Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 2.2e-263 912.5 780 100.0
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 6.7e-148 528.9 558 91.0
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 3.2e-142 510.0 692 81.6
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 1.5e-78 298.5 482 67.0
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 6.2e-77 293.1 464 68.5
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 1.1e-76 292.4 482 65.1
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 4.0e-76 290.4 268 73.9
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 4.0e-76 290.4 268 73.9
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 6.9e-76 289.7 261 71.6
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 5.8e-75 286.6 430 74.9
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 2.9e-74 284.3 431 69.6
Manes.06G007500 Manihot esculenta HOM05D006707 ORTHO05D008243 1.1e-73 282.3 261 72.0
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 7.9e-72 276.2 430 75.3
Potri.015G039300 Populus trichocarpa HOM05D006707 ORTHO05D008243 1.0e-71 275.8 308 63.3
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 6.7e-71 273.1 267 69.7
Lj5P156T67 Lonicera japonica HOM05D006707 ORTHO05D008243 8.7e-71 272.7 313 62.3
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 1.1e-70 272.3 430 60.2
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 3.3e-70 270.8 461 67.0
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 7.4e-70 269.6 310 62.6
Sabra15G0070700 Salix brachista HOM05D006707 ORTHO05D008243 7.4e-70 269.6 310 62.6
Sabra15G0038500 Salix brachista HOM05D006707 ORTHO05D008243 3.7e-69 267.3 255 72.2
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 8.2e-69 266.2 430 73.0
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 8.2e-69 266.2 433 69.1
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 2.4e-68 264.6 430 61.2
Sabra15G0057600 Salix brachista HOM05D006707 ORTHO05D008243 6.9e-68 263.1 310 61.3
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 1.5e-67 261.9 432 65.5
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 1.5e-67 261.9 408 78.7
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 2.6e-67 261.2 430 54.4
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 3.4e-67 260.8 475 50.9
AUR62035893 Chenopodium quinoa HOM05D006707 ORTHO05D008243 1.3e-66 258.8 262 66.4
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 1.3e-66 258.8 281 66.9
Actinidia25143 Actinidia chinensis HOM05D006707 ORTHO05D008243 2.2e-66 258.1 269 66.2
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 2.9e-66 257.7 256 69.5
Haze_21123 Corylus avellana HOM05D006707 ORTHO05D008243 5.0e-66 256.9 319 60.2
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 8.4e-66 256.1 430 67.2
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 2.5e-65 254.6 431 47.8
RhsimUnG0239000 Rhododendron simsii HOM05D006707 ORTHO05D008243 2.5e-65 254.6 303 60.7
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 4.2e-65 253.8 313 58.8
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 5.5e-65 253.4 430 61.9
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 5.5e-65 253.4 472 52.3
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 7.1e-65 253.1 313 58.8
RhsimUnG0220600 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.2e-64 252.3 262 66.8
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 1.2e-64 252.3 427 59.3
Sc10g0004790 Simmondsia chinensis HOM05D006707 ORTHO05D008243 1.6e-64 251.9 268 68.7
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 2.1e-64 251.5 313 58.5
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 2.1e-64 251.5 313 58.5
Rhsim03G0042300 Rhododendron simsii HOM05D006707 ORTHO05D008243 3.5e-64 250.8 262 66.4
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 2.3e-63 248.1 537 63.5
MSTRG.16972 Avicennia marina HOM05D006707 ORTHO05D008243 6.7e-63 246.5 260 66.9
Lsat_1_v5_gn_6_99620 Lactuca sativa HOM05D006707 ORTHO05D008243 6.7e-63 246.5 629 50.9
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 8.7e-63 246.1 524 44.7
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 1.5e-62 245.4 422 63.0
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 1.6e-61 241.9 434 37.1
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 3.1e-60 237.7 429 45.0
Oeu010709.1 Olea europaea HOM05D006707 ORTHO05D008243 1.7e-58 231.9 260 61.9
Migut.I00309 Erythranthe guttata HOM05D006707 ORTHO05D008243 6.5e-58 229.9 258 64.0
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 1.4e-57 228.8 425 59.1
Cc04_g06350 Coffea canephora HOM05D006707 ORTHO05D008243 1.2e-56 225.7 474 60.3
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 1.6e-56 225.3 430 55.6
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 2.3e-55 221.5 386 67.9
PSO478G5041 Papaver somniferum HOM05D006707 ORTHO05D008243 3.9e-55 220.7 262 63.4
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 6.7e-55 219.9 410 71.0
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 1.5e-54 218.8 386 51.8
Aa31LG8G4870 Aethionema arabicum HOM05D006707 ORTHO05D008243 2.0e-54 218.4 261 62.1
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 1.3e-53 215.7 428 68.5
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 3.1e-52 211.1 261 61.7
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 3.1e-52 211.1 261 61.7
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 3.1e-52 211.1 386 56.7
DCAR_014733 Daucus carota HOM05D006707 ORTHO05D008243 5.3e-52 210.3 253 62.5
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 6.9e-52 209.9 261 60.9
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 6.9e-52 209.9 429 60.6
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 9.1e-52 209.5 261 62.1
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 1.5e-51 208.8 538 55.9
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 4.5e-51 207.2 261 60.9
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 4.5e-51 207.2 261 60.9
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 1.7e-50 205.3 261 61.3
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 3.8e-50 204.1 261 59.4
Carub.0003s1773 Capsella rubella HOM05D006707 ORTHO05D008243 5.0e-50 203.8 261 60.2
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 2.5e-49 201.4 261 60.9
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 3.0e-47 194.5 231 65.8
HanXRQChr10g0279071 Helianthus annuus HOM05D006707 ORTHO05D008243 5.1e-47 193.7 469 54.6
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 5.1e-47 193.7 387 63.0
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 2.0e-46 191.8 386 55.2
PGR044G0521 Punica granatum HOM05D006707 ORTHO05D008243 2.6e-46 191.4 309 52.1
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 9.7e-46 189.5 387 73.9
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 4.8e-45 187.2 387 73.6
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 7.0e-44 183.3 219 66.7
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 7.0e-44 183.3 218 65.6
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 4.2e-41 174.1 220 64.1
Atru.BG.186.p Acer truncatum HOM05D006707 ORTHO05D008243 1.2e-40 172.6 218 66.5
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 7.4e-38 163.3 222 62.2
Haze_18837 Corylus avellana HOM05D006707 ORTHO05D008243 3.7e-37 161.0 135 58.5
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 1.8e-36 158.7 221 62.0
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 5.3e-36 157.1 221 61.5
PSO017G3187 Papaver somniferum HOM05D006707 ORTHO05D008243 5.3e-36 157.1 146 54.1
MELO3C017354.2 Cucumis melo HOM05D006707 ORTHO05D008243 2.6e-35 154.8 241 94.6
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 5.0e-34 150.6 256 55.9
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 8.0e-32 143.3 257 50.6
SEGI_24072 Sequoiadendron giganteum HOM05D006707 ORTHO05D008243 7.0e-28 130.2 262 50.8
QL11p014441 Quercus lobata HOM05D006707 ORTHO05D008243 1.0e-23 116.3 144 47.2
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 6.8e-23 113.6 451 49.4
Rhsim03G0043000 Rhododendron simsii HOM05D006707 ORTHO05D008243 3.1e-20 104.8 227 66.1
BraA05t22010Z Brassica rapa HOM05D006707 ORTHO05D008243 2.9e-18 98.2 164 33.5
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 1.1e-17 96.3 408 27.0
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 1.9e-17 95.5 233 46.8
arahy.Tifrunner.gnm1.ann1.55ENF0 Arachis hypogaea HOM05D006707 ORTHO05D008243 8.9e-15 86.7 141 36.2
Ciclev10024364m.g Citrus clementina HOM05D006707 ORTHO05D008243 1.2e-14 86.3 64 68.8
Lj5P156T63 Lonicera japonica HOM05D006707 ORTHO05D008243 1.5e-14 85.9 55 78.2
RhsimUnG0220500 Rhododendron simsii HOM05D006707 ORTHO05D008243 9.8e-14 83.2 53 69.8
CSS0017365 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 1.1e-12 79.7 60 68.3
CSS0026236 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 1.1e-12 79.7 60 68.3
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 1.0e-10 73.2 413 23.7
arahy.Tifrunner.gnm1.ann1.1F7K7B Arachis hypogaea HOM05D006707 ORTHO05D008243 6.6e-10 70.5 51 64.7
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 3.3e-09 68.2 217 27.2
PSO017G4261 Papaver somniferum HOM05D006707 ORTHO05D008243 3.3e-09 68.2 48 68.8
Manes.06G007451 Manihot esculenta HOM05D006707 ORTHO05D008243 6.2e-08 63.9 41 73.2
Phvul.008G091500 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 1.4e-07 62.8 236 25.8


User provided reference genes

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