOM05D003586 ORTHO05D004036 7.4e-83 313.9 305 54.1
Cpa.g.sc13.260 Carica papaya HOM05D003586 ORTHO05D004036 9.7e-75 287.0 642 32.9
Os04g0548300 Oryza sativa ssp. japonica HOM05D003586 ORTHO05D004036 1.0e-71 276.9 232 63.4
Migut.F01200 Erythranthe guttata HOM05D003586 ORTHO05D004036 5.5e-70 271.2 220 65.0
Glyma.08G286950 Glycine max HOM05D003586 ORTHO05D004036 7.2e-70 270.8 342 42.1
CANSAT56G4028 Cannabis sativa HOM05D003586 ORTHO05D004036 5.3e-65 254.6 350 40.9
MBI01_g24305_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.8e-60 239.6 333 43.8
Cre12.g548000 Chlamydomonas reinhardtii HOM05D003586 ORTHO05D004036 1.7e-55 223.0 484 32.2
PSO782G1165 Papaver somniferum HOM05D003586 ORTHO05D004036 3.4e-51 208.8 348 39.4
Dinv06589 Davidia involucrata HOM05D003586 ORTHO05D004036 2.0e-48 199.5 127 79.5
MBI01_g47337_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 7.8e-48 197.6 474 33.3
Lsat_1_v5_gn_1_161 Lactuca sativa HOM05D003586 ORTHO05D004036 3.9e-47 195.3 316 37.3
PGSC0003DMG400010751 Solanum tuberosum HOM05D003586 ORTHO05D004036 3.4e-43 182.2 112 83.9
Atru.chr1.903 Acer truncatum HOM05D003586 ORTHO05D004036 6.4e-42 177.9 274 42.3
SHI14050 Sapria himalayana HOM05D003586 ORTHO05D004036 1.9e-41 176.4 145 62.1
MBI01_g18556_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.1e-36 160.6 363 35.0
MCO07G739 Micromonas commoda HOM05D003586 ORTHO05D004036 1.1e-36 160.6 584 25.0
Rhsim03G0111100 Rhododendron simsii HOM05D003586 ORTHO05D004036 1.6e-32 146.7 316 32.9
MBI13_g17200_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.1e-32 146.4 94 79.8
PSO782G1733 Papaver somniferum HOM05D003586 ORTHO05D004036 3.6e-29 135.6 222 36.5
Psat1g100680 Pisum sativum HOM05D003266 ORTHO05D003718 5.8e-27 128.3 232 36.2
CAN.G485.19 Capsicum annuum HOM05D003586 ORTHO05D004036 4.9e-26 125.2 136 46.3
Psat5g116160 Pisum sativum HOM05D003586 ORTHO05D004036 8.3e-26 124.4 155 46.5
SEGI_01219 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 1.4e-25 123.6 237 28.7
Cfa023294 Carpinus fangiana HOM05D003586 ORTHO05D004036 1.1e-22 114.0 941 22.1
SalBow2G2772 Salvia bowleyana HOM05D003586 ORTHO05D004036 1.5e-22 113.6 122 51.6
Ah.05g175250 Amaranthus hybridus HOM05D003586 ORTHO05D004036 1.3e-18 100.5 128 38.3
HPP92_014933 Vanilla planifolia HOM05D003586 ORTHO05D004036 2.9e-18 99.4 207 34.3
Psat1g036520 Pisum sativum HOM05D003586 ORTHO05D004036 2.4e-17 96.3 181 37.0
Psat0s4928g0040 Pisum sativum HOM05D000188 ORTHO05D003976 7.8e-16 91.3 77 53.2
VMungo0251G1425 Vigna mungo HOM05D003586 ORTHO05D004036 3.0e-15 89.4 162 30.2
PRCOL_00000377 Prasinoderma coloniale HOM05D003586 ORTHO05D004036 1.1e-14 87.4 501 23.8
SEGI_38341 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 3.3e-14 85.9 201 30.3
SEGI_04827 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 1.4e-12 80.5 131 35.1
SHI14054 Sapria himalayana HOM05D003586 ORTHO05D004036 5.3e-12 78.6 58 67.2
Psat0s9248g0040 Pisum sativum HOM05D000015 ORTHO05D018950 1.5e-11 77.0 113 38.1
C05p54660 Brassica napus HOM05D000558 ORTHO05D004036 2.2e-10 73.2 289 26.3
CDE12G0325 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 8.4e-10 71.2 86 48.8
Actinidia09313 Actinidia chinensis HOM05D003586 ORTHO05D004036 5.4e-09 68.6 68 45.6
SEGI_27748 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 1.0e-07 64.3 150 35.3
Psat5g053280 Pisum sativum HOM05D003586 ORTHO05D004036 5.1e-07 62.0 63 52.4
Ca_11520_v3 Cicer arietinum L. HOM05D003586 ORTHO05D009105 1.9e-06 60.1 50 48.0


User provided reference genes

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