Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 0.0e+00 2044.2 1056 100.0
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 0.0e+00 1692.6 941 92.8
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 0.0e+00 1686.4 939 92.3
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 0.0e+00 1540.8 952 84.1
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 0.0e+00 1104.4 883 64.3
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 0.0e+00 1079.7 877 62.5
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 5.3e-297 1024.6 917 58.7
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 1.7e-295 1019.6 882 59.8
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 3.8e-295 1018.5 890 61.0
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 2.5e-294 1015.8 881 59.9
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 3.2e-294 1015.4 883 59.7
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 1.0e-292 1010.4 883 59.1
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 2.8e-290 1002.3 879 58.7
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 1.5e-288 996.5 891 57.4
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 3.4e-288 995.3 884 58.3
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 7.7e-288 994.2 894 58.6
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 1.0e-287 993.8 883 59.1
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 1.4e-286 989.9 882 58.2
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 2.1e-285 986.1 884 57.6
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 8.8e-284 980.7 876 58.4
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 5.7e-283 978.0 884 56.8
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 9.4e-278 960.7 878 57.4
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 2.6e-275 952.6 879 58.2
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 6.3e-274 948.0 877 56.3
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 1.1e-273 947.2 877 56.0
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 7.0e-273 944.5 877 55.9
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 2.0e-272 943.0 877 55.8
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 7.7e-272 941.0 867 56.3
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 6.5e-271 937.9 764 62.6
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 1.5e-270 936.8 880 56.1
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 1.4e-268 930.2 876 56.5
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 4.0e-268 928.7 877 55.3
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 4.4e-267 925.2 886 55.3
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.2e-266 922.9 877 54.7
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 4.8e-266 921.8 881 54.7
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 2.2e-263 912.9 882 54.9
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 2.9e-263 912.5 881 54.6
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 1.2e-261 907.1 913 54.8
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 1.6e-261 906.7 874 54.9
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 2.7e-261 906.0 886 54.4
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.0e-260 904.0 886 54.5
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 2.3e-260 902.9 884 54.8
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 5.2e-260 901.7 877 54.3
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 6.8e-260 901.4 883 54.7
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 2.8e-258 896.0 852 54.9
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 4.1e-257 892.1 888 54.2
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 9.2e-257 891.0 908 53.3
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 8.6e-255 884.4 852 54.5
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 7.3e-254 881.3 850 55.1
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 9.5e-254 880.9 877 53.0
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.2e-253 880.6 896 53.1
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 2.8e-253 879.4 884 53.1
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 5.2e-252 875.2 852 54.1
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 2.6e-251 872.8 870 54.4
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 6.4e-250 868.2 909 52.3
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 4.1e-249 865.5 878 53.5
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 4.6e-248 862.1 839 54.1
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 1.7e-247 860.1 876 53.8
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 1.1e-246 857.4 773 59.2
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 1.1e-246 857.4 920 52.4
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 1.6e-245 853.6 882 52.3
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 1.0e-239 834.3 882 51.0
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 1.5e-238 830.5 890 51.2
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 2.8e-237 826.2 887 50.6
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 3.4e-235 819.3 830 52.7
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 2.2e-234 816.6 914 49.8
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 3.2e-233 812.8 881 49.6
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 7.1e-233 811.6 875 49.9
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 3.0e-231 806.2 943 48.4
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 3.9e-231 805.8 881 51.9
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 2.5e-230 803.1 864 49.1
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 3.4e-227 792.7 851 50.2
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 3.0e-223 779.6 886 49.0
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 1.1e-222 777.7 852 50.4
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 2.4e-220 770.0 1337 38.4
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 1.2e-216 757.7 888 47.0
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.8e-213 746.5 882 47.7
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 3.6e-213 746.1 866 46.5
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.2e-211 741.1 882 47.5
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 4.9e-210 735.7 877 47.9
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 1.4e-209 734.2 854 46.8
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.5e-206 724.2 896 46.9
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.4e-204 717.6 875 46.7
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 3.4e-203 713.0 859 46.9
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 1.4e-201 707.6 858 46.7
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 1.4e-201 707.6 858 46.7
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 3.3e-198 696.4 858 46.0
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 4.3e-198 696.0 858 45.9
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 9.6e-198 694.9 858 45.9
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 1.7e-194 684.1 852 44.8
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 9.3e-193 678.3 867 44.1
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 9.3e-193 678.3 864 46.2
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 2.1e-192 677.2 859 43.5
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 2.7e-192 676.8 854 44.3
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 3.0e-191 673.3 854 44.5
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 3.9e-191 672.9 832 44.5
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 3.3e-190 669.8 852 44.4
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 2.8e-189 666.8 854 44.1
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 4.8e-189 666.0 759 49.4
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 1.1e-188 664.8 882 44.0
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.6e-187 660.2 677 54.2
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 1.3e-186 657.9 853 43.1
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 2.6e-179 633.6 872 42.1
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 1.7e-178 630.9 1378 33.7
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 8.5e-178 628.6 903 40.9
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 3.6e-176 623.2 525 61.0
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 5.1e-175 619.4 879 41.9
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 8.2e-165 585.5 862 40.6
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 1.1e-164 585.1 858 42.1
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 1.2e-163 581.6 900 39.4
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 5.3e-156 556.2 878 40.0
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 1.0e-154 552.0 570 53.9
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 3.2e-145 520.4 465 57.8
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 1.8e-140 504.6 411 60.8
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 1.0e-138 498.8 423 60.3
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 1.5e-126 458.4 653 44.3
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 5.0e-122 443.4 335 65.4
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 5.1e-114 416.8 320 64.7
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 1.2e-107 395.6 429 49.2
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 4.6e-107 393.7 388 52.1
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 1.2e-104 385.6 803 33.0
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 1.8e-103 381.7 794 31.9
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 1.2e-102 379.0 1107 26.9
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 6.0e-99 366.7 312 58.0
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 3.9e-98 364.0 412 47.6
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 1.3e-96 359.0 358 53.4
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 1.3e-96 359.0 392 49.7
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 1.6e-91 342.0 480 40.4
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 1.9e-89 335.1 392 47.4
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 3.3e-89 334.3 458 43.7
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 5.6e-89 333.6 363 49.9
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 7.6e-86 323.2 385 47.8
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 9.9e-86 322.8 279 57.7
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 3.9e-82 310.8 596 35.6
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 9.3e-76 289.7 348 45.4
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 5.7e-73 280.4 420 39.5
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 1.0e-69 269.6 291 48.8
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 3.2e-68 264.6 251 53.0
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 4.8e-64 250.8 514 32.9
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 6.9e-63 246.9 195 60.0
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 2.1e-59 235.3 279 47.7
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 4.7e-59 234.2 179 63.7
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 8.8e-58 229.9 181 64.6
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.2e-54 219.5 337 38.9
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 9.7e-49 199.9 329 35.6
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 2.8e-48 198.4 359 33.7
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 2.9e-45 188.3 139 63.3
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 5.5e-44 184.1 337 38.9
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 3.0e-42 178.3 207 49.3
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 3.7e-40 171.4 184 53.3
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 9.4e-36 156.8 160 50.6
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 1.6e-35 156.0 119 59.7
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 3.6e-35 154.8 243 37.9
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 4.7e-35 154.5 134 56.7
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 3.4e-33 148.3 181 47.5
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 8.3e-32 143.7 145 53.1
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 5.4e-31 141.0 100 66.0
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 1.6e-30 139.4 200 43.5
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 1.3e-29 136.3 85 70.6
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 1.3e-29 136.3 128 51.6
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 4.2e-28 131.3 128 56.2
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 2.3e-26 125.6 134 49.3
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 5.2e-26 124.4 151 46.4
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 8.9e-26 123.6 88 67.0
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 3.4e-25 121.7 84 61.9
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 2.8e-24 118.6 89 66.3
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 1.6e-22 112.8 139 44.6
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 1.6e-22 112.8 80 71.2
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 5.9e-22 110.9 90 60.0
MCO03G148 Micromonas commoda HOM05D003469 ORTHO05D004084 1.9e-20 105.9 994 21.2
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 4.3e-20 104.8 87 58.6
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.1e-19 102.4 126 46.0
PRCOL_00004204 Prasinoderma coloniale HOM05D003469 ORTHO05D004084 1.7e-16 92.8 943 21.4
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 2.2e-16 92.4 112 42.9
Ca_19033_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.0e-13 83.6 59 66.1
AagrBONN_evm.TU.Sc2ySwM_362.2853 Anthoceros agrestis HOM05D003469 ORTHO05D004084 4.3e-12 78.2 96 40.6
MD17G1140900 Malus domestica HOM05D003469 ORTHO05D004084 6.2e-11 74.3 85 49.4
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 1.5e-09 69.7 51 62.7
Lj9A422T78 Lonicera japonica HOM05D003469 ORTHO05D029064 4.9e-08 64.7 85 45.9
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 6.4e-08 64.3 84 44.0
QL01p054481 Quercus lobata HOM05D003469 ORTHO05D004084 1.1e-07 63.5 48 56.2
Actinidia02458 Actinidia chinensis HOM05D003469 ORTHO05D004084 1.9e-07 62.8 68 50.0
Glyma.04G168200 Glycine max HOM05D003469 ORTHO05D004084 2.4e-07 62.4 49 65.3
Lsat_1_v5_gn_6_14080 Lactuca sativa HOM05D002718 ORTHO05D004084 2.4e-07 62.4 195 28.2
Medtr4g074700 Medicago truncatula HOM05D003469 ORTHO05D004084 3.2e-07 62.0 96 38.5
BcaB02g08777 Brassica carinata HOM05D003469 ORTHO05D004084 2.7e-06 58.9 153 34.6


User provided reference genes

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