Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 0.0e+00 1131.3 602 100.0
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 4.0e-265 917.9 620 82.1
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 5.8e-256 887.5 615 81.3
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 5.3e-201 704.9 623 67.1
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 6.6e-151 538.5 628 53.8
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 5.2e-148 528.9 633 51.0
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 7.5e-147 525.0 638 51.7
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 7.0e-145 518.5 627 49.8
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 1.2e-144 517.7 586 52.4
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 2.7e-144 516.5 660 52.6
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 8.6e-143 511.5 634 51.3
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 7.3e-142 508.4 635 50.7
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 3.6e-141 506.1 631 51.2
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 1.3e-138 497.7 665 47.5
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 1.9e-137 493.8 634 48.7
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 3.2e-137 493.0 645 48.4
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 1.9e-134 483.8 659 46.7
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.9e-134 483.8 569 51.3
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 1.2e-128 464.5 562 50.0
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 1.6e-128 464.2 629 45.2
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 5.1e-127 459.1 638 49.4
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 3.3e-126 456.4 615 48.0
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 8.9e-124 448.4 599 46.1
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 1.5e-123 447.6 552 51.6
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 2.0e-123 447.2 696 44.4
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 5.8e-123 445.7 669 44.8
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 3.8e-122 443.0 614 45.9
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.1e-121 441.4 671 44.7
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 1.9e-121 440.7 553 49.2
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 2.4e-121 440.3 566 47.2
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 2.4e-121 440.3 566 47.2
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 3.2e-121 439.9 676 43.5
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 3.2e-121 439.9 671 44.6
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 4.2e-121 439.5 652 43.9
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 7.1e-121 438.7 645 43.4
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 1.0e-119 434.9 584 45.4
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 2.3e-119 433.7 677 43.1
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 2.8e-117 426.8 613 44.9
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 3.6e-117 426.4 613 45.2
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 4.0e-116 422.9 668 42.5
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 4.0e-116 422.9 729 40.2
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 4.0e-116 422.9 768 39.8
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 5.3e-116 422.5 567 45.3
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 6.9e-116 422.2 714 44.8
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 1.5e-115 421.0 643 43.9
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 2.6e-115 420.2 604 46.7
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 2.2e-114 417.2 644 44.4
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 3.8e-114 416.4 643 43.9
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 3.8e-114 416.4 602 45.8
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 6.4e-114 415.6 669 43.0
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 2.7e-112 410.2 625 43.4
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 7.9e-112 408.7 664 40.8
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 7.9e-112 408.7 634 43.1
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 1.8e-111 407.5 666 40.8
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 3.0e-111 406.8 650 42.5
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 3.0e-111 406.8 760 38.3
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 3.9e-111 406.4 628 42.8
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 3.9e-111 406.4 642 43.0
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 1.1e-110 404.8 655 41.2
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 1.6e-109 401.0 571 43.8
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 2.1e-109 400.6 741 41.7
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 2.1e-109 400.6 752 37.9
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 6.2e-109 399.1 705 40.1
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 1.8e-108 397.5 714 38.8
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 6.9e-108 395.6 578 45.7
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 1.2e-107 394.8 605 42.8
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 9.9e-107 391.7 666 43.8
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 1.7e-106 391.0 605 42.8
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 1.1e-105 388.3 730 40.1
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 2.4e-105 387.1 677 40.2
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 1.6e-104 384.4 478 51.3
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 2.1e-104 384.0 630 41.3
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 7.9e-104 382.1 583 42.2
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 7.9e-104 382.1 716 37.6
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 8.7e-103 378.6 673 39.8
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 1.1e-102 378.3 448 54.2
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 2.1e-101 374.0 746 37.0
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 2.8e-101 373.6 533 43.0
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 4.8e-101 372.9 768 38.8
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 3.1e-100 370.2 719 39.6
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 4.0e-100 369.8 699 38.3
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 5.3e-100 369.4 605 42.6
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 1.2e-99 368.2 682 38.3
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 3.4e-99 366.7 662 39.9
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 4.5e-99 366.3 663 39.8
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.7e-98 364.4 635 41.3
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 8.4e-98 362.1 589 42.4
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 1.9e-97 360.9 714 37.7
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 2.5e-97 360.5 560 41.4
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 6.0e-96 355.9 670 39.0
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 3.0e-95 353.6 691 37.3
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 7.4e-94 349.0 705 41.0
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 2.8e-93 347.1 706 37.4
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 1.4e-92 344.7 914 31.7
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 7.9e-88 328.9 559 39.7
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 5.7e-86 322.8 474 45.1
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 1.1e-84 318.5 458 45.0
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 2.6e-83 313.9 733 33.4
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 1.9e-81 307.8 564 39.7
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 1.4e-79 301.6 276 60.1
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 5.3e-68 263.1 260 57.3
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 1.2e-67 261.9 243 58.8
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.6e-64 251.5 190 64.2
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 1.6e-56 224.9 723 31.5
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.0e-55 222.2 510 34.1
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 1.8e-55 221.5 247 52.2
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 2.3e-55 221.1 198 61.1
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 4.4e-54 216.9 510 34.3
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 1.7e-53 214.9 734 29.3
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 8.3e-53 212.6 183 60.1
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 1.2e-51 208.8 201 58.2
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 4.5e-51 206.8 565 31.3
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 9.5e-49 199.1 508 30.7
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 1.1e-41 175.6 244 48.4
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 3.3e-41 174.1 243 46.9
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.7e-37 161.8 125 65.6
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 6.4e-37 159.8 182 50.5
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 6.6e-34 149.8 200 43.0
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 1.6e-27 128.6 159 49.7
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 1.8e-23 115.2 173 39.9
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 1.5e-22 112.1 192 37.0
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 1.4e-20 105.5 185 39.5
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 1.4e-20 105.5 185 39.5
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 1.9e-20 105.1 328 30.2
CSS0026788 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 5.4e-20 103.6 101 55.4
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 1.6e-19 102.1 81 60.5
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 1.6e-16 92.0 236 31.8
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 6.2e-16 90.1 116 47.4
PSO063G6924 Papaver somniferum HOM05D005415 ORTHO05D006242 6.2e-16 90.1 148 37.2
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 1.5e-14 85.5 89 51.7
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 2.4e-12 78.2 49 75.5
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 2.1e-11 75.1 57 64.9
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 6.0e-11 73.6 93 48.4
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.1e-09 69.3 60 58.3
PSO017G3192 Papaver somniferum HOM05D005415 ORTHO05D006242 2.5e-09 68.2 74 50.0
Medtr1g071270 Medicago truncatula HOM05D005415 ORTHO05D006242 3.3e-09 67.8 109 38.5
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 4.3e-09 67.4 121 39.7
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 1.6e-08 65.5 103 39.8
PSO063G6394 Papaver somniferum HOM05D005415 ORTHO05D006242 3.6e-08 64.3 56 62.5
SEGI_12458 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 1.4e-07 62.4 76 32.9
Medtr1g069490 Medicago truncatula HOM05D000559 ORTHO05D000596 2.0e-06 58.5 57 52.6


User provided reference genes

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