Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 0.0e+00 1832.8 1594 100.0
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 0.0e+00 1393.3 1584 78.2
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 0.0e+00 1350.1 1581 72.4
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 4.1e-309 1065.4 1441 78.8
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 2.6e-303 1046.2 1579 65.3
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 4.4e-202 709.9 1574 43.8
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 1.6e-191 674.9 1575 45.7
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 4.0e-187 660.2 1575 45.1
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 2.3e-179 634.4 1580 44.7
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 7.0e-176 622.9 1582 43.3
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 7.0e-176 622.9 1582 43.3
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 1.6e-175 621.7 1579 42.9
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 1.2e-172 612.1 1492 45.2
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 6.6e-166 589.7 1586 38.5
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 8.0e-164 582.8 1575 42.2
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 4.0e-163 580.5 1015 42.7
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 4.0e-163 580.5 1574 40.6
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 2.0e-162 578.2 1584 41.0
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 1.3e-161 575.5 1581 43.1
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 7.1e-160 569.7 1580 40.5
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 1.7e-158 565.1 1642 38.1
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 6.6e-158 563.1 1582 39.4
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 3.6e-156 557.4 1580 40.8
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 3.4e-154 550.8 1627 39.0
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 6.4e-153 546.6 1555 39.5
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 2.4e-152 544.7 1580 42.6
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 6.0e-151 540.0 1577 42.1
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 5.1e-150 537.0 1572 41.3
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 1.1e-149 535.8 1580 41.8
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 1.4e-147 528.9 1572 43.2
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 1.2e-146 525.8 1572 39.8
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 1.6e-143 515.4 1582 43.2
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 4.6e-143 513.8 1575 38.0
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 1.1e-141 509.2 1586 42.6
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 3.3e-141 507.7 1577 41.7
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 4.8e-140 503.8 1579 41.2
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 4.4e-138 497.3 1572 38.0
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 9.9e-138 496.1 1641 38.8
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 1.3e-137 495.7 1668 38.3
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 1.9e-136 491.9 1558 40.9
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 6.0e-135 486.9 1601 40.3
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.9e-133 481.9 1579 38.6
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 5.6e-133 480.3 1597 37.4
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 2.8e-132 478.0 1583 38.3
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 7.6e-130 469.9 1776 36.6
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.9e-129 468.0 1575 41.8
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 2.7e-127 461.5 1642 37.7
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 7.9e-127 459.9 1575 36.4
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 3.0e-126 458.0 1572 40.8
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 3.4e-122 444.5 1572 39.5
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 5.8e-122 443.7 1582 41.0
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 6.5e-121 440.3 1575 40.1
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 1.4e-120 439.1 1579 45.1
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 3.2e-120 438.0 1592 38.0
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 3.2e-120 438.0 1590 37.3
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 7.1e-120 436.8 1576 38.6
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 7.1e-120 436.8 1581 35.0
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 9.3e-120 436.4 1579 38.4
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 3.5e-119 434.5 1575 39.4
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 1.5e-117 429.1 1583 40.9
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 6.2e-116 423.7 1582 36.0
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 1.0e-113 416.4 528 51.5
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 1.3e-113 416.0 1026 44.1
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 2.2e-113 415.2 972 45.5
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 5.1e-110 404.1 1031 38.3
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 1.1e-109 402.9 997 41.6
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 4.1e-107 394.4 1605 35.0
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 7.7e-106 390.2 1592 37.7
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 7.7e-106 390.2 1592 37.7
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 4.6e-103 380.9 1775 33.7
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 5.7e-101 374.0 1581 38.1
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.2e-100 372.1 1576 38.9
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 6.3e-100 370.5 1582 32.5
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 1.4e-99 369.4 1573 38.0
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.3e-97 362.8 1576 38.7
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 8.5e-97 360.1 1575 40.8
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 1.1e-96 359.8 1287 29.1
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.4e-96 359.4 1576 37.5
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 1.1e-93 349.7 1587 33.0
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 8.2e-92 343.6 1575 36.5
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 3.1e-91 341.7 817 36.5
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 1.0e-89 336.7 527 46.3
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 3.8e-89 334.7 978 42.7
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 9.7e-85 320.1 1583 36.4
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 1.5e-80 306.2 1339 37.9
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 3.2e-80 305.1 1571 32.6
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 4.0e-78 298.1 1591 37.6
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 7.7e-74 283.9 974 29.7
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 1.2e-66 260.0 732 48.9
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 7.7e-66 257.3 369 48.5
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 9.5e-64 250.4 1041 40.0
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 1.4e-62 246.5 319 47.6
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 1.2e-61 243.4 1015 40.4
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 1.4e-51 209.9 282 46.8
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 8.6e-49 200.7 512 40.8
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 3.6e-47 195.3 403 38.2
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 6.2e-47 194.5 1500 27.9
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 1.8e-46 193.0 264 46.6
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 1.1e-43 183.7 339 38.6
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 9.2e-43 180.6 1111 28.5
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 6.6e-41 174.5 341 46.3
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 3.3e-40 172.2 271 49.8
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 1.2e-39 170.2 291 43.0
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 2.3e-38 166.0 339 38.9
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 4.0e-38 165.2 1577 31.9
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 2.0e-37 162.9 340 40.3
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 7.6e-37 161.0 339 39.8
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.3e-36 160.2 450 33.6
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 5.4e-35 154.8 1361 27.7
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 1.6e-34 153.3 303 46.9
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 7.8e-34 151.0 253 44.3
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 2.3e-33 149.4 331 39.6
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 5.1e-33 148.3 342 44.4
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 2.8e-31 142.5 800 26.1
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 2.8e-31 142.5 340 43.8
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 3.6e-31 142.1 362 34.3
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 8.1e-31 141.0 340 33.8
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 3.1e-30 139.0 243 51.9
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 4.0e-30 138.7 340 35.6
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 2.0e-29 136.3 340 36.2
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 2.6e-29 136.0 397 43.8
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 3.4e-29 135.6 988 36.6
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.1e-27 130.6 245 38.8
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 9.3e-27 127.5 203 43.3
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 2.7e-26 125.9 304 43.8
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 2.7e-26 125.9 339 36.3
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 3.9e-25 122.1 342 40.6
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 5.1e-25 121.7 340 42.1
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 5.1e-25 121.7 340 42.1
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 5.6e-24 118.2 457 28.4
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 1.3e-23 117.1 339 33.0
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 2.8e-23 115.9 1607 34.9
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 3.6e-23 115.5 1586 28.3
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 4.8e-23 115.2 233 38.2
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 2.4e-22 112.8 341 41.9
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 3.1e-22 112.5 340 32.4
SEGI_00522 Sequoiadendron giganteum HOM05D003806 ORTHO05D004346 9.0e-22 110.9 430 27.2
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 2.0e-21 109.8 886 30.4
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 7.6e-21 107.8 142 45.1
Aa31LG1G19380 Aethionema arabicum HOM05D003806 ORTHO05D004346 7.6e-21 107.8 142 45.1
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.4e-19 103.6 154 56.5
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 5.1e-17 95.1 237 40.9
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 6.6e-17 94.7 456 45.0
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.5e-16 93.6 237 40.9
MD09G1138300 Malus domestica HOM05D003806 ORTHO05D004346 1.9e-16 93.2 108 50.0
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 5.6e-16 91.7 1576 33.8
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 5.6e-16 91.7 340 32.4
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 2.1e-15 89.7 306 31.7
Os04g0614650 Oryza sativa ssp. japonica HOM05D003806 ORTHO05D004346 6.2e-15 88.2 274 33.2
AUR62044057 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.4e-14 87.0 225 33.8
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 1.8e-14 86.7 743 27.7
Zm00001eb430870 Zea mays HOM05D003806 ORTHO05D004346 4.5e-13 82.0 319 31.7
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 5.8e-13 81.6 340 36.5
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 2.2e-12 79.7 341 29.6
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.8e-12 79.0 120 40.8
AUR62044188 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.8e-12 79.0 223 32.3
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 1.1e-11 77.4 336 29.2
HPP92_027643 Vanilla planifolia HOM05D003806 ORTHO05D004346 3.2e-11 75.9 184 35.3
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 5.5e-11 75.1 374 27.5
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 7.1e-11 74.7 1578 21.0
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 9.3e-11 74.3 121 46.3
A09p67490 Brassica napus HOM05D003806 ORTHO05D004346 1.0e-09 70.9 139 34.5
BraA09t42077Z Brassica rapa HOM05D003806 ORTHO05D004346 1.0e-09 70.9 139 34.5
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 3.0e-09 69.3 101 40.6
Peaxi162Scf00271g00618 Petunia axillaris HOM05D006663 ORTHO05D008269 1.1e-08 67.4 104 47.1
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 1.9e-08 66.6 323 32.5
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 2.5e-08 66.2 1443 26.5
unitig_699.g19629 Utricularia gibba HOM05D003806 ORTHO05D004346 4.8e-07 62.0 81 43.2
CDE06G0039 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 9.0e-06 57.8 79 41.8


User provided reference genes

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