Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G015860 Citrullus lanatus HOM05D001674 ORTHO05D008599 0.0e+00 3122.0 1702 100.0
MELO3C017205.2 Cucumis melo HOM05D001674 ORTHO05D008599 0.0e+00 2769.2 1703 89.1
CsaV3_1G002700 Cucumis sativus L. HOM05D001674 ORTHO05D008599 0.0e+00 2745.3 1703 88.7
Sed0027646 Sechium edule HOM05D001674 ORTHO05D008599 0.0e+00 2582.7 1701 83.4
QL10p018629 Quercus lobata HOM05D001674 ORTHO05D008599 0.0e+00 1699.9 1727 61.2
GSVIVG01007917001 Vitis vinifera HOM05D001674 ORTHO05D008599 0.0e+00 1584.7 1661 57.6
Thecc.03G096700 Theobroma cacao HOM05D001674 ORTHO05D008599 0.0e+00 1575.8 1725 57.8
Atru.chr9.280 Acer truncatum HOM05D001674 ORTHO05D008599 0.0e+00 1573.5 1733 57.0
COL.COLO4_36885 Corchorus olitorius HOM05D001674 ORTHO05D008599 0.0e+00 1572.0 1724 58.0
Duzib068G0733 Durio zibethinus HOM05D001674 ORTHO05D008599 0.0e+00 1558.5 1719 57.5
Ciclev10018469m.g Citrus clementina HOM05D001674 ORTHO05D008599 0.0e+00 1543.9 1728 57.2
TAR629G0913 Trochodendron aralioides HOM05D001674 ORTHO05D008599 0.0e+00 1533.9 1756 55.5
Prupe.5G200400 Prunus persica HOM05D001674 ORTHO05D008599 0.0e+00 1528.5 1724 57.3
CANSAT80G0851 Cannabis sativa HOM05D001674 ORTHO05D008599 0.0e+00 1526.1 1751 56.8
Gorai.007G039000 Gossypium raimondii HOM05D001674 ORTHO05D008599 0.0e+00 1513.4 1728 56.4
Gohir.A11G032900 Gossypium hirsutum HOM05D001674 ORTHO05D008599 0.0e+00 1484.9 1728 56.0
RcHm_v2.0_Chr7g0182421 Rosa chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1484.5 1711 56.0
Haze_07676 Corylus avellana HOM05D001674 ORTHO05D008599 0.0e+00 1483.0 1512 62.4
PGR083G0537 Punica granatum HOM05D001674 ORTHO05D008599 0.0e+00 1477.2 1719 53.9
Nn4g23353 Nelumbo nucifera HOM05D001674 ORTHO05D008599 0.0e+00 1474.9 1751 53.7
Manes.06G087600 Manihot esculenta HOM05D001674 ORTHO05D008599 0.0e+00 1473.4 1818 53.7
Lalb_Chr13g0302981 Lupinus albus HOM05D001674 ORTHO05D008599 0.0e+00 1469.9 1727 54.2
vmacro17586 Vaccinium macrocarpon HOM05D001674 ORTHO05D008599 0.0e+00 1469.5 1730 53.9
VMungo1215G3312 Vigna mungo HOM05D001674 ORTHO05D008599 0.0e+00 1468.8 1733 54.5
Glyma.17G076400 Glycine max HOM05D001674 ORTHO05D008599 0.0e+00 1466.8 1728 54.1
TWI15G1152 Tripterygium wilfordii HOM05D001674 ORTHO05D008599 0.0e+00 1464.9 1719 54.9
Glyma.05G023300 Glycine max HOM05D001674 ORTHO05D008599 0.0e+00 1459.5 1729 54.0
Sabra12G0048200 Salix brachista HOM05D001674 ORTHO05D008599 0.0e+00 1452.2 1932 51.1
FAN08G0876 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1451.0 1717 55.4
Phvul.003G186700 Phaseolus vulgaris HOM05D001674 ORTHO05D008599 0.0e+00 1448.3 1729 54.1
Lj4g0011824 Lotus japonicus HOM05D001674 ORTHO05D008599 0.0e+00 1436.8 1742 53.8
FvH4_5g14340 Fragaria vesca HOM05D001674 ORTHO05D008599 0.0e+00 1436.4 1723 55.4
FAN18G2329 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1432.5 1723 55.4
FAN13G3105 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1431.0 1723 55.3
TPR.G2046 Trifolium pratense HOM05D001674 ORTHO05D008599 0.0e+00 1428.3 1723 53.6
Hma1.2p1_0060F.1_g033350 Hydrangea macrophylla HOM05D001674 ORTHO05D008599 0.0e+00 1421.8 1698 54.4
arahy.Tifrunner.gnm1.ann1.MMN4BF Arachis hypogaea HOM05D001674 ORTHO05D008599 0.0e+00 1420.6 1721 53.3
Medtr4g109230 Medicago truncatula HOM05D001674 ORTHO05D008599 0.0e+00 1412.9 1731 53.0
Psat4g048680 Pisum sativum HOM05D001674 ORTHO05D008599 0.0e+00 1389.4 1720 53.2
Ca_21793_v3 Cicer arietinum L. HOM05D001674 ORTHO05D008599 0.0e+00 1388.6 1709 53.9
Potri.012G066900 Populus trichocarpa HOM05D001674 ORTHO05D008599 0.0e+00 1382.5 1616 55.6
Cc00_g02250 Coffea canephora HOM05D001674 ORTHO05D008599 0.0e+00 1366.3 1777 51.6
Aqoxy3G00452 Aquilegia oxysepala HOM05D001674 ORTHO05D008599 0.0e+00 1365.5 1745 51.3
Actinidia04849 Actinidia chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1361.3 1432 60.5
Eucgr.B00566 Eucalyptus grandis HOM05D001674 ORTHO05D008599 0.0e+00 1352.0 1506 56.8
Oeu032213.1 Olea europaea HOM05D001674 ORTHO05D008599 0.0e+00 1336.6 1757 51.5
AUR62021608 Chenopodium quinoa HOM05D001674 ORTHO05D008599 0.0e+00 1316.6 1742 51.1
Migut.D01672 Erythranthe guttata HOM05D001674 ORTHO05D008599 0.0e+00 1309.3 1734 49.7
DCAR_031671 Daucus carota HOM05D001674 ORTHO05D008599 0.0e+00 1307.7 1732 51.0
CAN.G479.33 Capsicum annuum HOM05D001674 ORTHO05D008599 0.0e+00 1298.1 1715 51.1
Nitab4.5_0004511g0020 Nicotiana tabacum HOM05D001674 ORTHO05D008599 0.0e+00 1297.0 1699 52.1
MSTRG.9602 Avicennia marina HOM05D001674 ORTHO05D008599 0.0e+00 1287.7 1751 50.8
Hund02613 Selenicereus undatus HOM05D001674 ORTHO05D008599 0.0e+00 1280.4 1737 49.5
PSO478G4640 Papaver somniferum HOM05D001674 ORTHO05D008599 0.0e+00 1279.6 1819 48.4
Sopen03g034510 Solanum pennellii HOM05D001674 ORTHO05D008599 0.0e+00 1276.9 1721 51.5
AUR62008489 Chenopodium quinoa HOM05D001674 ORTHO05D008599 0.0e+00 1273.1 1769 49.0
SalBow7G3498 Salvia bowleyana HOM05D001674 ORTHO05D008599 0.0e+00 1271.1 1757 48.2
Rhsim08G0149500 Rhododendron simsii HOM05D001674 ORTHO05D008599 0.0e+00 1261.1 1513 53.6
HanXRQChr04g0107361 Helianthus annuus HOM05D001674 ORTHO05D008599 0.0e+00 1250.3 1715 48.7
PSO017G4474 Papaver somniferum HOM05D001674 ORTHO05D008599 0.0e+00 1243.8 1816 48.1
ECA247G0462 Erigeron canadensis HOM05D001674 ORTHO05D008599 0.0e+00 1234.6 1700 48.9
Lsat_1_v5_gn_1_13760 Lactuca sativa HOM05D001674 ORTHO05D008599 0.0e+00 1219.1 1683 49.0
CiPaw.11G049600 Carya illinoinensis HOM05D001674 ORTHO05D008599 0.0e+00 1208.0 1305 59.6
Gohir.D11G036200 Gossypium hirsutum HOM05D001674 ORTHO05D008599 0.0e+00 1206.0 1179 62.8
SGA_v2.0_scaffold3G01735 Striga asiatica HOM05D001674 ORTHO05D008599 0.0e+00 1171.0 1763 45.2
Cpa.g.sc94.3 Carica papaya HOM05D001674 ORTHO05D008599 0.0e+00 1162.9 1246 59.2
MD14G1208500 Malus domestica HOM05D001674 ORTHO05D008599 0.0e+00 1158.3 1239 60.9
ATR0064G082 Amborella trichopoda HOM05D001674 ORTHO05D008599 0.0e+00 1147.1 1372 54.0
Peaxi162Scf00201g00021 Petunia axillaris HOM05D001674 ORTHO05D008599 0.0e+00 1085.9 1244 56.3
PGSC0003DMG400024553 Solanum tuberosum HOM05D001674 ORTHO05D008599 0.0e+00 1080.9 1489 51.2
Sc12g0006570 Simmondsia chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1078.5 1281 55.0
Solyc03g115510.3 Solanum lycopersicum HOM05D001674 ORTHO05D008599 4.7e-311 1072.0 1245 56.1
Dinv10682 Davidia involucrata HOM05D001674 ORTHO05D008599 1.0e-302 1044.3 955 64.8
SEGI_10628 Sequoiadendron giganteum HOM05D001674 ORTHO05D008599 1.4e-299 1033.9 1724 44.1
Zm00001eb108430 Zea mays HOM05D001674 ORTHO05D008599 4.4e-293 1012.3 1513 47.7
Lj5A106T70 Lonicera japonica HOM05D001674 ORTHO05D008599 1.7e-289 1000.3 1259 52.1
Actinidia09243 Actinidia chinensis HOM05D001674 ORTHO05D008599 3.6e-271 939.5 962 59.8
Nitab4.5_0020510g0010 Nicotiana tabacum HOM05D001674 ORTHO05D008599 3.1e-262 909.8 1028 58.8
Dinv38777 Davidia involucrata HOM05D001674 ORTHO05D008599 1.5e-261 907.5 825 64.1
Ah.02g113890 Amaranthus hybridus HOM05D001674 ORTHO05D008599 2.3e-257 893.6 1474 44.8
Pp3c11_9170 Physcomitrium patens HOM05D001674 ORTHO05D008599 6.4e-244 849.0 1619 41.3
unitig_37.g12722 Utricularia gibba HOM05D001674 ORTHO05D008599 7.4e-232 808.9 1146 48.1
SMO117G0045 Selaginella moellendorffii HOM05D001674 ORTHO05D008599 4.2e-227 793.1 1254 44.9
Os06g0235300 Oryza sativa ssp. japonica HOM05D001674 ORTHO05D008599 5.0e-188 663.3 1084 46.1
AagrBONN_evm.TU.Sc2ySwM_228.3354 Anthoceros agrestis HOM05D001674 ORTHO05D008599 3.0e-169 600.9 865 45.8
Dinv10683 Davidia involucrata HOM05D001674 ORTHO05D008599 1.3e-159 568.9 735 49.3
CDE07G0766 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 4.0e-137 494.2 861 43.4
Pp3c1_9760 Physcomitrium patens HOM05D001674 ORTHO05D008599 8.4e-135 486.5 1218 34.6
CDE07G0117 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 2.4e-134 485.0 557 53.1
Actinidia09244 Actinidia chinensis HOM05D001674 ORTHO05D008599 9.6e-131 473.0 733 44.2
Dinv38778 Davidia involucrata HOM05D001674 ORTHO05D008599 9.7e-99 366.7 739 38.6
Actinidia09199 Actinidia chinensis HOM05D001674 ORTHO05D008599 4.1e-73 281.6 694 35.2
Lj5A106T69 Lonicera japonica HOM05D001674 ORTHO05D008599 7.0e-73 280.8 501 40.5
Ah.02g113880 Amaranthus hybridus HOM05D001674 ORTHO05D008599 1.0e-63 250.4 209 59.3
MD14G1208300 Malus domestica HOM05D001674 ORTHO05D008599 5.7e-59 234.6 234 52.6
Nitab4.5_0002881g0120 Nicotiana tabacum HOM05D001674 ORTHO05D008599 1.2e-48 200.3 455 37.6
Rhsim08G0149700 Rhododendron simsii HOM05D001674 ORTHO05D008599 1.5e-46 193.4 211 53.6
Cpa.g.sc94.4 Carica papaya HOM05D001674 ORTHO05D008599 3.7e-42 178.7 171 59.6
unitig_37.g12721 Utricularia gibba HOM05D001674 ORTHO05D008599 2.7e-40 172.6 158 58.2
CDE07G0655 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 6.2e-37 161.4 141 60.3
Actinidia09209 Actinidia chinensis HOM05D001674 ORTHO05D008599 8.3e-34 151.0 152 57.2
CBR_g23198 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-31 144.1 257 36.2
PRCOL_00000483 Prasinoderma coloniale HOM05D001674 ORTHO05D008599 1.5e-30 140.2 1364 22.7
Actinidia09203 Actinidia chinensis HOM05D001674 ORTHO05D008599 6.8e-28 131.3 129 59.7
MCO15G104 Micromonas commoda HOM05D001674 ORTHO05D008599 1.7e-26 126.7 232 33.6
CBR_g23193 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-23 117.1 119 54.6
Cre16.g679400 Chlamydomonas reinhardtii HOM05D001674 ORTHO05D008599 7.3e-22 111.3 291 29.6
TAR376G0971 Trochodendron aralioides HOM05D001674 ORTHO05D008599 2.4e-20 106.3 110 55.5
Actinidia09211 Actinidia chinensis HOM05D001674 ORTHO05D008599 6.0e-16 91.7 291 29.9
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 6.6e-15 88.2 59 71.2
Actinidia09202 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.5e-14 87.0 86 53.5
CBR_g23210 Chara braunii HOM05D000019 ORTHO05D000002 4.3e-14 85.5 63 55.6
CBR_g23187 Chara braunii HOM05D001674 ORTHO05D000353 1.3e-13 84.0 79 53.2
PGSC0003DMG400006818 Solanum tuberosum HOM05D001674 ORTHO05D008599 4.0e-12 79.0 154 35.1
unitig_37.g12720 Utricularia gibba HOM05D001674 ORTHO05D008599 1.8e-07 63.5 176 30.7


User provided reference genes

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