Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 7.7e-71 270.4 139 100.0
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 4.4e-66 254.6 139 94.2
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 5.7e-66 254.2 139 94.2
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 3.1e-64 248.4 139 91.4
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 3.6e-60 235.0 140 86.4
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 6.1e-60 234.2 140 85.7
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 1.0e-59 233.4 140 85.0
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 3.0e-59 231.9 140 85.0
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 4.0e-59 231.5 140 85.0
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 1.5e-58 229.6 140 86.4
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 5.7e-58 227.6 140 82.1
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 1.3e-57 226.5 140 82.1
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 2.2e-57 225.7 140 84.3
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 4.9e-57 224.6 140 84.3
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 8.3e-57 223.8 140 83.6
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.1e-56 223.4 141 84.4
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.8e-56 222.6 140 81.4
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 3.1e-56 221.9 139 84.2
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 5.4e-56 221.1 140 82.1
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 5.4e-56 221.1 141 83.7
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 5.4e-56 221.1 141 83.7
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 5.4e-56 221.1 140 81.4
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 7.0e-56 220.7 140 82.1
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 7.0e-56 220.7 140 82.1
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.6e-55 219.5 138 83.3
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 2.0e-55 219.2 140 80.7
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 2.7e-55 218.8 136 83.8
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 2.7e-55 218.8 140 80.7
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 2.7e-55 218.8 141 81.6
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 3.5e-55 218.4 140 81.4
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 5.9e-55 217.6 140 81.4
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 1.0e-54 216.9 142 81.0
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 1.3e-54 216.5 140 78.6
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 1.7e-54 216.1 140 80.7
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 2.9e-54 215.3 142 81.0
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 5.0e-54 214.5 140 79.3
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 6.6e-54 214.2 139 79.9
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 6.6e-54 214.2 140 80.0
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 1.9e-53 212.6 141 80.1
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.5e-53 212.2 140 79.3
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 2.5e-53 212.2 140 80.0
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 2.5e-53 212.2 140 80.0
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 2.5e-53 212.2 140 81.4
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 3.3e-53 211.8 141 82.3
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 4.3e-53 211.5 142 78.9
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 4.3e-53 211.5 138 81.2
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 5.6e-53 211.1 140 79.3
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 1.6e-52 209.5 142 80.3
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 1.6e-52 209.5 139 75.5
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 1.6e-52 209.5 136 79.4
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 1.6e-52 209.5 141 81.6
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 1.6e-52 209.5 141 79.4
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 2.1e-52 209.1 141 80.1
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 2.1e-52 209.1 141 80.1
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 2.1e-52 209.1 141 80.1
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 2.1e-52 209.1 142 80.3
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 2.1e-52 209.1 141 80.1
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 2.1e-52 209.1 142 80.3
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 2.1e-52 209.1 141 80.1
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 2.1e-52 209.1 141 80.1
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 2.1e-52 209.1 141 76.6
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 2.1e-52 209.1 140 76.4
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 2.8e-52 208.8 142 80.3
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 3.6e-52 208.4 140 77.1
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 4.7e-52 208.0 141 78.7
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 4.7e-52 208.0 156 75.0
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 4.7e-52 208.0 140 78.6
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 6.1e-52 207.6 140 80.0
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 6.1e-52 207.6 137 77.4
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 1.0e-51 206.8 141 78.7
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 1.4e-51 206.5 141 78.7
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.4e-51 206.5 140 79.3
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 1.8e-51 206.1 141 78.7
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.8e-51 206.1 138 80.4
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 2.3e-51 205.7 141 78.0
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 2.3e-51 205.7 141 78.0
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 2.3e-51 205.7 141 78.0
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 2.3e-51 205.7 141 75.9
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 2.3e-51 205.7 145 79.3
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 2.3e-51 205.7 140 73.6
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 3.0e-51 205.3 141 78.0
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 3.0e-51 205.3 141 78.0
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 4.0e-51 204.9 142 78.9
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 4.0e-51 204.9 142 78.9
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 4.0e-51 204.9 142 77.5
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 5.2e-51 204.5 141 78.7
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 5.2e-51 204.5 141 78.7
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 5.2e-51 204.5 142 78.2
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 6.8e-51 204.1 142 78.9
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 6.8e-51 204.1 142 78.9
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 6.8e-51 204.1 141 79.4
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 6.8e-51 204.1 140 75.7
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 8.9e-51 203.8 142 77.5
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 1.2e-50 203.4 140 76.4
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 1.2e-50 203.4 140 78.6
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 1.5e-50 203.0 143 74.8
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 3.4e-50 201.8 141 75.2
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 4.4e-50 201.4 134 79.9
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 4.4e-50 201.4 141 76.6
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 7.5e-50 200.7 141 75.2
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.2e-49 199.1 145 76.6
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 2.9e-49 198.7 141 77.3
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 3.7e-49 198.4 139 71.9
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 3.7e-49 198.4 139 74.1
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 4.9e-49 198.0 140 73.6
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 6.4e-49 197.6 141 75.2
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 6.4e-49 197.6 140 74.3
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 8.3e-49 197.2 141 75.9
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 8.3e-49 197.2 135 77.0
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 1.1e-48 196.8 140 78.6
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 1.4e-48 196.4 141 73.8
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 4.1e-48 194.9 133 78.2
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 2.0e-47 192.6 140 72.9
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 2.0e-47 192.6 141 76.6
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 5.9e-47 191.0 141 70.9
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 5.9e-47 191.0 140 74.3
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 1.0e-46 190.3 142 73.2
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 1.0e-46 190.3 133 72.9
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 2.3e-46 189.1 136 72.1
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 3.0e-46 188.7 140 71.4
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 3.0e-46 188.7 139 71.2
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 6.6e-46 187.6 142 71.8
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 6.6e-46 187.6 139 71.9
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 6.6e-46 187.6 135 71.9
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.1e-45 186.8 136 70.6
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 1.1e-45 186.8 135 71.9
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 4.3e-45 184.9 139 70.5
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 1.6e-44 183.0 134 70.9
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 1.2e-42 176.8 142 69.7
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 9.8e-42 173.7 136 66.9
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 9.8e-42 173.7 140 70.7
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 1.7e-41 172.9 140 67.9
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 1.7e-41 172.9 140 67.9
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 3.7e-41 171.8 139 65.5
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 4.9e-41 171.4 109 79.8
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 9.2e-40 167.2 136 67.6
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 7.8e-39 164.1 161 62.7
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 1.0e-38 163.7 89 94.4
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 8.6e-38 160.6 141 61.7
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 1.1e-37 160.2 126 69.0
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 1.1e-37 160.2 140 62.9
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 7.3e-37 157.5 115 76.5
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 7.3e-37 157.5 155 63.2
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 3.6e-36 155.2 91 83.5
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 2.0e-34 149.4 138 58.7
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 1.7e-33 146.4 136 58.8
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 6.4e-33 144.4 135 61.5
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 1.2e-31 140.2 140 59.3
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 1.2e-31 140.2 134 59.7
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 2.1e-31 139.4 136 57.4
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 2.3e-30 136.0 90 80.0
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.1e-29 133.7 138 57.2
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 1.9e-29 132.9 138 55.1
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 3.3e-29 132.1 146 54.1
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.1e-27 127.1 120 60.8
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 3.1e-27 125.6 145 51.7
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 2.6e-26 122.5 90 74.4
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 5.8e-26 121.3 135 57.0
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 1.5e-21 106.7 53 94.3
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 9.6e-21 104.0 88 56.8
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 6.2e-20 101.3 141 49.6
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 6.8e-19 97.8 66 68.2
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 6.4e-17 91.3 137 43.1
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 4.2e-16 88.6 81 64.2
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 2.7e-15 85.9 73 63.0
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 9.3e-08 60.8 136 41.9


User provided reference genes

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