Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 4.1e-198 694.5 348 100.0
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 5.7e-155 551.2 307 91.9
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 3.7e-154 548.5 307 91.5
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 1.0e-143 513.8 309 86.1
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 5.9e-128 461.5 307 74.9
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 8.5e-127 457.6 307 75.9
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 8.0e-125 451.1 308 75.3
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 1.0e-124 450.7 308 74.4
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 1.8e-124 449.9 308 74.7
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 6.8e-124 448.0 307 75.2
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 6.8e-124 448.0 309 74.8
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 8.8e-124 447.6 307 74.3
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 1.5e-123 446.8 308 74.4
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 4.4e-123 445.3 308 74.0
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 5.7e-123 444.9 310 74.2
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 7.5e-123 444.5 311 74.0
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 1.7e-122 443.4 308 74.7
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 4.8e-122 441.8 307 72.0
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 5.4e-121 438.3 306 73.5
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 4.5e-120 435.3 308 71.4
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 6.5e-119 431.4 307 71.3
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 1.5e-118 430.3 307 71.3
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 1.9e-118 429.9 314 70.4
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 1.9e-118 429.9 325 69.5
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 2.5e-118 429.5 308 72.4
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 2.5e-118 429.5 329 68.7
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 4.2e-118 428.7 307 72.0
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 9.4e-118 427.6 307 70.7
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 2.1e-117 426.4 367 62.9
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 2.7e-117 426.0 308 70.1
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 4.7e-117 425.2 272 79.0
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 1.0e-116 424.1 309 70.2
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 1.8e-116 423.3 360 62.2
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 3.0e-116 422.5 311 69.5
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 3.0e-116 422.5 308 70.5
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 5.2e-116 421.8 308 70.1
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 1.5e-115 420.2 280 74.6
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 2.0e-115 419.9 308 69.8
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 2.6e-115 419.5 276 77.2
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 3.4e-115 419.1 306 69.6
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 4.4e-115 418.7 342 65.8
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 7.5e-115 417.9 311 70.4
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 2.8e-114 416.0 316 68.4
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 3.7e-114 415.6 306 68.3
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 3.7e-114 415.6 310 69.4
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 8.3e-114 414.5 314 69.1
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 1.1e-113 414.1 281 73.0
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 3.1e-113 412.5 311 70.1
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 4.1e-113 412.1 273 76.9
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 5.4e-113 411.8 309 68.0
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 9.2e-113 411.0 308 69.5
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 1.2e-112 410.6 307 68.4
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 2.0e-112 409.8 307 69.1
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 2.7e-112 409.5 307 69.1
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 3.5e-112 409.1 307 68.4
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 1.7e-111 406.8 271 75.6
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 2.3e-111 406.4 304 68.4
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 5.0e-111 405.2 307 68.7
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 6.6e-111 404.8 290 72.1
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 6.6e-111 404.8 283 71.4
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 1.1e-110 404.1 314 66.9
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 1.1e-110 404.1 307 68.1
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.9e-110 403.3 302 69.9
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 2.5e-110 402.9 321 66.0
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 3.3e-110 402.5 305 67.9
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 3.3e-110 402.5 311 66.2
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 3.3e-110 402.5 305 66.9
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 4.3e-110 402.1 305 67.2
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 5.6e-110 401.7 282 71.3
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 1.6e-109 400.2 287 70.7
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 2.8e-109 399.4 305 66.9
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 6.1e-109 398.3 282 70.9
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 8.0e-109 397.9 304 66.8
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 8.0e-109 397.9 305 67.2
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 1.4e-108 397.1 304 65.1
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 1.4e-108 397.1 282 69.9
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 1.8e-108 396.7 305 67.2
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 8.9e-108 394.4 247 79.8
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 2.9e-106 389.4 307 66.1
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 2.9e-106 389.4 277 72.6
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 4.9e-106 388.7 308 66.9
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 1.2e-104 384.0 307 65.8
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 1.6e-104 383.6 308 65.3
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 1.6e-104 383.6 303 64.4
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 3.5e-104 382.5 306 65.0
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 4.6e-104 382.1 316 64.2
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 1.0e-103 380.9 297 64.3
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 3.3e-102 375.9 306 65.7
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 1.2e-101 374.0 346 58.7
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 2.8e-101 372.9 280 70.4
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 4.7e-101 372.1 332 60.8
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 1.8e-100 370.2 276 68.8
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 3.7e-98 362.5 219 86.8
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 6.4e-98 361.7 261 68.2
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 7.0e-97 358.2 284 64.1
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 2.0e-96 356.7 332 59.3
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 7.3e-94 348.2 301 59.5
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 8.1e-93 344.7 289 61.2
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 4.0e-92 342.4 262 67.2
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 8.9e-92 341.3 257 66.5
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 1.5e-91 340.5 254 68.9
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 4.4e-91 339.0 263 66.5
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 2.9e-90 336.3 263 66.5
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 3.5e-88 329.3 268 65.3
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 4.6e-88 328.9 265 64.9
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 1.0e-87 327.8 254 63.8
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 1.3e-87 327.4 263 65.0
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 1.2e-85 320.9 249 65.9
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 1.4e-84 317.4 251 66.1
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 7.6e-83 311.6 247 62.8
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 2.2e-82 310.1 275 57.5
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 2.7e-80 303.1 247 61.5
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 6.0e-80 302.0 269 59.5
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 1.5e-78 297.4 221 69.7
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 5.6e-78 295.4 310 55.8
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 2.8e-77 293.1 202 72.3
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 3.1e-76 289.7 273 55.7
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 1.2e-75 287.7 220 64.5
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 5.6e-70 268.9 248 56.5
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 6.9e-60 235.3 219 57.5
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 1.9e-54 217.2 288 44.4
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 9.0e-52 208.4 246 48.8
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 2.9e-50 203.4 284 39.1
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 1.3e-47 194.5 155 65.8
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 1.5e-43 181.0 109 78.0
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 1.3e-42 177.9 109 78.0
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 1.1e-41 174.9 112 74.1
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 1.0e-39 168.3 260 38.8
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 2.8e-37 160.2 272 37.9
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 2.2e-34 150.6 88 81.8
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 1.8e-31 141.0 114 63.2
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-29 134.8 154 53.9
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 1.8e-28 131.0 87 73.6
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 3.6e-24 116.7 113 58.4
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 3.7e-21 106.7 91 62.6
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 3.1e-20 103.6 71 73.2
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 4.1e-20 103.2 179 38.5
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 5.5e-17 92.8 297 26.6
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 2.7e-16 90.5 249 29.7
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 1.4e-15 88.2 113 46.9
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 1.2e-14 85.1 67 61.2
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 1.5e-14 84.7 232 30.6
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 3.7e-13 80.1 74 52.7
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 1.8e-12 77.8 85 54.1
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 5.3e-12 76.3 221 28.1
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 4.5e-11 73.2 47 68.1
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 1.3e-10 71.6 220 26.4
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 8.5e-10 68.9 72 50.0
Cre06.g253755 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145199 1.1e-09 68.6 307 24.8
Cre06.g253459 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146359 1.5e-09 68.2 307 24.8
Sopen03g014100 Solanum pennellii HOM05D004931 ORTHO05D006579 1.6e-08 64.7 41 70.7
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 2.6e-06 57.4 67 49.3
Cre06.g253566 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D138934 4.4e-06 56.6 112 33.9
Cre06.g253851 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145445 4.4e-06 56.6 112 33.9


User provided reference genes

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