Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG00G002210 Citrullus lanatus HOM05D006224 ORTHO05D007691 2.2e-221 771.9 376 100.0
ClCG06G010410 Citrullus lanatus HOM05D006224 ORTHO05D007691 2.2e-221 771.9 376 100.0
ClCG06G010400 Citrullus lanatus HOM05D006224 ORTHO05D007691 1.3e-168 596.7 374 78.6
Sed0009228 Sechium edule HOM05D006224 ORTHO05D007691 3.7e-168 595.1 375 80.3
MELO3C025318.2 Cucumis melo HOM05D006224 ORTHO05D007691 2.5e-164 582.4 374 77.0
CsaV3_1G030820 Cucumis sativus L. HOM05D006224 ORTHO05D007691 1.7e-160 569.7 374 76.2
ClCG00G002580 Citrullus lanatus HOM05D006224 ORTHO05D007691 1.1e-159 567.0 372 75.5
Cfa003290 Carpinus fangiana HOM05D006224 ORTHO05D007691 3.3e-140 502.3 373 67.0
QL02p086023 Quercus lobata HOM05D006224 ORTHO05D007691 1.4e-138 496.9 363 66.9
QL02p086060 Quercus lobata HOM05D006224 ORTHO05D007691 3.1e-138 495.7 372 66.1
MD15G1189600 Malus domestica HOM05D006224 ORTHO05D007691 5.2e-138 495.0 325 71.7
TAR383G0021 Trochodendron aralioides HOM05D006224 ORTHO05D007691 2.2e-136 489.6 381 64.0
Manes.16G071100 Manihot esculenta HOM05D006224 ORTHO05D007691 3.2e-135 485.7 375 62.7
FAN23G1546 Fragaria x ananassa HOM05D006224 ORTHO05D007691 4.6e-134 481.9 347 66.3
Ciclev10008608m.g Citrus clementina HOM05D006224 ORTHO05D007691 7.8e-134 481.1 381 63.0
Dinv41578 Davidia involucrata HOM05D006224 ORTHO05D007691 1.7e-133 479.9 369 63.7
FvH4_1g05360 Fragaria vesca HOM05D006224 ORTHO05D007691 2.3e-133 479.6 353 66.6
RcHm_v2.0_Chr2g0091041 Rosa chinensis HOM05D006224 ORTHO05D007691 3.9e-133 478.8 342 68.1
FAN19G0264 Fragaria x ananassa HOM05D006224 ORTHO05D007691 8.6e-133 477.6 367 63.8
Atru.chr7.1298 Acer truncatum HOM05D006224 ORTHO05D007691 7.3e-132 474.6 323 67.8
Haze_25683 Corylus avellana HOM05D006224 ORTHO05D007691 9.5e-132 474.2 372 64.0
FAN26G2363 Fragaria x ananassa HOM05D006224 ORTHO05D007691 9.5e-132 474.2 362 63.5
Eucgr.E02819 Eucalyptus grandis HOM05D006224 ORTHO05D007691 1.6e-131 473.4 327 69.7
CiPaw.03G235000 Carya illinoinensis HOM05D006224 ORTHO05D007691 2.1e-131 473.0 346 67.9
Thecc.09G114600 Theobroma cacao HOM05D006224 ORTHO05D007691 3.1e-130 469.2 368 62.8
TWI34G0303 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 4.0e-130 468.8 355 63.9
Cpa.g.sc23.139 Carica papaya HOM05D006224 ORTHO05D007691 4.4e-129 465.3 370 62.7
GSVIVG01015429001 Vitis vinifera HOM05D006224 ORTHO05D007691 5.8e-129 464.9 356 63.8
CANSAT56G1593 Cannabis sativa HOM05D006224 ORTHO05D007691 1.3e-128 463.8 325 68.3
GSVIVG01015431001 Vitis vinifera HOM05D006224 ORTHO05D007691 1.3e-128 463.8 366 63.4
Actinidia07421 Actinidia chinensis HOM05D006224 ORTHO05D007691 4.9e-128 461.8 374 61.8
CANSAT56G0016 Cannabis sativa HOM05D006224 ORTHO05D007691 6.4e-128 461.5 325 68.3
Gorai.004G279400 Gossypium raimondii HOM05D006224 ORTHO05D007691 4.1e-127 458.8 341 64.5
Gohir.D08G261300 Gossypium hirsutum HOM05D006224 ORTHO05D007691 9.2e-127 457.6 341 64.2
Nitab4.5_0013433g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 3.5e-126 455.7 323 68.7
Ciclev10008605m.g Citrus clementina HOM05D006224 ORTHO05D007691 4.6e-126 455.3 376 59.8
Lsat_1_v5_gn_8_94740 Lactuca sativa HOM05D006224 ORTHO05D007691 6.6e-125 451.4 382 59.7
FAN28G2414 Fragaria x ananassa HOM05D006224 ORTHO05D007691 8.6e-125 451.1 317 68.5
Lj2g0020407 Lotus japonicus HOM05D006224 ORTHO05D007691 8.6e-125 451.1 320 68.8
Gohir.A08G240600 Gossypium hirsutum HOM05D006224 ORTHO05D007691 1.1e-124 450.7 342 63.7
Nitab4.5_0002361g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 3.3e-124 449.1 323 67.5
Cc06_g09350 Coffea canephora HOM05D006224 ORTHO05D007691 4.3e-124 448.7 323 65.6
PSO782G3139 Papaver somniferum HOM05D006224 ORTHO05D007691 4.3e-124 448.7 363 61.2
Hund26119 Selenicereus undatus HOM05D006224 ORTHO05D007691 5.6e-124 448.4 371 60.9
Lalb_Chr14g0371331 Lupinus albus HOM05D006224 ORTHO05D007691 7.3e-124 448.0 366 62.3
PSO063G0773 Papaver somniferum HOM05D006224 ORTHO05D007691 7.3e-124 448.0 326 65.0
Migut.K00473 Erythranthe guttata HOM05D006224 ORTHO05D007691 1.2e-123 447.2 335 65.4
PGR042G0994 Punica granatum HOM05D006224 ORTHO05D007691 1.6e-123 446.8 400 58.5
Glyma.09G187600 Glycine max HOM05D006224 ORTHO05D007691 2.1e-123 446.4 341 64.2
Glyma.18G076000 Glycine max HOM05D006224 ORTHO05D007691 2.1e-123 446.4 340 65.3
TWI34G1467 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 3.6e-123 445.7 347 62.2
Duzib187G0885 Durio zibethinus HOM05D006224 ORTHO05D007691 6.2e-123 444.9 362 62.7
HanXRQChr05g0138301 Helianthus annuus HOM05D006224 ORTHO05D007691 8.1e-123 444.5 314 67.5
Solyc07g009170.4 Solanum lycopersicum HOM05D006224 ORTHO05D007691 1.4e-122 443.7 326 66.9
Sopen07g017160 Solanum pennellii HOM05D006224 ORTHO05D007691 3.1e-122 442.6 326 66.3
vmacro06195 Vaccinium macrocarpon HOM05D006224 ORTHO05D007691 4.0e-122 442.2 355 62.8
PGSC0003DMG400024204 Solanum tuberosum HOM05D006224 ORTHO05D007691 5.2e-122 441.8 326 66.6
VMungo0464G0392 Vigna mungo HOM05D006224 ORTHO05D007691 6.8e-122 441.4 369 60.7
DCAR_010440 Daucus carota HOM05D006224 ORTHO05D007691 1.2e-121 440.7 316 66.5
MBI06_g04550_MAGBIO Magnolia biondii HOM05D006224 ORTHO05D007691 4.4e-121 438.7 359 60.2
arahy.Tifrunner.gnm1.ann1.X15ZNM Arachis hypogaea HOM05D006224 ORTHO05D007691 5.8e-121 438.3 348 61.8
Phvul.004G160700 Phaseolus vulgaris HOM05D006224 ORTHO05D007691 3.7e-120 435.6 370 61.1
Potri.006G157700 Populus trichocarpa HOM05D006224 ORTHO05D007691 4.9e-120 435.3 328 65.2
FAN26G3318 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.1e-119 434.1 376 58.8
Medtr6g086510 Medicago truncatula HOM05D006224 ORTHO05D007691 1.4e-119 433.7 348 61.2
Rhsim03G0244800 Rhododendron simsii HOM05D006224 ORTHO05D007691 1.9e-119 433.3 399 55.6
AUR62011028 Chenopodium quinoa HOM05D006224 ORTHO05D007691 3.2e-119 432.6 389 57.6
arahy.Tifrunner.gnm1.ann1.NKB3PQ Arachis hypogaea HOM05D006224 ORTHO05D007691 4.1e-119 432.2 350 61.4
Thhalv10013889m.g Eutrema salsugineum HOM05D006224 ORTHO05D007691 4.1e-119 432.2 355 61.1
Aa31LG11G5060 Aethionema arabicum HOM05D006224 ORTHO05D007691 2.7e-118 429.5 320 63.8
ATR0037G051 Amborella trichopoda HOM05D006224 ORTHO05D007691 2.3e-117 426.4 331 60.4
Ca_30117_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 2.3e-117 426.4 332 63.6
HPP92_009101 Vanilla planifolia HOM05D006224 ORTHO05D007691 8.6e-117 424.5 317 62.1
Sc08g0007140 Simmondsia chinensis HOM05D006224 ORTHO05D007691 1.9e-116 423.3 355 59.7
Zm00001eb309830 Zea mays HOM05D006224 ORTHO05D007691 2.5e-116 422.9 339 61.4
Aqoxy5G03788 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 9.6e-116 421.0 358 58.9
BolC9t58538H Brassica oleracea HOM05D006224 ORTHO05D007691 2.1e-115 419.9 340 60.0
EL10Ac8g18541 Beta vulgaris HOM05D006224 ORTHO05D007691 2.8e-115 419.5 374 56.4
AT5G19460 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 3.6e-115 419.1 320 63.1
Peaxi162Scf00560g00629 Petunia axillaris HOM05D006224 ORTHO05D007691 8.1e-115 417.9 360 59.4
Carub.0006s1780 Capsella rubella HOM05D006224 ORTHO05D007691 2.4e-114 416.4 326 62.0
SalBow1G0968 Salvia bowleyana HOM05D006224 ORTHO05D007691 3.1e-114 416.0 350 58.6
CDE04G0176 Ceratophyllum demersum HOM05D006224 ORTHO05D007691 5.2e-114 415.2 362 56.9
AL6G30950 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 8.9e-114 414.5 380 56.6
CSS0033373 Camellia sinensis var. sinensis HOM05D006224 ORTHO05D007691 5.8e-113 411.8 387 56.3
Psat1g037920 Pisum sativum HOM05D006224 ORTHO05D007691 1.9e-111 406.8 297 67.3
Oeu060631.1 Olea europaea HOM05D006224 ORTHO05D007691 4.2e-111 405.6 356 59.3
Aqoxy5G03790 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 5.4e-111 405.2 361 54.8
Sp6g24950 Schrenkiella parvula HOM05D006224 ORTHO05D007691 1.6e-110 403.7 370 56.2
ECA236G3755 Erigeron canadensis HOM05D006224 ORTHO05D007691 1.1e-108 397.5 274 69.3
CAN.G929.19 Capsicum annuum HOM05D006224 ORTHO05D007691 9.6e-108 394.4 272 69.1
AL6G30960 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 2.8e-107 392.9 313 59.4
Sabra06G0124600 Salix brachista HOM05D006224 ORTHO05D007691 8.1e-107 391.3 353 58.4
AT5G19470 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 1.8e-106 390.2 313 59.4
Ca_25513_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 1.8e-106 390.2 276 68.1
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 4.0e-106 389.0 366 56.0
SGA_v2.0_scaffold23G10152 Striga asiatica HOM05D006224 ORTHO05D007691 1.2e-105 387.5 317 60.6
THA.LOC104799742 Tarenaya hassleriana HOM05D006224 ORTHO05D007691 1.5e-105 387.1 274 65.3
C09p56840 Brassica napus HOM05D006224 ORTHO05D007691 2.2e-104 383.3 332 57.8
TPR.G31456 Trifolium pratense HOM05D006224 ORTHO05D007691 2.3e-101 373.2 313 61.3
TPR.G31453 Trifolium pratense HOM05D006224 ORTHO05D007691 1.5e-100 370.5 335 57.6
Nn8g39262 Nelumbo nucifera HOM05D006224 ORTHO05D007691 1.1e-98 364.4 373 51.5
Pp3c12_9090 Physcomitrium patens HOM05D006224 ORTHO05D007691 4.0e-98 362.5 298 59.4
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 1.0e-93 347.8 319 56.1
Peaxi162Scf00560g00615 Petunia axillaris HOM05D006224 ORTHO05D007691 4.3e-92 342.4 325 56.0
Lj7A644T17 Lonicera japonica HOM05D006224 ORTHO05D007691 8.1e-91 338.2 405 47.9
Mapoly0084s0007 Marchantia polymorpha HOM05D006224 ORTHO05D007691 1.4e-90 337.4 301 54.2
SMO347G0504 Selaginella moellendorffii HOM05D006224 ORTHO05D007691 2.0e-89 333.6 292 56.8
Potri.006G157800 Populus trichocarpa HOM05D006224 ORTHO05D007691 4.5e-89 332.4 353 51.6
Prupe.7G186600 Prunus persica HOM05D006224 ORTHO05D007691 1.1e-84 317.8 239 64.9
HanXRQChr05g0139161 Helianthus annuus HOM05D006224 ORTHO05D007691 1.4e-79 300.8 295 53.6
Cre13.g582201 Chlamydomonas reinhardtii HOM05D006224 ORTHO05D007691 7.9e-70 268.5 294 47.3
unitig_748.g7154 Utricularia gibba HOM05D006224 ORTHO05D007691 6.7e-69 265.4 247 53.8
AagrBONN_evm.TU.Sc2ySwM_228.2202 Anthoceros agrestis HOM05D006224 ORTHO05D007691 8.8e-69 265.0 211 60.7
Pp3c6_16000 Physcomitrium patens HOM05D006224 ORTHO05D007691 2.0e-68 263.8 294 45.9
AUR62033400 Chenopodium quinoa HOM05D006224 ORTHO05D007691 2.1e-62 243.8 288 47.2
Pp3c3_27400 Physcomitrium patens HOM05D006224 ORTHO05D007691 9.7e-60 235.0 287 39.4
MCO11G748 Micromonas commoda HOM05D006224 ORTHO05D007691 2.4e-58 230.3 285 43.5
PRCOL_00004258 Prasinoderma coloniale HOM05D006224 ORTHO05D007691 3.1e-50 203.4 288 41.3
CARHR193460 Cardamine hirsuta HOM05D006224 ORTHO05D007691 5.5e-47 192.6 127 68.5
Os09g0322200 Oryza sativa ssp. japonica HOM05D006224 ORTHO05D007691 8.8e-37 158.7 147 51.0
Ah.09g227190 Amaranthus hybridus HOM05D006224 ORTHO05D007691 1.1e-31 141.7 88 75.0
Cfa025487 Carpinus fangiana HOM05D006224 ORTHO05D007691 1.0e-29 135.2 199 39.7
unitig_748.g7155 Utricularia gibba HOM05D006224 ORTHO05D007691 1.4e-29 134.8 83 72.3
SEGI_32758 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 2.8e-22 110.5 71 67.6
MSTRG.26438 Avicennia marina HOM05D006224 ORTHO05D007691 3.7e-11 73.6 92 46.7
SEGI_12041 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 7.1e-10 69.3 64 56.2
vmacro11393 Vaccinium macrocarpon HOM05D003441 ORTHO05D004516 3.9e-08 63.5 42 64.3
SEGI_03040 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 7.3e-07 59.3 66 43.9


User provided reference genes

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