Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 0.0e+00 3668.6 1820 100.0
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 0.0e+00 3534.2 1824 96.2
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 0.0e+00 3525.7 1824 95.9
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 0.0e+00 3404.4 1825 92.8
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 0.0e+00 2682.1 1826 72.9
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 0.0e+00 2668.3 1830 72.2
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 0.0e+00 2667.1 1935 69.9
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 0.0e+00 2633.2 1842 71.0
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 0.0e+00 2624.0 1796 72.6
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 0.0e+00 2616.6 1849 70.8
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 0.0e+00 2607.0 1835 70.8
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2607.0 1831 71.2
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 0.0e+00 2604.7 1925 67.6
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 0.0e+00 2601.6 1830 70.8
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2592.8 1841 70.3
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 0.0e+00 2586.2 1830 70.5
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2582.4 1853 69.8
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 0.0e+00 2579.3 1833 70.4
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 0.0e+00 2572.3 1828 70.0
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2572.0 1828 70.0
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2565.4 1888 68.5
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 0.0e+00 2558.9 1826 69.3
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 0.0e+00 2540.4 1827 69.1
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 0.0e+00 2516.5 1896 68.0
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 0.0e+00 2499.2 1965 65.2
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 0.0e+00 2498.4 1824 68.0
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 0.0e+00 2496.5 1823 68.5
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 0.0e+00 2494.5 1823 68.1
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 2492.2 1834 67.9
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 0.0e+00 2491.1 1827 67.8
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 0.0e+00 2490.7 1823 68.1
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 2483.8 1821 67.8
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 2472.6 1828 67.7
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 0.0e+00 2466.4 1821 67.3
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 0.0e+00 2463.7 1837 67.1
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 2461.8 1867 66.5
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 0.0e+00 2439.1 1950 63.8
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 2434.1 1826 67.0
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 0.0e+00 2434.1 1944 63.5
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 0.0e+00 2419.0 1826 67.0
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 0.0e+00 2417.5 1823 66.9
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 0.0e+00 2416.3 1699 70.5
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2364.0 1826 64.9
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 0.0e+00 2362.0 1827 63.9
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2361.6 1826 64.7
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 0.0e+00 2360.5 1835 64.6
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 0.0e+00 2350.1 1826 64.5
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2342.4 1822 64.3
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 0.0e+00 2325.4 1830 63.8
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 0.0e+00 2324.7 1830 63.8
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 0.0e+00 2317.0 1816 64.2
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 0.0e+00 2307.3 1820 63.1
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 0.0e+00 2299.2 1827 63.2
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 2280.4 1820 63.4
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 0.0e+00 2277.3 1828 64.1
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 0.0e+00 2271.5 1734 65.3
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2257.3 1595 70.3
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 0.0e+00 2257.3 1827 62.2
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 2248.8 1829 62.8
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 0.0e+00 2243.8 1826 61.9
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 0.0e+00 2238.0 1831 61.4
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 0.0e+00 2234.5 1836 61.8
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 0.0e+00 2226.1 1722 65.4
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 0.0e+00 2225.7 1700 65.5
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 2223.4 1827 61.5
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2216.4 1841 61.2
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 2216.0 1947 58.4
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 2204.1 1833 60.9
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 0.0e+00 2188.7 1827 61.2
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 2177.5 1868 60.1
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2171.4 1833 60.3
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2167.9 1847 60.5
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 2167.5 1828 60.6
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 2163.3 1859 59.7
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 0.0e+00 2154.0 1847 60.2
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 2132.5 1861 59.4
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 0.0e+00 2111.6 1858 58.4
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 0.0e+00 2097.0 1840 58.0
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 0.0e+00 2077.8 1837 58.6
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 0.0e+00 2068.1 1856 58.7
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 0.0e+00 2058.9 1451 70.7
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 2055.4 1751 61.1
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 0.0e+00 2037.7 1841 58.0
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 0.0e+00 1953.7 1471 67.0
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1813.5 1517 61.3
FAN03G1412 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1775.4 1207 73.4
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 0.0e+00 1710.7 1226 68.7
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 0.0e+00 1687.2 1327 64.0
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 0.0e+00 1627.5 1749 50.8
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 0.0e+00 1580.1 1412 58.2
CiPaw.01G300000 Carya illinoinensis HOM05D003492 ORTHO05D005115 0.0e+00 1520.4 970 78.8
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 0.0e+00 1458.7 1951 42.8
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 0.0e+00 1431.0 1941 41.8
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 0.0e+00 1399.8 1781 44.3
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 1387.5 1051 65.7
Nitab4.5_0011089g0010 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 1333.9 1352 55.3
Os05g0354300 Oryza sativa ssp. japonica HOM05D003492 ORTHO05D005115 0.0e+00 1222.6 933 65.0
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 0.0e+00 1194.1 1856 39.4
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 0.0e+00 1174.1 1151 55.7
HPP92_012039 Vanilla planifolia HOM05D003492 ORTHO05D005115 0.0e+00 1172.5 903 63.3
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 0.0e+00 1152.1 1221 51.1
Peaxi162Scf00284g00913 Petunia axillaris HOM05D003492 ORTHO05D005115 0.0e+00 1130.9 786 71.5
Lj8C65G6 Lonicera japonica HOM05D003492 ORTHO05D005115 0.0e+00 1078.5 918 62.5
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 1.7e-295 1020.4 2187 33.5
Peaxi162Scf00284g00912 Petunia axillaris HOM05D003492 ORTHO05D005115 3.7e-290 1002.7 910 56.7
CAN.G78.68 Capsicum annuum HOM05D003492 ORTHO05D005115 6.9e-252 875.5 816 54.9
CiPaw.01G300100 Carya illinoinensis HOM05D003492 ORTHO05D005115 9.3e-233 812.0 634 64.5
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 2.1e-232 810.8 721 56.2
SMO105G0008 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 1.2e-227 795.0 860 49.8
Actinidia13944 Actinidia chinensis HOM05D003492 ORTHO05D005115 5.1e-215 753.1 516 71.1
FAN03G1608 Fragaria x ananassa HOM05D003492 ORTHO05D005115 1.5e-214 751.5 625 61.0
CAN.G1193.3 Capsicum annuum HOM05D003492 ORTHO05D005115 1.1e-204 718.8 516 68.8
SHI03328 Sapria himalayana HOM05D003492 ORTHO05D005115 1.9e-201 708.0 512 68.4
CDE12G0028 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 1.2e-182 645.6 1077 37.7
SEGI_27844 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 1.2e-179 635.6 518 59.5
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.1e-177 629.0 900 44.6
Rhsim10G0095300 Rhododendron simsii HOM05D003492 ORTHO05D005115 9.5e-177 625.9 565 60.5
MCO04G065 Micromonas commoda HOM05D003492 ORTHO05D005115 9.2e-172 609.4 881 41.3
SEGI_00595 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 4.3e-153 547.4 723 43.3
Cc02_g06300 Coffea canephora HOM05D003492 ORTHO05D005115 2.2e-149 535.0 399 64.9
SHI03332 Sapria himalayana HOM05D003492 ORTHO05D005115 2.2e-149 535.0 432 63.0
Hund29345 Selenicereus undatus HOM05D003492 ORTHO05D005115 1.6e-131 475.7 533 46.7
CAN.G78.71 Capsicum annuum HOM05D003492 ORTHO05D005115 1.0e-130 473.0 327 70.6
CAN.G1782.1 Capsicum annuum HOM05D003492 ORTHO05D005115 1.1e-129 469.5 439 54.4
Hund28567 Selenicereus undatus HOM05D003492 ORTHO05D005115 1.9e-124 452.2 512 46.5
Lj8A65G43 Lonicera japonica HOM05D003492 ORTHO05D005115 6.9e-119 433.7 308 68.5
SalBow5G5368 Salvia bowleyana HOM05D003492 ORTHO05D005115 1.7e-117 429.1 373 58.4
TAR623G0911 Trochodendron aralioides HOM05D003492 ORTHO05D005115 1.1e-116 426.4 311 65.6
Hma1.2p1_0235F.1_g098570 Hydrangea macrophylla HOM05D003492 ORTHO05D005115 5.3e-111 407.5 347 58.8
Cre13.g579100 Chlamydomonas reinhardtii HOM05D003492 ORTHO05D005115 3.5e-107 394.8 843 33.5
Ca_30996_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 3.3e-105 388.3 311 61.7
Nitab4.5_0011089g0020 Nicotiana tabacum HOM05D003492 ORTHO05D005115 2.4e-103 382.1 396 52.3
Gorai.011G292700 Gossypium raimondii HOM05D003492 ORTHO05D005115 9.0e-103 380.2 254 74.8
HPP92_012038 Vanilla planifolia HOM05D003492 ORTHO05D005115 4.5e-102 377.9 398 51.3
Actinidia35642 Actinidia chinensis HOM05D003492 ORTHO05D005115 7.7e-102 377.1 386 55.7
Cfa022850 Carpinus fangiana HOM05D003492 ORTHO05D005115 5.3e-87 327.8 813 30.3
CAN.G78.70 Capsicum annuum HOM05D003492 ORTHO05D005115 1.7e-85 322.8 186 84.9
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 6.7e-82 310.8 424 43.2
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 6.1e-75 287.7 384 42.7
Lj8A65T41 Lonicera japonica HOM05D003492 ORTHO05D005115 3.3e-60 238.8 164 69.5
Psat1g148680 Pisum sativum HOM05D003492 ORTHO05D024801 1.9e-47 196.4 132 70.5
HPP92_012036 Vanilla planifolia HOM05D003492 ORTHO05D005115 3.2e-47 195.7 233 45.1
Psat7g005400 Pisum sativum HOM05D003492 ORTHO05D024801 3.3e-44 185.7 186 52.7
Duzib114G0096 Durio zibethinus HOM05D003492 ORTHO05D005115 1.2e-38 167.2 126 64.3
SHI03327 Sapria himalayana HOM05D003492 ORTHO05D000001 5.1e-37 161.8 454 28.6
Cc02_g06290 Coffea canephora HOM05D003492 ORTHO05D005115 1.1e-36 160.6 101 73.3
Thhalv10015394m.g Eutrema salsugineum HOM05D003492 ORTHO05D035223 5.6e-36 158.3 143 60.8
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 7.3e-36 157.9 226 38.1
Psat2g065680 Pisum sativum HOM05D003492 ORTHO05D005115 4.7e-35 155.2 122 61.5
Lj8C65T9 Lonicera japonica HOM05D003492 ORTHO05D019467 8.9e-34 151.0 130 59.2
SEGI_23081 Sequoiadendron giganteum HOM05D003492 ORTHO05D019467 3.4e-33 149.1 222 37.4
MBI08_g18764_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 1.9e-31 143.3 170 47.6
CAN.G78.72 Capsicum annuum HOM05D003492 ORTHO05D019467 1.6e-30 140.2 162 45.7
HPP92_012037 Vanilla planifolia HOM05D003492 ORTHO05D005115 6.0e-30 138.3 155 47.7
CAN.G78.73 Capsicum annuum HOM05D003492 ORTHO05D005115 1.1e-28 134.0 300 31.3
Lsat_1_v5_gn_4_75100 Lactuca sativa HOM05D003492 ORTHO05D016080 3.3e-28 132.5 99 63.6
Lsat_1_v5_gn_1_82880 Lactuca sativa HOM05D003492 ORTHO05D005115 1.4e-26 127.1 109 63.3
Rhsim10G0095400 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.4e-26 127.1 103 62.1
Actinidia00955 Actinidia chinensis HOM05D003492 ORTHO05D019467 1.8e-26 126.7 108 60.2
SEGI_03313 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 2.6e-25 122.9 218 35.3
Psat7g097320 Pisum sativum HOM05D003492 ORTHO05D024801 4.4e-25 122.1 102 58.8
MBI12_g24829_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D011152 7.6e-25 121.3 178 42.7
SHI03333 Sapria himalayana HOM05D003492 ORTHO05D005115 6.4e-24 118.2 181 40.3
CAN.G1193.2 Capsicum annuum HOM05D003492 ORTHO05D019467 4.2e-23 115.5 127 47.2
SHI03336 Sapria himalayana HOM05D003492 ORTHO05D005115 2.1e-22 113.2 141 43.3
Actinidia03517 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.5e-20 107.1 54 81.5
BcaB01g05927 Brassica carinata HOM05D003492 ORTHO05D016080 3.3e-20 105.9 122 50.8
Lsat_1_v5_gn_9_80501 Lactuca sativa HOM05D003662 ORTHO05D001824 8.1e-19 101.3 144 48.6
Lj8A65T40 Lonicera japonica HOM05D003492 ORTHO05D005115 3.1e-18 99.4 74 62.2
DCAR_011824 Daucus carota HOM05D003492 ORTHO05D005115 1.2e-17 97.4 76 61.8
Lsat_1_v5_gn_7_99341 Lactuca sativa HOM05D003492 ORTHO05D016080 2.6e-17 96.3 141 41.1
Psat4g081200 Pisum sativum HOM05D003492 ORTHO05D000696 3.4e-17 95.9 94 47.9
SHI03335 Sapria himalayana HOM05D003492 ORTHO05D005115 2.2e-16 93.2 86 50.0
CAN.G78.69 Capsicum annuum HOM05D003492 ORTHO05D024801 1.9e-15 90.1 71 63.4
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 2.1e-14 86.7 86 48.8
GSVIVG01034775001 Vitis vinifera HOM05D003492 ORTHO05D035223 5.6e-12 78.6 57 75.4
Actinidia02211 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.3e-11 77.4 102 44.1
Potri.010G187201 Populus trichocarpa HOM05D003492 ORTHO05D019467 2.8e-11 76.3 62 56.5
Sabra10G0144400 Salix brachista HOM05D003492 ORTHO05D019467 1.3e-08 67.4 129 36.4
MBI18_g01105_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 1.7e-08 67.0 61 59.0
SHI03338 Sapria himalayana HOM05D003492 ORTHO05D005115 1.7e-08 67.0 71 46.5
CAN.G3101.1 Capsicum annuum HOM05D003492 ORTHO05D005115 1.9e-07 63.5 71 49.3
HanXRQChr15g0464841 Helianthus annuus HOM05D003492 ORTHO05D005115 5.5e-07 62.0 75 49.3


User provided reference genes

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