Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G001620 Citrullus lanatus HOM05D006778 ORTHO05D008341 6.1e-97 357.5 176 100.0
CsaV3_6G036140 Cucumis sativus L. HOM05D006778 ORTHO05D008341 6.6e-59 231.1 133 85.0
MELO3C026499.2 Cucumis melo HOM05D006778 ORTHO05D008341 9.5e-58 227.3 133 84.2
Sed0012724 Sechium edule HOM05D006778 ORTHO05D008341 8.9e-56 220.7 133 81.2
Manes.12G043800 Manihot esculenta HOM05D006778 ORTHO05D008341 5.2e-40 168.3 132 64.4
Prupe.8G209000 Prunus persica HOM05D006778 ORTHO05D008341 1.5e-39 166.8 133 63.2
Glyma.13G130200 Glycine max HOM05D006778 ORTHO05D008341 1.7e-38 163.3 133 59.4
SGA_v2.0_scaffold8G04666 Striga asiatica HOM05D006778 ORTHO05D008341 2.2e-38 162.9 133 60.2
FAN15G2222 Fragaria x ananassa HOM05D006778 ORTHO05D008341 2.9e-38 162.5 131 61.8
Glyma.10G042900 Glycine max HOM05D006778 ORTHO05D008341 2.9e-38 162.5 131 61.8
Sabra02G0191900 Salix brachista HOM05D006778 ORTHO05D008341 8.3e-38 161.0 134 64.2
RcHm_v2.0_Chr6g0285481 Rosa chinensis HOM05D006778 ORTHO05D008341 1.1e-37 160.6 141 60.3
Actinidia37573 Actinidia chinensis HOM05D006778 ORTHO05D008341 1.9e-37 159.8 131 61.8
Rhsim13G0042100 Rhododendron simsii HOM05D006778 ORTHO05D008341 3.2e-37 159.1 139 60.4
CiPaw.03G152900 Carya illinoinensis HOM05D006778 ORTHO05D008341 5.4e-37 158.3 131 62.6
Cfa002523 Carpinus fangiana HOM05D006778 ORTHO05D008341 9.2e-37 157.5 126 62.7
Cc01_g17420 Coffea canephora HOM05D006778 ORTHO05D008341 2.1e-36 156.4 134 59.7
FvH4_2g19780 Fragaria vesca HOM05D006778 ORTHO05D008341 2.7e-36 156.0 144 55.6
Lj3g0024250 Lotus japonicus HOM05D006778 ORTHO05D008341 6.0e-36 154.8 129 61.2
Lj5g0022938 Lotus japonicus HOM05D006778 ORTHO05D008341 3.0e-35 152.5 131 60.3
arahy.Tifrunner.gnm1.ann1.01AYHN Arachis hypogaea HOM05D006778 ORTHO05D008341 5.1e-35 151.8 132 55.3
arahy.Tifrunner.gnm1.ann1.PE83GC Arachis hypogaea HOM05D006778 ORTHO05D008341 6.6e-35 151.4 136 54.4
Lalb_Chr21g0314231 Lupinus albus HOM05D006778 ORTHO05D008341 6.6e-35 151.4 137 56.2
GSVIVG01028519001 Vitis vinifera HOM05D006778 ORTHO05D008341 6.6e-35 151.4 131 61.1
Migut.D00505 Erythranthe guttata HOM05D006778 ORTHO05D008341 8.6e-35 151.0 134 54.5
MD05G1182200 Malus domestica HOM05D006778 ORTHO05D008341 1.1e-34 150.6 133 60.9
CAN.G941.43 Capsicum annuum HOM05D006778 ORTHO05D008341 1.5e-34 150.2 133 59.4
Potri.002G252700 Populus trichocarpa HOM05D006778 ORTHO05D008341 1.5e-34 150.2 129 62.0
CiPaw.04G108200 Carya illinoinensis HOM05D006778 ORTHO05D008341 3.3e-34 149.1 160 50.6
Nitab4.5_0003180g0010 Nicotiana tabacum HOM05D006778 ORTHO05D008341 3.3e-34 149.1 136 55.1
QL07p037469 Quercus lobata HOM05D006778 ORTHO05D008341 5.6e-34 148.3 171 50.3
Phvul.007G156300 Phaseolus vulgaris HOM05D006778 ORTHO05D008341 7.3e-34 147.9 131 58.8
Nitab4.5_0001740g0070 Nicotiana tabacum HOM05D006778 ORTHO05D008341 1.2e-33 147.1 136 55.9
TAR362G0656 Trochodendron aralioides HOM05D006778 ORTHO05D008341 1.2e-33 147.1 129 60.5
CANSAT01G2408 Cannabis sativa HOM05D006778 ORTHO05D008341 6.2e-33 144.8 150 52.0
CANSAT01G3118 Cannabis sativa HOM05D006778 ORTHO05D008341 6.2e-33 144.8 150 50.7
THA.LOC104820057 Tarenaya hassleriana HOM05D006778 ORTHO05D008341 8.1e-33 144.4 132 55.3
FAN24G1005 Fragaria x ananassa HOM05D006778 ORTHO05D008341 1.4e-32 143.7 146 52.1
Solyc06g008020.3 Solanum lycopersicum HOM05D006778 ORTHO05D008341 4.0e-32 142.1 139 55.4
ECA247G0226 Erigeron canadensis HOM05D000070 ORTHO05D003190 6.8e-32 141.4 130 56.2
Psat6g064720 Pisum sativum HOM05D006778 ORTHO05D008341 1.5e-31 140.2 146 50.0
Nn1g03098 Nelumbo nucifera HOM05D006778 ORTHO05D008341 7.6e-31 137.9 151 51.0
Medtr1g069150 Medicago truncatula HOM05D006778 ORTHO05D008341 2.9e-30 136.0 147 51.0
DCAR_012626 Daucus carota HOM05D006778 ORTHO05D008341 6.4e-30 134.8 145 50.3
PGR044G1830 Punica granatum HOM05D006778 ORTHO05D008341 6.4e-30 134.8 128 51.6
Sopen06g002860 Solanum pennellii HOM05D006778 ORTHO05D008341 8.4e-30 134.4 138 52.9
TPR.G33801 Trifolium pratense HOM05D006778 ORTHO05D008341 1.4e-29 133.7 144 51.4
vmacro02733 Vaccinium macrocarpon HOM05D006778 ORTHO05D008341 1.4e-29 133.7 161 48.4
EL10Ac7g17819 Beta vulgaris HOM05D006778 ORTHO05D008341 4.1e-29 132.1 141 47.5
AUR62031811 Chenopodium quinoa HOM05D006778 ORTHO05D008341 1.2e-28 130.6 164 43.3
Cpa.g.sc8.198 Carica papaya HOM05D006778 ORTHO05D008341 2.1e-28 129.8 128 53.9
Thecc.01G232400 Theobroma cacao HOM05D006778 ORTHO05D008341 3.5e-28 129.0 171 46.2
BcaNung01362 Brassica carinata HOM05D006778 ORTHO05D008341 6.0e-28 128.3 151 47.7
Gohir.D08G211201 Gossypium hirsutum HOM05D006778 ORTHO05D008341 6.0e-28 128.3 156 48.7
BcaC09g51658 Brassica carinata HOM05D006778 ORTHO05D008341 1.3e-27 127.1 152 47.4
Duzib133G1327 Durio zibethinus HOM05D006778 ORTHO05D008341 1.3e-27 127.1 170 43.5
Sed0026958 Sechium edule HOM05D006778 ORTHO05D008341 2.3e-27 126.3 79 82.3
Gohir.A08G193200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 3.9e-27 125.6 167 44.9
Gorai.004G223900 Gossypium raimondii HOM05D006778 ORTHO05D008341 5.1e-27 125.2 170 44.7
CARHR236610 Cardamine hirsuta HOM05D006778 ORTHO05D008341 6.6e-27 124.8 168 45.2
Thhalv10026155m.g Eutrema salsugineum HOM05D006778 ORTHO05D008341 6.6e-27 124.8 175 43.4
Sp7g26820 Schrenkiella parvula HOM05D006778 ORTHO05D008341 6.6e-27 124.8 152 48.7
PGR044G0410 Punica granatum HOM05D006778 ORTHO05D008341 2.5e-26 122.9 130 46.2
COL.COLO4_28579 Corchorus olitorius HOM05D006778 ORTHO05D008341 3.3e-26 122.5 156 45.5
ATR0787G018 Amborella trichopoda HOM05D006778 ORTHO05D008341 1.2e-25 120.6 136 50.0
Pp3c19_5220 Physcomitrium patens HOM05D006778 ORTHO05D008341 1.2e-25 120.6 133 48.9
Dinv19236 Davidia involucrata HOM05D006778 ORTHO05D008341 2.4e-24 116.3 135 45.9
TWI14G0487 Tripterygium wilfordii HOM05D006778 ORTHO05D008341 3.1e-24 115.9 184 41.8
HPP92_014070 Vanilla planifolia HOM05D006778 ORTHO05D008341 3.1e-24 115.9 136 47.8
AT4G28820 Arabidopsis thaliana HOM05D006778 ORTHO05D008341 6.9e-24 114.8 158 45.6
Carub.0007s1182 Capsella rubella HOM05D006778 ORTHO05D008341 9.0e-24 114.4 159 42.8
Mapoly0102s0014 Marchantia polymorpha HOM05D006778 ORTHO05D008341 1.2e-23 114.0 137 47.4
Aqoxy2G03836 Aquilegia oxysepala HOM05D006778 ORTHO05D008341 2.0e-23 113.2 130 46.2
Haze_24755 Corylus avellana HOM05D006778 ORTHO05D008341 1.3e-22 110.5 94 56.4
Haze_24757 Corylus avellana HOM05D006778 ORTHO05D008341 1.3e-22 110.5 94 56.4
CSS0042066 Camellia sinensis var. sinensis HOM05D006778 ORTHO05D008341 4.9e-22 108.6 144 46.5
CDE06G1811 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 1.1e-21 107.5 149 38.9
A01p09090 Brassica napus HOM05D006778 ORTHO05D008341 9.3e-21 104.4 163 41.7
BolC1t01026H Brassica oleracea HOM05D006778 ORTHO05D008341 2.1e-20 103.2 163 41.7
AL7G23670 Arabidopsis lyrata HOM05D006778 ORTHO05D008341 3.5e-20 102.4 186 38.2
CBR_g29688 Chara braunii HOM05D006778 ORTHO05D008341 1.3e-19 100.5 135 40.7
SMO111G0074 Selaginella moellendorffii HOM05D006778 ORTHO05D008341 1.3e-19 100.5 134 44.8
PGSC0003DMG400014691 Solanum tuberosum HOM05D006778 ORTHO05D008341 1.3e-19 100.5 141 45.4
MSTRG.18371 Avicennia marina HOM05D006778 ORTHO05D008341 3.0e-19 99.4 134 40.3
CDE07G0370 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 3.0e-19 99.4 130 40.8
Zm00001eb149030 Zea mays HOM05D006778 ORTHO05D008341 5.1e-19 98.6 131 41.2
C01p10640 Brassica napus HOM05D006778 ORTHO05D008341 1.1e-18 97.4 164 39.0
BraA01t00857Z Brassica rapa HOM05D006778 ORTHO05D008341 1.5e-18 97.1 165 36.4
BolC7t46124H Brassica oleracea HOM05D006778 ORTHO05D008341 9.6e-18 94.4 204 36.8
C07p56450 Brassica napus HOM05D006778 ORTHO05D008341 1.4e-16 90.5 204 35.8
Atru.chr5.1931 Acer truncatum HOM05D006778 ORTHO05D008341 4.0e-16 89.0 75 60.0
AUR62008897 Chenopodium quinoa HOM05D006778 ORTHO05D008341 9.0e-16 87.8 138 37.0
VMungo0720G2677 Vigna mungo HOM05D006778 ORTHO05D008341 9.0e-16 87.8 127 44.1
AagrBONN_evm.TU.Sc2ySwM_228.3325 Anthoceros agrestis HOM05D006778 ORTHO05D008341 2.6e-15 86.3 135 40.7
A03p58430 Brassica napus HOM05D006778 ORTHO05D008341 1.3e-14 84.0 201 34.3
Hma1.2p1_1858F.1_g305520 Hydrangea macrophylla HOM05D006778 ORTHO05D008341 1.4e-13 80.5 48 70.8
Actinidia30101 Actinidia chinensis HOM05D006778 ORTHO05D008341 2.4e-13 79.7 76 55.3
Lsat_1_v5_gn_9_11140 Lactuca sativa HOM05D006778 ORTHO05D008341 4.2e-13 79.0 97 47.4
MD10G1170500 Malus domestica HOM05D006778 ORTHO05D008341 4.2e-13 79.0 126 40.5
Ca_09622_v3 Cicer arietinum L. HOM05D006778 ORTHO05D008341 5.4e-13 78.6 108 45.4
Hund05528 Selenicereus undatus HOM05D006778 ORTHO05D008341 5.4e-13 78.6 124 42.7
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 7.1e-13 78.2 138 37.0
Aa31LG2G21570 Aethionema arabicum HOM05D006778 ORTHO05D008341 9.3e-13 77.8 189 33.3
Sc17g0002480 Simmondsia chinensis HOM05D006778 ORTHO05D008341 1.2e-12 77.4 95 46.3
Peaxi162Scf00499g00413 Petunia axillaris HOM05D006778 ORTHO05D008341 1.8e-11 73.6 99 41.4
AagrBONN_evm.TU.Sc2ySwM_368.1574 Anthoceros agrestis HOM05D006778 ORTHO05D008341 2.3e-11 73.2 110 40.0
unitig_749.g13722 Utricularia gibba HOM05D006778 ORTHO05D008341 3.7e-09 65.9 91 41.8
Gohir.A05G416601 Gossypium hirsutum HOM05D006778 ORTHO05D008341 8.1e-09 64.7 77 46.8
Gohir.A05G417001 Gossypium hirsutum HOM05D006778 ORTHO05D008341 8.1e-09 64.7 77 46.8
Gorai.012G000200 Gossypium raimondii HOM05D006778 ORTHO05D008341 8.1e-09 64.7 77 46.8
SEGI_27672 Sequoiadendron giganteum HOM05D006778 ORTHO05D008341 1.8e-08 63.5 57 61.4
Gohir.D08G007200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 2.4e-08 63.2 77 46.8
SalBow4G2567 Salvia bowleyana HOM05D006778 ORTHO05D008341 1.5e-07 60.5 52 61.5
MBI11_g20194_MAGBIO Magnolia biondii HOM05D006778 ORTHO05D008341 4.5e-07 58.9 54 55.6


User provided reference genes

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