Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G005540 Citrullus lanatus HOM05D008835 ORTHO05D011094 8.2e-61 238.8 111 100.0
CsaV3_5G014350 Cucumis sativus L. HOM05D008835 ORTHO05D011094 2.3e-42 177.6 89 92.1
CANSAT01G3131 Cannabis sativa HOM05D008835 ORTHO05D011094 1.5e-33 148.3 113 60.2
Cc11_g07380 Coffea canephora HOM05D008835 ORTHO05D011094 1.6e-27 128.3 112 53.6
Cc11_g07320 Coffea canephora HOM05D008835 ORTHO05D011094 6.6e-26 122.9 112 51.8
Sc15g0000240 Simmondsia chinensis HOM05D008835 ORTHO05D011094 2.2e-21 107.8 112 47.3
CSS0047579 Camellia sinensis var. sinensis HOM05D008835 ORTHO05D011094 2.4e-20 104.4 111 48.6
Cpa.g.sc2.190 Carica papaya HOM05D008835 ORTHO05D011094 2.4e-20 104.4 113 44.2
Sed0018402 Sechium edule HOM05D008835 ORTHO05D011094 2.4e-20 104.4 56 85.7
AL5G10840 Arabidopsis lyrata HOM05D008835 ORTHO05D011094 1.2e-19 102.1 105 42.9
Thhalv10003932m.g Eutrema salsugineum HOM05D008835 ORTHO05D011094 2.1e-19 101.3 110 42.7
AT2G01740 Arabidopsis thaliana HOM05D008835 ORTHO05D011094 1.0e-18 99.0 110 40.0
Aa31LG2G8150 Aethionema arabicum HOM05D008835 ORTHO05D011094 5.1e-18 96.7 113 38.9
CARHR144310 Cardamine hirsuta HOM05D008835 ORTHO05D011094 2.5e-17 94.4 114 38.6
Sp2g13190 Schrenkiella parvula HOM05D008835 ORTHO05D011094 1.4e-15 88.6 105 39.0
Oeu044008.1 Olea europaea HOM05D008835 ORTHO05D011094 5.8e-14 83.2 70 54.3
Gohir.A01G146600 Gossypium hirsutum HOM05D008835 ORTHO05D011094 2.2e-13 81.3 51 66.7
Gohir.D01G139800 Gossypium hirsutum HOM05D008835 ORTHO05D011094 2.2e-13 81.3 51 66.7
Gorai.002G171900 Gossypium raimondii HOM05D008835 ORTHO05D011094 2.2e-13 81.3 51 66.7
Actinidia34037 Actinidia chinensis HOM05D008835 ORTHO05D011094 1.9e-12 78.2 51 60.8
C09p30430 Brassica napus HOM05D008835 ORTHO05D011094 9.2e-12 75.9 115 34.8
BolC9t55906H Brassica oleracea HOM05D008835 ORTHO05D011094 1.2e-11 75.5 115 34.8
Prupe.1G333800 Prunus persica HOM05D008835 ORTHO05D011094 3.5e-11 73.9 53 62.3
BcaC04g21553 Brassica carinata HOM05D008835 ORTHO05D011094 7.8e-11 72.8 115 33.9
Dinv10471 Davidia involucrata HOM05D008835 ORTHO05D011094 3.0e-10 70.9 54 57.4
RcHm_v2.0_Chr4g0443001 Rosa chinensis HOM05D008835 ORTHO05D011094 1.1e-09 68.9 50 56.0
BraA09t37964Z Brassica rapa HOM05D008835 ORTHO05D011094 2.8e-08 64.3 115 31.3
EL10Ac7g17347 Beta vulgaris HOM05D000855 ORTHO05D008530 1.4e-07 62.0 108 33.3
A09p23600 Brassica napus HOM05D008835 ORTHO05D011094 1.4e-07 62.0 115 30.4
MBI12_g09300_MAGBIO Magnolia biondii HOM05D000855 ORTHO05D008530 2.4e-07 61.2 109 33.0
Nn2g12986 Nelumbo nucifera HOM05D000855 ORTHO05D008530 3.1e-07 60.8 109 33.0
Actinidia14742 Actinidia chinensis HOM05D008483 ORTHO05D018225 4.0e-07 60.5 116 31.0
Migut.J00415 Erythranthe guttata HOM05D000855 ORTHO05D008530 4.0e-07 60.5 109 32.1
FAN02G3427 Fragaria x ananassa HOM05D000855 ORTHO05D008530 4.0e-07 60.5 108 33.3
Hma1.2p1_0111F.1_g053850 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 6.9e-07 59.7 109 32.1
Hma1.2p1_0111F.1_g053860 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 6.9e-07 59.7 109 32.1
Manes.08G003100 Manihot esculenta HOM05D000855 ORTHO05D008530 6.9e-07 59.7 109 33.9
AUR62040505 Chenopodium quinoa HOM05D000855 ORTHO05D008530 9.0e-07 59.3 109 31.2
AUR62042604 Chenopodium quinoa HOM05D000855 ORTHO05D008530 9.0e-07 59.3 109 31.2
PSO339G3775 Papaver somniferum HOM05D000855 ORTHO05D008530 9.0e-07 59.3 109 33.0
Potri.016G085300 Populus trichocarpa HOM05D000855 ORTHO05D008530 1.2e-06 58.9 109 32.1
SGA_v2.0_scaffold4G01915 Striga asiatica HOM05D002890 ORTHO05D009847 1.2e-06 58.9 106 29.2
HPP92_004249 Vanilla planifolia HOM05D008835 ORTHO05D011094 1.2e-06 58.9 66 40.9
Actinidia04698 Actinidia chinensis HOM05D000855 ORTHO05D008530 1.5e-06 58.5 109 32.1
GSVIVG01025536001 Vitis vinifera HOM05D000855 ORTHO05D008530 1.5e-06 58.5 109 33.9
Ciclev10011148m.g Citrus clementina HOM05D000855 ORTHO05D008530 2.0e-06 58.2 109 30.3
FvH4_6g15290 Fragaria vesca HOM05D000855 ORTHO05D008530 2.0e-06 58.2 108 32.4
Thecc.05G053600 Theobroma cacao HOM05D000855 ORTHO05D008530 2.6e-06 57.8 109 30.3
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 3.4e-06 57.4 108 31.5
CSS0013853 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D008530 4.4e-06 57.0 109 31.2
CSS0023086 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D008530 4.4e-06 57.0 109 31.2
FAN09G2418 Fragaria x ananassa HOM05D000855 ORTHO05D008530 4.4e-06 57.0 108 32.4
FAN14G2211 Fragaria x ananassa HOM05D000855 ORTHO05D008530 4.4e-06 57.0 108 32.4
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 4.4e-06 57.0 109 32.1
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 5.8e-06 56.6 109 31.2
Lj5g0021887 Lotus japonicus HOM05D000855 ORTHO05D008530 5.8e-06 56.6 108 32.4
QL07p045308 Quercus lobata HOM05D000855 ORTHO05D008530 5.8e-06 56.6 108 31.5
Aqoxy4G03187 Aquilegia oxysepala HOM05D000855 ORTHO05D008530 7.6e-06 56.2 109 33.0
AT3G09650 Arabidopsis thaliana HOM05D000855 ORTHO05D008530 7.6e-06 56.2 108 30.6
ClCG10G020580 Citrullus lanatus HOM05D001673 ORTHO05D002312 7.6e-06 56.2 108 31.5
Dinv35708 Davidia involucrata HOM05D000855 ORTHO05D008530 7.6e-06 56.2 109 32.1
MSTRG.19138 Avicennia marina HOM05D000855 ORTHO05D008530 9.9e-06 55.8 109 31.2
Dinv32521 Davidia involucrata HOM05D003900 ORTHO05D005009 9.9e-06 55.8 120 32.5
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 9.9e-06 55.8 107 31.8
SalBow3G1200 Salvia bowleyana HOM05D000855 ORTHO05D008530 9.9e-06 55.8 109 31.2
SalBow3G1712 Salvia bowleyana HOM05D000855 ORTHO05D008530 9.9e-06 55.8 109 31.2


User provided reference genes

Program Settings