Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.4e-193 679.5 360 100.0
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 3.1e-188 661.8 360 97.2
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 3.1e-188 661.8 360 97.2
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 5.8e-179 630.9 360 92.5
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 1.4e-177 626.3 360 91.7
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 2.3e-159 565.8 357 83.2
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 2.3e-135 486.1 365 69.9
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 8.8e-135 484.2 362 71.3
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 9.7e-134 480.7 366 71.0
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 5.3e-132 474.9 367 70.3
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 1.2e-131 473.8 367 70.6
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 3.8e-130 468.8 382 67.3
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 5.0e-130 468.4 365 69.3
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 8.5e-130 467.6 363 68.0
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 4.2e-129 465.3 366 68.9
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 9.4e-129 464.2 367 69.2
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 1.2e-128 463.8 361 69.0
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 4.7e-128 461.8 362 68.5
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 8.0e-128 461.1 359 67.4
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 2.3e-127 459.5 362 68.0
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 1.2e-126 457.2 385 65.7
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 1.2e-126 457.2 364 65.9
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 3.4e-126 455.7 367 67.3
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 3.4e-126 455.7 382 65.7
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 4.4e-126 455.3 355 67.3
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 1.7e-125 453.4 363 65.6
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.2e-125 453.0 364 66.5
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 4.8e-125 451.8 362 68.0
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 8.3e-125 451.1 360 67.5
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 1.1e-124 450.7 361 66.2
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 1.8e-124 449.9 358 66.2
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 9.1e-124 447.6 355 69.0
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 2.0e-123 446.4 371 64.4
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 2.0e-123 446.4 367 67.0
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 7.7e-123 444.5 366 66.1
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 7.7e-123 444.5 372 68.3
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 7.7e-123 444.5 371 66.0
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 7.7e-123 444.5 358 66.2
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 2.2e-122 443.0 363 65.6
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 2.9e-122 442.6 357 65.8
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 3.8e-122 442.2 366 65.8
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 3.8e-122 442.2 364 65.9
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 3.8e-122 442.2 361 66.5
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 6.5e-122 441.4 358 66.2
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 6.5e-122 441.4 366 64.8
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 1.1e-121 440.7 363 64.2
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.1e-121 440.7 381 63.0
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 1.5e-121 440.3 366 65.3
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 2.5e-121 439.5 367 64.3
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 2.5e-121 439.5 365 64.9
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 4.2e-121 438.7 360 66.9
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 4.2e-121 438.7 381 62.7
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 3.6e-120 435.6 367 64.0
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 1.0e-119 434.1 369 66.1
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 1.4e-119 433.7 364 64.8
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 3.0e-119 432.6 363 64.2
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 7.5e-118 427.9 367 65.1
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 7.5e-118 427.9 395 60.8
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 1.3e-117 427.2 364 64.6
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 8.3e-117 424.5 363 64.5
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.4e-116 423.7 363 64.5
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 1.8e-116 423.3 365 63.8
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 1.8e-116 423.3 362 61.6
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 3.1e-116 422.5 367 63.2
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 3.1e-116 422.5 363 64.2
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 9.1e-116 421.0 370 61.4
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 2.3e-114 416.4 380 62.1
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 5.0e-114 415.2 363 63.4
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 5.0e-114 415.2 378 60.8
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 6.6e-114 414.8 378 61.1
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 3.3e-113 412.5 365 61.9
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 7.2e-113 411.4 366 65.0
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 8.0e-112 407.9 379 62.3
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 4.0e-111 405.6 430 54.9
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 1.3e-109 400.6 388 59.8
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 7.0e-108 394.8 340 64.7
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 1.6e-107 393.7 368 59.8
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 4.6e-107 392.1 362 59.9
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 5.0e-106 388.7 372 59.1
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 5.6e-105 385.2 363 59.2
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 1.0e-103 380.9 393 57.0
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 1.8e-103 380.2 384 58.3
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 1.8e-103 380.2 369 61.0
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 5.2e-103 378.6 366 59.8
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 6.8e-103 378.3 371 61.2
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 8.9e-103 377.9 365 58.9
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 1.2e-102 377.5 365 58.6
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 4.4e-102 375.6 385 59.2
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 1.3e-101 374.0 431 53.4
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 1.7e-101 373.6 366 58.2
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.6e-99 367.1 344 59.6
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 1.6e-99 367.1 369 59.3
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 7.8e-99 364.8 362 56.6
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 1.0e-98 364.4 362 56.1
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 2.5e-97 359.8 343 59.2
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 5.6e-97 358.6 386 57.5
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 2.1e-96 356.7 366 56.8
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 3.6e-96 355.9 367 56.7
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 8.1e-96 354.8 364 56.9
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 8.1e-96 354.8 372 54.3
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 4.0e-95 352.4 385 55.1
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 6.8e-95 351.7 382 55.2
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 6.8e-95 351.7 382 55.2
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 9.8e-94 347.8 370 56.2
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 1.9e-92 343.6 365 55.9
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 3.0e-90 336.3 383 54.8
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 2.5e-89 333.2 381 54.3
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 2.5e-89 333.2 381 54.3
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 3.6e-88 329.3 356 52.2
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 6.2e-88 328.6 383 54.6
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 2.3e-87 326.6 379 53.6
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 2.0e-86 323.6 383 53.0
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 4.4e-86 322.4 382 52.6
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 6.6e-74 282.0 309 55.0
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 6.6e-74 282.0 390 43.1
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 1.7e-69 267.3 242 62.8
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 2.9e-69 266.5 359 49.0
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 9.3e-68 261.5 237 61.6
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.8e-63 247.3 187 67.9
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 3.4e-62 243.0 350 42.6
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 7.6e-62 241.9 300 50.7
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 1.4e-55 221.1 438 35.6
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 2.5e-52 210.3 260 49.2
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 9.6e-49 198.4 224 52.2
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 7.6e-46 188.7 363 35.3
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 3.4e-38 163.3 153 60.8
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 4.5e-38 162.9 119 66.4
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 5.9e-38 162.5 124 66.9
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 6.7e-18 95.9 232 27.2
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 1.5e-17 94.7 394 26.4
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 2.0e-17 94.4 70 65.7
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 3.3e-17 93.6 115 46.1
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 1.7e-16 91.3 117 48.7
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 1.1e-15 88.6 56 78.6
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 5.9e-14 82.8 510 24.3
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 5.9e-14 82.8 56 71.4
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 1.9e-12 77.8 50 76.0
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea HOM05D002744 ORTHO05D006546 4.2e-12 76.6 59 67.8
arahy.Tifrunner.gnm1.ann1.WF3XAB Arachis hypogaea HOM05D002744 ORTHO05D006546 5.5e-12 76.3 61 65.6
arahy.Tifrunner.gnm1.ann1.XR4RRM Arachis hypogaea HOM05D002744 ORTHO05D006546 1.2e-11 75.1 61 65.6
arahy.Tifrunner.gnm1.ann1.U77MTX Arachis hypogaea HOM05D002744 ORTHO05D006546 1.0e-10 72.0 60 63.3
Cfa025636 Carpinus fangiana HOM05D002744 ORTHO05D006546 1.5e-09 68.2 410 25.4


User provided reference genes

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