Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G012630 Citrullus lanatus HOM05D005762 ORTHO05D006823 2.4e-99 365.5 190 100.0
Sed0006648 Sechium edule HOM05D005762 ORTHO05D006823 1.4e-91 339.7 191 94.2
MELO3C010201.2 Cucumis melo HOM05D005762 ORTHO05D006823 2.9e-89 332.0 190 92.1
Sed0007428 Sechium edule HOM05D005762 ORTHO05D006823 5.0e-89 331.3 190 90.0
Prupe.7G266400 Prunus persica HOM05D005762 ORTHO05D006823 9.8e-77 290.4 191 80.1
Gorai.008G090500 Gossypium raimondii HOM05D005762 ORTHO05D006823 3.7e-76 288.5 191 78.0
CiPaw.16G107100 Carya illinoinensis HOM05D005762 ORTHO05D006823 6.0e-74 281.2 191 79.1
Thecc.01G095900 Theobroma cacao HOM05D005762 ORTHO05D006823 7.8e-74 280.8 191 75.9
Gohir.D12G082500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 1.3e-73 280.0 191 77.0
Duzib147G0575 Durio zibethinus HOM05D005762 ORTHO05D006823 2.3e-73 279.3 191 74.9
Eucgr.C02513 Eucalyptus grandis HOM05D005762 ORTHO05D006823 8.6e-73 277.3 191 75.9
Eucgr.L01546 Eucalyptus grandis HOM05D005762 ORTHO05D006823 8.6e-73 277.3 191 75.9
Lalb_Chr16g0380631 Lupinus albus HOM05D005762 ORTHO05D006823 1.5e-72 276.6 196 78.1
COL.COLO4_27292 Corchorus olitorius HOM05D005762 ORTHO05D006823 2.5e-72 275.8 191 72.3
Gohir.A12G083500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 1.6e-71 273.1 191 77.0
TWI34G1522 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 6.2e-71 271.2 191 75.4
Atru.chr7.1163 Acer truncatum HOM05D005762 ORTHO05D006823 8.1e-71 270.8 191 74.3
arahy.Tifrunner.gnm1.ann1.0D8FTQ Arachis hypogaea HOM05D005762 ORTHO05D006823 2.3e-70 269.2 190 76.8
Glyma.19G036900 Glycine max HOM05D005762 ORTHO05D006823 4.0e-70 268.5 193 76.2
Lj2g0011355 Lotus japonicus HOM05D005762 ORTHO05D006823 1.2e-69 266.9 193 76.7
Lalb_Chr05g0215351 Lupinus albus HOM05D005762 ORTHO05D006823 2.6e-69 265.8 194 76.3
arahy.Tifrunner.gnm1.ann1.3SV7H4 Arachis hypogaea HOM05D005762 ORTHO05D006823 3.4e-69 265.4 190 75.8
Phvul.004G044600 Phaseolus vulgaris HOM05D005762 ORTHO05D006823 3.4e-69 265.4 191 73.8
TWI63G0575 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 5.8e-69 264.6 189 73.0
GSVIVG01023684001 Vitis vinifera HOM05D005762 ORTHO05D006823 1.7e-68 263.1 189 72.5
Manes.14G112900 Manihot esculenta HOM05D005762 ORTHO05D006823 1.9e-67 259.6 191 74.3
Dinv42823 Davidia involucrata HOM05D005762 ORTHO05D006823 5.4e-67 258.1 191 73.3
Dinv43277 Davidia involucrata HOM05D005762 ORTHO05D006823 5.4e-67 258.1 191 73.3
TAR625G0504 Trochodendron aralioides HOM05D005762 ORTHO05D006823 5.4e-67 258.1 195 71.3
Hma1.2p1_0222F.1_g093870 Hydrangea macrophylla HOM05D005762 ORTHO05D006823 1.0e-65 253.8 192 72.4
Aqoxy6G02656 Aquilegia oxysepala HOM05D005762 ORTHO05D006823 8.6e-65 250.8 194 69.1
Lsat_1_v5_gn_7_49601 Lactuca sativa HOM05D005762 ORTHO05D006823 1.1e-64 250.4 191 71.7
VMungo1215G2009 Vigna mungo HOM05D005762 ORTHO05D006823 1.9e-64 249.6 243 60.1
Haze_19144 Corylus avellana HOM05D005762 ORTHO05D006823 2.5e-64 249.2 187 72.2
QL02p094110 Quercus lobata HOM05D005762 ORTHO05D006823 4.3e-64 248.4 191 71.2
Sopen04g027270 Solanum pennellii HOM05D005762 ORTHO05D006823 4.7e-63 245.0 190 70.5
PGSC0003DMG400024111 Solanum tuberosum HOM05D005762 ORTHO05D006823 6.2e-63 244.6 190 70.5
Rhsim01G0024500 Rhododendron simsii HOM05D005762 ORTHO05D006823 1.1e-62 243.8 188 71.8
Solyc04g071310.3 Solanum lycopersicum HOM05D005762 ORTHO05D006823 1.1e-62 243.8 190 70.5
Ciclev10009604m.g Citrus clementina HOM05D005762 ORTHO05D006823 1.4e-62 243.4 191 68.6
FvH4_1g00560 Fragaria vesca HOM05D005762 ORTHO05D006823 1.4e-62 243.4 189 71.4
Psat1g057520 Pisum sativum HOM05D005762 ORTHO05D006823 1.5e-61 240.0 192 71.9
Nitab4.5_0000032g0060 Nicotiana tabacum HOM05D005762 ORTHO05D006823 4.4e-61 238.4 190 70.0
PGR102G1062 Punica granatum HOM05D005762 ORTHO05D006823 4.4e-61 238.4 191 68.1
Peaxi162Scf00765g00313 Petunia axillaris HOM05D005762 ORTHO05D006823 7.6e-61 237.7 191 70.2
HanXRQChr03g0066031 Helianthus annuus HOM05D005762 ORTHO05D006823 1.3e-60 236.9 192 67.7
HanXRQChr09g0244521 Helianthus annuus HOM05D005762 ORTHO05D006823 1.3e-60 236.9 190 67.9
PSO761G0310 Papaver somniferum HOM05D005762 ORTHO05D006823 1.3e-60 236.9 195 69.7
FAN26G0640 Fragaria x ananassa HOM05D005762 ORTHO05D006823 2.2e-60 236.1 189 69.8
MBI02_g32399_MAGBIO Magnolia biondii HOM05D005762 ORTHO05D006823 1.4e-59 233.4 198 68.2
DCAR_014801 Daucus carota HOM05D005762 ORTHO05D006823 4.2e-59 231.9 188 65.4
Nn8g40046 Nelumbo nucifera HOM05D005762 ORTHO05D006823 4.2e-59 231.9 184 71.2
Potri.006G180900 Populus trichocarpa HOM05D005762 ORTHO05D006823 4.2e-59 231.9 188 66.0
MD15G1148500 Malus domestica HOM05D005762 ORTHO05D006823 7.1e-59 231.1 194 67.0
CAN.G268.6 Capsicum annuum HOM05D005762 ORTHO05D006823 1.2e-58 230.3 190 68.9
RcHm_v2.0_Chr2g0085191 Rosa chinensis HOM05D005762 ORTHO05D006823 4.6e-58 228.4 191 69.6
HPP92_021390 Vanilla planifolia HOM05D005762 ORTHO05D006823 7.8e-58 227.6 198 66.2
TPR.G14135 Trifolium pratense HOM05D005762 ORTHO05D006823 1.3e-57 226.9 190 70.0
Medtr6g006900 Medicago truncatula HOM05D005762 ORTHO05D006823 3.0e-57 225.7 190 70.0
SalBow7G3475 Salvia bowleyana HOM05D005762 ORTHO05D006823 3.0e-57 225.7 191 66.5
Ca_04188_v3 Cicer arietinum L. HOM05D005762 ORTHO05D006823 3.9e-57 225.3 190 67.9
Cc00_g06610 Coffea canephora HOM05D005762 ORTHO05D006823 3.9e-57 225.3 195 66.2
Lj2g0017040 Lotus japonicus HOM05D005762 ORTHO05D006823 3.9e-57 225.3 181 71.3
Sabra06G0137900 Salix brachista HOM05D005762 ORTHO05D006823 5.1e-57 224.9 191 63.9
Actinidia24370 Actinidia chinensis HOM05D000058 ORTHO05D000077 8.7e-57 224.2 195 66.7
DCAR_019992 Daucus carota HOM05D005762 ORTHO05D006823 8.7e-57 224.2 188 62.8
Cpa.g.sc199.22 Carica papaya HOM05D005762 ORTHO05D006823 4.3e-56 221.9 176 68.8
SGA_v2.0_scaffold118G32537 Striga asiatica HOM05D005762 ORTHO05D006823 1.3e-55 220.3 192 65.6
MSTRG.25456 Avicennia marina HOM05D005762 ORTHO05D006823 1.6e-55 219.9 195 66.2
CANSAT11G0529 Cannabis sativa HOM05D005762 ORTHO05D006823 2.1e-55 219.5 192 65.6
Potri.018G103200 Populus trichocarpa HOM05D005762 ORTHO05D006823 2.8e-55 219.2 191 65.4
ATR0767G248 Amborella trichopoda HOM05D005762 ORTHO05D006823 4.8e-55 218.4 197 64.5
THA.LOC104814737 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 6.2e-55 218.0 191 61.3
CSS0036647 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 1.4e-54 216.9 183 67.2
Sabra18G0088700 Salix brachista HOM05D000058 ORTHO05D000077 4.4e-53 211.8 169 66.9
PSO357G0319 Papaver somniferum HOM05D005762 ORTHO05D006823 9.9e-53 210.7 193 62.7
PSO170G6399 Papaver somniferum HOM05D005762 ORTHO05D006823 8.4e-52 207.6 193 62.2
vmacro06054 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 8.4e-52 207.6 195 64.6
CDE02G2562 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 1.4e-51 206.8 194 61.3
Migut.C01281 Erythranthe guttata HOM05D005762 ORTHO05D006823 3.2e-51 205.7 191 62.8
Sp7g28690 Schrenkiella parvula HOM05D005762 ORTHO05D006823 2.7e-50 202.6 192 57.3
CDE06G1965 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 1.7e-49 199.9 197 60.4
BcaB03g12662 Brassica carinata HOM05D005762 ORTHO05D006823 2.3e-49 199.5 192 57.8
CSS0014952 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 1.5e-48 196.8 190 62.1
Os11g0473100 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 1.5e-48 196.8 186 61.3
Dinv41344 Davidia involucrata HOM05D005762 ORTHO05D006823 5.6e-48 194.9 146 73.3
ECA240G2400 Erigeron canadensis HOM05D006258 ORTHO05D007961 5.6e-48 194.9 174 62.1
unitig_0.g206 Utricularia gibba HOM05D005762 ORTHO05D006823 9.6e-48 194.1 191 58.6
CARHR238660 Cardamine hirsuta HOM05D005762 ORTHO05D006823 8.1e-47 191.0 189 54.5
Os06g0171700 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 1.1e-46 190.7 199 56.8
Zm00001eb215170 Zea mays HOM05D005762 ORTHO05D006823 1.8e-46 189.9 189 59.3
Zm00001eb375400 Zea mays HOM05D005762 ORTHO05D006823 1.8e-46 189.9 189 59.3
unitig_60.g25712 Utricularia gibba HOM05D005762 ORTHO05D006823 6.9e-46 188.0 188 58.0
AT4G30820 Arabidopsis thaliana HOM05D005762 ORTHO05D006823 2.6e-45 186.0 192 55.7
SEGI_01916 Sequoiadendron giganteum HOM05D005762 ORTHO05D006823 3.4e-45 185.7 192 57.8
Lj9A721G60 Lonicera japonica HOM05D005762 ORTHO05D006823 8.4e-44 181.0 147 69.4
Carub.0007s0975 Capsella rubella HOM05D005762 ORTHO05D006823 7.1e-43 177.9 191 53.9
SGA_v2.0_scaffold69G23111 Striga asiatica HOM05D005762 ORTHO05D006823 7.1e-43 177.9 213 54.0
BraA08t33867Z Brassica rapa HOM05D005762 ORTHO05D006823 9.3e-43 177.6 193 54.9
BcaNung02738 Brassica carinata HOM05D005762 ORTHO05D006823 4.6e-42 175.3 204 49.5
C03p88490 Brassica napus HOM05D005762 ORTHO05D006823 1.3e-41 173.7 189 54.5
Mapoly0025s0086 Marchantia polymorpha HOM05D005762 ORTHO05D006823 3.0e-41 172.6 189 51.3
BcaNung01558 Brassica carinata HOM05D005762 ORTHO05D006823 3.7e-39 165.6 210 46.2
SHI02837 Sapria himalayana HOM05D005762 ORTHO05D006823 6.2e-39 164.9 193 51.3
C07p58230 Brassica napus HOM05D000058 ORTHO05D000077 3.1e-38 162.5 188 47.9
BolC7t46281H Brassica oleracea HOM05D000058 ORTHO05D000077 3.1e-38 162.5 188 47.9
Rhsim03G0259100 Rhododendron simsii HOM05D005762 ORTHO05D006823 3.1e-38 162.5 146 64.4
AagrBONN_evm.TU.Sc2ySwM_344.3285 Anthoceros agrestis HOM05D005762 ORTHO05D006823 4.0e-38 162.2 190 50.5
BcaC01g01136 Brassica carinata HOM05D005762 ORTHO05D006823 4.0e-38 162.2 189 50.8
A08p19060 Brassica napus HOM05D005762 ORTHO05D006823 6.9e-38 161.4 221 46.6
Cfa020788 Carpinus fangiana HOM05D005762 ORTHO05D006823 5.8e-37 158.3 112 76.8
Sc18g0003110 Simmondsia chinensis HOM05D005762 ORTHO05D006823 2.2e-36 156.4 148 66.2
A03p60360 Brassica napus HOM05D005762 ORTHO05D006823 3.2e-35 152.5 188 46.3
Pp3c7_18190 Physcomitrium patens HOM05D005762 ORTHO05D006823 7.1e-35 151.4 186 49.5
SMO356G0316 Selaginella moellendorffii HOM05D005762 ORTHO05D006823 5.1e-33 145.2 190 46.8
THA.LOC104804493 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 6.7e-33 144.8 139 58.3
BraA03t15075Z Brassica rapa HOM05D005762 ORTHO05D006823 3.1e-30 136.0 166 48.2
CBR_g45648 Chara braunii HOM05D005762 ORTHO05D006823 5.3e-30 135.2 203 44.8
AL7G21310 Arabidopsis lyrata HOM05D005762 ORTHO05D006823 1.0e-28 131.0 147 53.7
Oeu026957.1 Olea europaea HOM05D005762 ORTHO05D006823 2.9e-28 129.4 132 62.1
Thhalv10026542m.g Eutrema salsugineum HOM05D005762 ORTHO05D006823 3.2e-27 125.9 146 51.4
vmacro13053 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 1.6e-26 123.6 74 87.8
AUR62025367 Chenopodium quinoa HOM05D005762 ORTHO05D006823 2.3e-25 119.8 83 77.1
EL10Ac8g18914 Beta vulgaris HOM05D005762 ORTHO05D006823 3.9e-25 119.0 83 77.1
AUR62028383 Chenopodium quinoa HOM05D005762 ORTHO05D006823 5.1e-25 118.6 83 75.9
BolC3t21157H Brassica oleracea HOM05D005762 ORTHO05D006823 7.4e-24 114.8 154 48.1
CsaV3_1G029180 Cucumis sativus L. HOM05D005762 ORTHO05D006823 6.3e-23 111.7 59 96.6
CBR_g3032 Chara braunii HOM05D005762 ORTHO05D006823 2.0e-21 106.7 89 60.7
Dinv09756 Davidia involucrata HOM05D000667 ORTHO05D002614 2.0e-21 106.7 88 63.6
vmacro13054 Vaccinium macrocarpon HOM05D006258 ORTHO05D007961 5.5e-19 98.6 83 62.7
Rhsim01G0060600 Rhododendron simsii HOM05D005762 ORTHO05D006823 3.6e-18 95.9 103 61.2
SGA_v2.0_scaffold63G21769 Striga asiatica HOM05D005762 ORTHO05D006823 7.9e-18 94.7 125 49.6
SMO004G0001 Selaginella moellendorffii HOM05D028982 ORTHO05D006823 1.4e-17 94.0 109 48.6
Nitab4.5_0008759g0010 Nicotiana tabacum HOM05D005762 ORTHO05D006823 6.7e-17 91.7 81 60.5
PSO357G0231 Papaver somniferum HOM05D005762 ORTHO05D006823 3.3e-16 89.4 131 44.3
MCO02G015 Micromonas commoda HOM05D005762 ORTHO05D006823 1.8e-14 83.6 96 50.0
Oeu064081.1 Olea europaea HOM05D005762 ORTHO05D006823 3.1e-14 82.8 57 80.7
Aa31LG2G19570 Aethionema arabicum HOM05D005762 ORTHO05D006823 2.9e-12 76.3 92 46.7
Cre16.g672753 Chlamydomonas reinhardtii HOM05D005762 ORTHO05D006823 1.4e-11 73.9 181 31.5
CiPaw.15G164900 Carya illinoinensis HOM05D005762 ORTHO05D006823 1.9e-11 73.6 85 52.9
MD02G1004700 Malus domestica HOM05D005762 ORTHO05D006823 6.7e-09 65.1 58 58.6
Actinidia26604 Actinidia chinensis HOM05D005762 ORTHO05D006823 1.8e-06 57.0 76 50.0


User provided reference genes

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