Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.4e-201 705.3 353 100.0
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 4.7e-189 664.5 356 94.1
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 3.1e-185 651.7 356 91.6
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 1.8e-169 599.4 359 85.5
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 9.2e-153 543.9 343 78.7
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 3.5e-152 542.0 343 78.7
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 3.5e-152 542.0 349 78.5
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 3.0e-151 538.9 351 76.6
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 6.6e-151 537.7 346 78.0
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 1.5e-150 536.6 351 77.2
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 1.6e-149 533.1 346 78.0
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.8e-149 532.3 351 76.4
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 2.8e-149 532.3 351 75.5
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 8.0e-149 530.8 351 76.1
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.4e-148 530.0 352 75.6
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 1.4e-148 530.0 345 77.7
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.8e-148 529.6 352 75.0
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 6.8e-148 527.7 351 76.4
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 1.5e-147 526.6 320 80.0
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 1.5e-147 526.6 351 75.8
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 2.0e-147 526.2 343 76.4
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 2.0e-147 526.2 351 76.1
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 2.6e-147 525.8 351 76.1
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 3.4e-147 525.4 348 75.9
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 5.8e-147 524.6 347 75.2
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 9.8e-147 523.9 351 74.1
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.7e-146 523.1 346 74.9
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 4.9e-146 521.5 350 75.7
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 4.9e-146 521.5 330 79.1
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 6.4e-146 521.2 348 74.4
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.1e-145 520.4 346 74.6
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 2.4e-145 519.2 343 76.4
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 3.2e-145 518.8 351 75.2
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 3.2e-145 518.8 351 75.2
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 9.2e-145 517.3 351 74.9
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 1.2e-144 516.9 347 75.5
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.6e-144 516.5 352 73.6
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 4.6e-144 515.0 351 74.4
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 7.8e-144 514.2 345 74.2
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 7.8e-144 514.2 325 78.2
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.3e-143 512.7 357 72.5
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 5.0e-143 511.5 338 74.6
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 8.6e-143 510.8 368 72.0
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 1.5e-142 510.0 375 70.1
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 4.3e-142 508.4 352 71.6
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 5.6e-142 508.1 406 66.3
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 1.6e-141 506.5 358 70.4
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.1e-141 506.1 352 71.3
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 3.6e-141 505.4 351 73.2
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 8.1e-141 504.2 354 71.8
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 8.1e-141 504.2 352 71.3
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.4e-140 503.4 320 78.1
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 2.3e-140 502.7 348 73.6
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 8.9e-140 500.7 351 71.8
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 8.9e-140 500.7 352 71.6
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 1.2e-139 500.4 356 70.8
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 2.6e-139 499.2 329 76.6
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 7.5e-139 497.7 353 70.5
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 7.5e-139 497.7 322 75.8
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 1.3e-138 496.9 354 71.2
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.3e-138 496.9 349 71.6
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 1.3e-138 496.9 375 66.9
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 2.2e-138 496.1 350 70.9
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 2.2e-138 496.1 344 71.8
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 3.7e-138 495.4 382 68.6
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 6.4e-138 494.6 349 70.2
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 6.4e-138 494.6 331 74.9
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 8.3e-138 494.2 347 71.8
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 1.4e-137 493.4 350 70.6
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 1.9e-137 493.0 328 73.8
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 4.1e-137 491.9 347 71.2
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 7.1e-137 491.1 347 71.2
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 1.2e-136 490.3 346 71.7
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 1.2e-136 490.3 329 74.2
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 2.1e-136 489.6 328 73.8
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 6.0e-136 488.0 350 70.3
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 6.0e-136 488.0 353 69.7
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 1.0e-135 487.3 308 77.9
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.0e-135 487.3 355 69.9
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 1.3e-135 486.9 345 70.7
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 1.7e-135 486.5 350 69.7
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 1.7e-135 486.5 349 70.5
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 2.3e-135 486.1 353 68.3
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 3.9e-135 485.3 339 72.0
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 1.5e-134 483.4 348 69.5
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 1.9e-134 483.0 324 72.8
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 2.5e-134 482.6 350 68.9
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 4.3e-134 481.9 350 69.7
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 2.1e-133 479.6 349 70.2
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 2.8e-133 479.2 349 69.3
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 3.6e-133 478.8 349 69.3
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 3.6e-133 478.8 346 69.4
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 4.7e-133 478.4 349 70.2
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 8.1e-133 477.6 353 68.3
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 1.1e-132 477.2 356 66.9
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.1e-132 477.2 343 70.3
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 4.0e-132 475.3 330 74.8
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 4.0e-132 475.3 328 73.8
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 6.8e-132 474.6 354 67.5
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 1.2e-131 473.8 329 72.0
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 1.2e-131 473.8 389 64.0
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 1.5e-131 473.4 322 73.0
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 3.4e-131 472.2 322 72.7
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 4.4e-131 471.9 357 65.8
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 9.9e-131 470.7 320 73.1
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.3e-130 470.3 321 72.9
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 1.7e-130 469.9 344 69.2
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 1.7e-130 469.9 321 72.0
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 6.4e-130 468.0 337 69.7
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 8.4e-130 467.6 333 71.2
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.7e-128 462.6 333 70.3
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 1.0e-127 460.7 399 61.2
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 1.3e-127 460.3 349 68.8
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 2.3e-127 459.5 321 71.7
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 2.5e-126 456.1 353 67.7
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 1.6e-125 453.4 330 68.8
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 2.1e-125 453.0 326 69.0
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 6.2e-125 451.4 325 68.3
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 2.4e-124 449.5 348 64.9
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.0e-123 446.4 310 72.3
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 1.3e-122 443.7 351 67.0
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.7e-122 443.4 311 70.7
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 2.9e-122 442.6 319 69.3
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 3.8e-122 442.2 268 80.2
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 5.4e-121 438.3 351 65.5
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 4.8e-117 425.2 346 64.7
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 1.4e-116 423.7 526 46.8
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 2.9e-114 416.0 275 76.7
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 3.8e-114 415.6 284 76.1
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 7.9e-112 407.9 262 76.0
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 3.3e-110 402.5 349 63.0
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 3.9e-95 352.4 230 73.9
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 5.7e-94 348.6 352 52.6
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 5.3e-92 342.0 204 82.8
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 3.4e-91 339.3 281 64.1
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 5.9e-91 338.6 316 52.8
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 1.0e-90 337.8 243 68.3
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 5.5e-89 332.0 226 73.0
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 9.3e-89 331.3 294 54.8
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 8.2e-85 318.2 267 62.9
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 7.2e-81 305.1 236 65.3
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 3.6e-80 302.8 199 74.9
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 3.9e-71 272.7 162 83.3
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 6.3e-69 265.4 187 72.2
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.6e-64 250.8 187 69.0
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 2.3e-63 246.9 378 40.7
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 3.1e-60 236.5 214 58.4
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 7.7e-59 231.9 161 71.4
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 1.9e-57 227.3 165 69.7
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 4.7e-56 222.6 158 69.0
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 3.5e-51 206.5 254 46.9
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 1.0e-50 204.9 329 40.4
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 8.0e-48 195.3 144 69.4
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 9.2e-44 181.8 197 51.3
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 9.8e-38 161.8 107 76.6
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.7e-29 134.4 337 32.6
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 4.1e-28 129.8 122 52.5
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 3.0e-26 123.6 251 32.7
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 3.6e-24 116.7 344 31.7
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 6.2e-24 115.9 71 81.7
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 6.8e-23 112.5 128 48.4
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 6.6e-18 95.9 59 76.3
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 1.5e-17 94.7 92 53.3
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 5.6e-17 92.8 67 65.7
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 7.3e-17 92.4 55 83.6
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.4e-15 88.2 57 73.7
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 9.2e-12 75.5 77 49.4
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 5.1e-10 69.7 55 60.0


User provided reference genes

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