Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G017810 Citrullus lanatus HOM05D004813 ORTHO05D005889 0.0e+00 1122.1 719 100.0
MELO3C026213.2 Cucumis melo HOM05D004813 ORTHO05D005889 3.1e-216 755.7 670 74.9
CsaV3_1G000640 Cucumis sativus L. HOM05D004813 ORTHO05D005889 3.7e-209 732.3 670 71.9
Sed0018710 Sechium edule HOM05D004813 ORTHO05D005889 2.0e-191 673.3 676 70.0
CSS0009747 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 1.3e-140 504.6 615 58.7
TAR629G2765 Trochodendron aralioides HOM05D004813 ORTHO05D005889 2.2e-137 493.8 608 57.2
CSS0044871 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 3.8e-137 493.0 615 57.6
Nn4g22713 Nelumbo nucifera HOM05D004813 ORTHO05D005889 4.9e-137 492.7 628 55.9
Dinv20637 Davidia involucrata HOM05D004813 ORTHO05D005889 8.4e-137 491.9 607 56.8
Cc04_g12130 Coffea canephora HOM05D004813 ORTHO05D005889 2.1e-135 487.3 615 56.9
Manes.14G064300 Manihot esculenta HOM05D004813 ORTHO05D005889 6.0e-135 485.7 604 54.5
Ciclev10019513m.g Citrus clementina HOM05D004813 ORTHO05D005889 9.6e-133 478.4 607 53.0
Cfa019150 Carpinus fangiana HOM05D004813 ORTHO05D005889 1.2e-130 471.5 602 49.3
Potri.012G082600 Populus trichocarpa HOM05D004813 ORTHO05D005889 2.0e-130 470.7 604 52.2
Cpa.g.sc76.31 Carica papaya HOM05D004813 ORTHO05D005889 1.7e-129 467.6 670 53.1
MD06G1172400 Malus domestica HOM05D004813 ORTHO05D005889 2.2e-129 467.2 611 56.5
Nitab4.5_0000514g0060 Nicotiana tabacum HOM05D004813 ORTHO05D005889 6.5e-129 465.7 626 54.6
QL10p010983 Quercus lobata HOM05D004813 ORTHO05D005889 1.9e-128 464.2 643 53.0
MD14G1178200 Malus domestica HOM05D004813 ORTHO05D005889 1.2e-127 461.5 609 54.7
TWI14G0980 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 1.2e-127 461.5 635 53.2
MBI16_g39216_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.6e-127 461.1 617 54.0
Eucgr.K02829 Eucalyptus grandis HOM05D004813 ORTHO05D005889 1.1e-125 454.9 647 54.3
MBI17_g17505_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 4.3e-125 453.0 615 56.7
vmacro16622 Vaccinium macrocarpon HOM05D004813 ORTHO05D005889 5.7e-125 452.6 636 52.2
Thecc.03G014500 Theobroma cacao HOM05D004813 ORTHO05D005889 9.7e-125 451.8 626 54.5
Haze_07517 Corylus avellana HOM05D004813 ORTHO05D005889 1.3e-124 451.4 617 53.2
CiPaw.11G024600 Carya illinoinensis HOM05D004813 ORTHO05D005889 1.6e-124 451.1 600 54.0
PGR044G0958 Punica granatum HOM05D004813 ORTHO05D005889 1.6e-124 451.1 613 55.8
MBI16_g37492_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 2.2e-124 450.7 615 56.6
Sabra15G0103000 Salix brachista HOM05D004813 ORTHO05D005889 4.1e-123 446.4 604 51.2
CANSAT80G1068 Cannabis sativa HOM05D004813 ORTHO05D005889 9.0e-123 445.3 609 56.5
Prupe.5G171700 Prunus persica HOM05D004813 ORTHO05D005889 9.0e-123 445.3 606 56.8
Gorai.008G296300 Gossypium raimondii HOM05D004813 ORTHO05D005889 4.5e-122 443.0 624 54.8
TWI23G0210 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 5.9e-122 442.6 664 51.8
Peaxi162Scf00089g01844 Petunia axillaris HOM05D004813 ORTHO05D005889 7.7e-122 442.2 637 51.6
Phvul.003G201700 Phaseolus vulgaris HOM05D004813 ORTHO05D005889 1.0e-121 441.8 620 51.3
arahy.Tifrunner.gnm1.ann1.J26J1M Arachis hypogaea HOM05D004813 ORTHO05D005889 2.2e-121 440.7 617 53.3
Gohir.D12G275800 Gossypium hirsutum HOM05D004813 ORTHO05D005889 2.2e-121 440.7 637 53.1
arahy.Tifrunner.gnm1.ann1.9LWV25 Arachis hypogaea HOM05D004813 ORTHO05D005889 2.9e-121 440.3 618 53.7
Glyma.05G038800 Glycine max HOM05D004813 ORTHO05D005889 8.5e-121 438.7 611 53.7
Oeu016404.1 Olea europaea HOM05D004813 ORTHO05D005889 8.5e-121 438.7 617 53.3
GSVIVG01007723001 Vitis vinifera HOM05D004813 ORTHO05D005889 1.1e-120 438.3 601 47.1
Rhsim12G0165800 Rhododendron simsii HOM05D004813 ORTHO05D005889 4.2e-120 436.4 602 46.2
Atru.chr8.1447 Acer truncatum HOM05D004813 ORTHO05D005889 1.2e-119 434.9 615 53.7
COL.COLO4_30069 Corchorus olitorius HOM05D004813 ORTHO05D005889 1.2e-119 434.9 602 51.3
VMungo1215G0389 Vigna mungo HOM05D004813 ORTHO05D005889 7.9e-119 432.2 614 52.1
Sc04g0001740 Simmondsia chinensis HOM05D004813 ORTHO05D005889 1.8e-118 431.0 625 51.5
DCAR_031351 Daucus carota HOM05D004813 ORTHO05D005889 3.0e-118 430.3 600 52.7
Potri.015G078500 Populus trichocarpa HOM05D004813 ORTHO05D005889 3.0e-118 430.3 609 52.5
CARHR281210 Cardamine hirsuta HOM05D004813 ORTHO05D005889 3.9e-118 429.9 616 51.9
Gohir.A12G275100 Gossypium hirsutum HOM05D004813 ORTHO05D005889 3.9e-118 429.9 608 54.8
BcaB02g10019 Brassica carinata HOM05D004813 ORTHO05D005889 5.1e-118 429.5 602 51.8
Thhalv10003981m.g Eutrema salsugineum HOM05D004813 ORTHO05D005889 1.1e-117 428.3 609 53.2
BcaNung05723 Brassica carinata HOM05D004813 ORTHO05D005889 4.8e-116 422.9 612 53.8
Medtr4g105590 Medicago truncatula HOM05D004813 ORTHO05D005889 4.8e-116 422.9 648 51.5
Hund02755 Selenicereus undatus HOM05D004813 ORTHO05D005889 1.8e-115 421.0 613 51.2
Glyma.17G088200 Glycine max HOM05D004813 ORTHO05D005889 5.3e-115 419.5 611 52.2
Lalb_Chr07g0182801 Lupinus albus HOM05D004813 ORTHO05D005889 9.1e-115 418.7 632 50.3
BolC9t54072H Brassica oleracea HOM05D004813 ORTHO05D005889 3.4e-114 416.8 610 53.1
Psat4g058360 Pisum sativum HOM05D004813 ORTHO05D005889 5.9e-114 416.0 620 43.7
CDE05G0644 Ceratophyllum demersum HOM05D004813 ORTHO05D005889 2.2e-113 414.1 619 53.2
Lsat_1_v5_gn_4_75841 Lactuca sativa HOM05D004813 ORTHO05D005889 5.0e-113 412.9 614 49.5
Sp2g30180 Schrenkiella parvula HOM05D004813 ORTHO05D005889 1.1e-112 411.8 608 51.8
A07p17440 Brassica napus HOM05D004813 ORTHO05D005889 1.9e-112 411.0 606 47.5
Ca_21934_v3 Cicer arietinum L. HOM05D004813 ORTHO05D005889 2.5e-112 410.6 613 50.7
BcaC04g23133 Brassica carinata HOM05D004813 ORTHO05D005889 3.2e-112 410.2 607 52.2
PGSC0003DMG400018096 Solanum tuberosum HOM05D004813 ORTHO05D005889 7.2e-112 409.1 605 54.2
AT5G66540 Arabidopsis thaliana HOM05D004813 ORTHO05D005889 9.4e-112 408.7 612 54.1
C09p11820 Brassica napus HOM05D004813 ORTHO05D005889 1.6e-111 407.9 611 51.1
BraA09t36642Z Brassica rapa HOM05D004813 ORTHO05D005889 1.6e-111 407.9 602 50.8
Carub.0002s0981 Capsella rubella HOM05D004813 ORTHO05D005889 3.6e-111 406.8 608 52.0
PSO063G0570 Papaver somniferum HOM05D004813 ORTHO05D005889 1.0e-110 405.2 606 49.8
Lj4g0001275 Lotus japonicus HOM05D004813 ORTHO05D005889 2.3e-110 404.1 612 51.6
A09p09960 Brassica napus HOM05D004813 ORTHO05D005889 3.9e-110 403.3 602 50.7
ECA232G2493 Erigeron canadensis HOM05D004813 ORTHO05D005889 1.5e-109 401.4 624 45.8
PSO832G2178 Papaver somniferum HOM05D004813 ORTHO05D005889 2.0e-109 401.0 606 50.7
Sopen03g031900 Solanum pennellii HOM05D004813 ORTHO05D005889 4.4e-109 399.8 605 53.4
Solyc03g112820.4 Solanum lycopersicum HOM05D004813 ORTHO05D005889 7.4e-109 399.1 605 54.0
RcHm_v2.0_Chr7g0193361 Rosa chinensis HOM05D004813 ORTHO05D005889 9.7e-109 398.7 619 50.7
Aa31LG1G15060 Aethionema arabicum HOM05D004813 ORTHO05D005889 1.3e-108 398.3 616 47.2
Atru.chr9.2495 Acer truncatum HOM05D004813 ORTHO05D005889 1.7e-108 397.9 590 52.7
Carub.0008s2799 Capsella rubella HOM05D004813 ORTHO05D005889 1.7e-108 397.9 611 49.6
Aqoxy3G02883 Aquilegia oxysepala HOM05D004813 ORTHO05D005889 3.7e-108 396.7 633 49.1
HanXRQChr15g0463041 Helianthus annuus HOM05D004813 ORTHO05D005889 1.8e-107 394.4 633 49.0
TPR.G37503 Trifolium pratense HOM05D004813 ORTHO05D005889 7.0e-107 392.5 615 50.7
unitig_0.g15 Utricularia gibba HOM05D004813 ORTHO05D005889 9.1e-107 392.1 600 48.8
FAN04G1884 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.0e-105 388.7 615 48.8
FAN08G2504 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.0e-105 388.7 615 49.3
AL8G44980 Arabidopsis lyrata HOM05D004813 ORTHO05D005889 1.1e-104 385.2 613 51.2
Lj9A420T39 Lonicera japonica HOM05D004813 ORTHO05D005889 1.5e-104 384.8 611 43.2
FAN13G1879 Fragaria x ananassa HOM05D004813 ORTHO05D005889 3.2e-104 383.6 615 48.6
Migut.D01957 Erythranthe guttata HOM05D004813 ORTHO05D005889 7.2e-104 382.5 640 45.8
FAN18G4177 Fragaria x ananassa HOM05D004813 ORTHO05D005889 7.2e-104 382.5 615 47.3
SalBow6G0518 Salvia bowleyana HOM05D004813 ORTHO05D005889 3.0e-102 377.1 644 49.8
SGA_v2.0_scaffold114G31819 Striga asiatica HOM05D004813 ORTHO05D005889 4.0e-102 376.7 673 49.8
ATR1091G095 Amborella trichopoda HOM05D004813 ORTHO05D005889 8.8e-102 375.6 607 41.5
FvH4_5g05471 Fragaria vesca HOM05D004813 ORTHO05D005889 2.0e-101 374.4 618 50.3
FAN18G0441 Fragaria x ananassa HOM05D004813 ORTHO05D005889 8.2e-100 369.0 614 48.0
EL10Ac9g21440 Beta vulgaris HOM05D004813 ORTHO05D005889 1.1e-96 358.6 634 48.6
AUR62010096 Chenopodium quinoa HOM05D004813 ORTHO05D005889 3.2e-96 357.1 591 41.1
Zm00001eb293550 Zea mays HOM05D004813 ORTHO05D005889 4.2e-96 356.7 619 44.1
AUR62013092 Chenopodium quinoa HOM05D004813 ORTHO05D005889 9.4e-96 355.5 573 42.9
Haze_17000 Corylus avellana HOM05D004813 ORTHO05D005889 9.4e-96 355.5 610 44.1
BraA07t29465Z Brassica rapa HOM05D004813 ORTHO05D005889 1.2e-95 355.1 556 49.5
Os12g0133900 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 9.1e-91 339.0 605 47.3
Os11g0137100 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 1.2e-90 338.6 612 47.5
HPP92_018752 Vanilla planifolia HOM05D004813 ORTHO05D005889 7.2e-88 329.3 600 45.3
MD01G1006000 Malus domestica HOM05D004813 ORTHO05D005889 5.0e-81 306.6 427 50.8
Ah.01g009190 Amaranthus hybridus HOM05D004813 ORTHO05D005889 1.4e-78 298.5 629 44.7
Nitab4.5_0008678g0020 Nicotiana tabacum HOM05D004813 ORTHO05D005889 5.7e-77 293.1 354 51.1
Psat4g058280 Pisum sativum HOM05D004813 ORTHO05D005889 6.6e-73 279.6 603 34.7
Actinidia19105 Actinidia chinensis HOM05D004813 ORTHO05D005889 1.9e-72 278.1 404 52.5
Pp3c4_31210 Physcomitrium patens HOM05D004813 ORTHO05D005889 7.3e-72 276.2 614 40.1
Mapoly0077s0037 Marchantia polymorpha HOM05D004813 ORTHO05D005889 6.2e-71 273.1 603 39.1
SMO367G0656 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 7.5e-69 266.2 573 35.4
SMO275G0031 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 6.6e-65 253.1 556 35.6
Oeu020911.1 Olea europaea HOM05D004813 ORTHO05D005889 3.6e-63 247.3 628 37.6
AagrBONN_evm.TU.Sc2ySwM_369.357 Anthoceros agrestis HOM05D004813 ORTHO05D005889 1.4e-62 245.4 620 33.1
CAN.G1166.5 Capsicum annuum HOM05D004813 ORTHO05D005889 1.2e-53 215.7 152 72.4
PGR044G0267 Punica granatum HOM05D004813 ORTHO05D005889 1.5e-48 198.7 194 58.2
CAN.G1166.4 Capsicum annuum HOM05D004813 ORTHO05D005889 2.5e-48 198.0 394 45.4
arahy.Tifrunner.gnm1.ann1.J34B41 Arachis hypogaea HOM05D004813 ORTHO05D005889 5.6e-48 196.8 255 49.0
Actinidia19106 Actinidia chinensis HOM05D004813 ORTHO05D005889 5.2e-46 190.3 126 77.0
BolC7t43059H Brassica oleracea HOM05D004813 ORTHO05D005889 2.6e-45 188.0 286 42.7
SEGI_37748 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 3.2e-43 181.0 404 45.5
CBR_g26354 Chara braunii HOM05D004813 ORTHO05D005889 1.6e-42 178.7 270 40.4
Cre08.g370601 Chlamydomonas reinhardtii HOM05D004813 ORTHO05D005889 1.9e-40 171.8 279 38.7
BcaC06g34713 Brassica carinata HOM05D004813 ORTHO05D005889 3.8e-36 157.5 153 56.2
BcaNung06644 Brassica carinata HOM05D004813 ORTHO05D005889 3.8e-36 157.5 153 56.2
C07p25370 Brassica napus HOM05D004813 ORTHO05D005889 9.3e-35 152.9 279 39.4
PRCOL_00002680 Prasinoderma coloniale HOM05D004813 ORTHO05D005889 1.5e-29 135.6 284 33.1
SEGI_16864 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 1.1e-27 129.4 90 74.4
BcaB02g10018 Brassica carinata HOM05D004813 ORTHO05D005889 1.3e-25 122.5 130 53.1
Haze_20617 Corylus avellana HOM05D004813 ORTHO05D005889 1.3e-25 122.5 152 50.7
MBI14_g23619_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.6e-18 99.0 61 78.7
MBI07_g10351_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 3.9e-17 94.4 129 45.7
Potri.003G194550 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.3e-15 89.4 85 57.6
MBI05_g41028_MAGBIO Magnolia biondii HOM05D000669 ORTHO05D005889 6.9e-14 83.6 57 73.7
Lj3g0016907 Lotus japonicus HOM05D004813 ORTHO05D005889 1.5e-13 82.4 61 68.9
MCO01G452 Micromonas commoda HOM05D004813 ORTHO05D005889 1.5e-13 82.4 297 28.3
SEGI_40991 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 1.1e-11 76.3 67 56.7
SalBow1G5081 Salvia bowleyana HOM05D004813 ORTHO05D018488 2.1e-10 72.0 55 69.1
Lj6g0012951 Lotus japonicus HOM05D004813 ORTHO05D005889 3.9e-09 67.8 68 55.9
arahy.Tifrunner.gnm1.ann1.YI6NTU Arachis hypogaea HOM05D004813 ORTHO05D005889 4.3e-08 64.3 48 68.8
HanXRQChr11g0336351 Helianthus annuus HOM05D004813 ORTHO05D005889 5.7e-08 63.9 123 35.0
MBI03_g03787_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 9.7e-08 63.2 37 78.4
BcaC06g34714 Brassica carinata HOM05D000589 ORTHO05D001885 1.8e-06 58.9 50 64.0


User provided reference genes

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