Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G009610 Citrullus lanatus HOM05D001784 ORTHO05D001699 6.9e-20 100.5 91 100.0
MELO3C005952.2 Cucumis melo HOM05D001784 ORTHO05D001699 1.3e-10 69.7 66 63.6
Sed0024606 Sechium edule HOM05D001784 ORTHO05D001699 2.2e-10 68.9 67 58.2
CsaV3_3G007330 Cucumis sativus L. HOM05D001784 ORTHO05D001699 5.0e-10 67.8 66 62.1
ClCG10G008620 Citrullus lanatus HOM05D001784 ORTHO05D001699 5.5e-09 64.3 107 68.2
Sabra02G0134500 Salix brachista HOM05D001784 ORTHO05D001699 9.4e-09 63.5 66 59.1
unitig_0.g319 Utricularia gibba HOM05D000482 ORTHO05D001699 9.4e-09 63.5 65 58.5
RcHm_v2.0_Chr1g0361051 Rosa chinensis HOM05D001784 ORTHO05D001699 1.2e-08 63.2 65 58.5
Duzib133G0245 Durio zibethinus HOM05D001784 ORTHO05D001699 1.6e-08 62.8 64 60.9
COL.COLO4_06206 Corchorus olitorius HOM05D000649 ORTHO05D000513 2.1e-08 62.4 64 59.4
Migut.J01342 Erythranthe guttata HOM05D001784 ORTHO05D001699 2.1e-08 62.4 67 53.7
Migut.J01343 Erythranthe guttata HOM05D001784 ORTHO05D001699 2.1e-08 62.4 67 53.7
Manes.15G027600 Manihot esculenta HOM05D001784 ORTHO05D001699 2.1e-08 62.4 66 57.6
FAN03G2828 Fragaria x ananassa HOM05D001413 ORTHO05D001385 2.7e-08 62.0 67 53.7
Gohir.A08G035000 Gossypium hirsutum HOM05D001784 ORTHO05D001699 2.7e-08 62.0 65 58.5
Atru.chr12.2411 Acer truncatum HOM05D001784 ORTHO05D001699 3.6e-08 61.6 65 53.8
MELO3C018985.2 Cucumis melo HOM05D001784 ORTHO05D001699 3.6e-08 61.6 107 71.0
CsaV3_1G000010 Cucumis sativus L. HOM05D001784 ORTHO05D001699 3.6e-08 61.6 107 71.0
Duzib068G1267 Durio zibethinus HOM05D001784 ORTHO05D001699 3.6e-08 61.6 67 53.7
Gorai.007G112800 Gossypium raimondii HOM05D001784 ORTHO05D001699 3.6e-08 61.6 65 58.5
PGR142G1485 Punica granatum HOM05D001784 ORTHO05D001699 3.6e-08 61.6 65 55.4
Duzib138G0036 Durio zibethinus HOM05D001784 ORTHO05D001699 4.7e-08 61.2 65 58.5
Migut.F00148 Erythranthe guttata HOM05D001784 ORTHO05D001699 4.7e-08 61.2 65 53.8
Migut.F00149 Erythranthe guttata HOM05D001784 ORTHO05D001699 4.7e-08 61.2 65 53.8
Gohir.D12G120000 Gossypium hirsutum HOM05D001784 ORTHO05D001699 4.7e-08 61.2 64 57.8
Duzib268G1156 Durio zibethinus HOM05D001784 ORTHO05D001699 6.1e-08 60.8 64 59.4
Gohir.A12G116500 Gossypium hirsutum HOM05D001784 ORTHO05D001699 6.1e-08 60.8 65 56.9
Gorai.008G130600 Gossypium raimondii HOM05D001784 ORTHO05D001699 6.1e-08 60.8 65 56.9
Sed0007280 Sechium edule HOM05D001784 ORTHO05D001699 6.1e-08 60.8 107 66.4
Sopen01g002170 Solanum pennellii HOM05D001784 ORTHO05D001699 6.1e-08 60.8 65 55.4
Atru.chr5.764 Acer truncatum HOM05D001784 ORTHO05D001699 7.9e-08 60.5 65 55.4
FvH4_7g32851 Fragaria vesca HOM05D001784 ORTHO05D001699 7.9e-08 60.5 67 52.2
FAN01G0875 Fragaria x ananassa HOM05D001784 ORTHO05D001699 7.9e-08 60.5 64 57.8
FAN06G1058 Fragaria x ananassa HOM05D001784 ORTHO05D001699 7.9e-08 60.5 64 57.8
FAN06G1225 Fragaria x ananassa HOM05D001784 ORTHO05D001699 7.9e-08 60.5 64 57.8
FAN10G0132 Fragaria x ananassa HOM05D001784 ORTHO05D001699 7.9e-08 60.5 64 57.8
FAN10G2299 Fragaria x ananassa HOM05D001784 ORTHO05D001699 7.9e-08 60.5 64 57.8
PGSC0003DMG400032190 Solanum tuberosum HOM05D001784 ORTHO05D001699 7.9e-08 60.5 107 70.1
TWI14G1364 Tripterygium wilfordii HOM05D001784 ORTHO05D001699 7.9e-08 60.5 65 53.8
Eucgr.E00482 Eucalyptus grandis HOM05D001784 ORTHO05D001699 1.0e-07 60.1 65 53.8
FvH4_7g17620 Fragaria vesca HOM05D001784 ORTHO05D001699 1.0e-07 60.1 64 56.2
Solyc01g006160.3 Solanum lycopersicum HOM05D001784 ORTHO05D001699 1.0e-07 60.1 65 53.8
SGA_v2.0_scaffold165G38183 Striga asiatica HOM05D001784 ORTHO05D001699 1.0e-07 60.1 65 55.4
SGA_v2.0_scaffold18G08469 Striga asiatica HOM05D001784 ORTHO05D001699 1.0e-07 60.1 67 52.2
unitig_60.g25634 Utricularia gibba HOM05D001784 ORTHO05D001699 1.0e-07 60.1 65 55.4
unitig_62.g23857 Utricularia gibba HOM05D001784 ORTHO05D001699 1.0e-07 60.1 65 56.9
Dinv34256 Davidia involucrata HOM05D001784 ORTHO05D001699 1.4e-07 59.7 65 53.8
ECA236G4233 Erigeron canadensis HOM05D001784 ORTHO05D001699 1.4e-07 59.7 65 53.8
Gohir.D08G045500 Gossypium hirsutum HOM05D001784 ORTHO05D001699 1.4e-07 59.7 65 56.9
Gorai.004G044400 Gossypium raimondii HOM05D001784 ORTHO05D001699 1.4e-07 59.7 65 56.9
MD07G1159200 Malus domestica HOM05D001784 ORTHO05D001699 1.4e-07 59.7 65 56.9
Nitab4.5_0000488g0060 Nicotiana tabacum HOM05D001784 ORTHO05D001699 1.4e-07 59.7 65 55.4
Prupe.2G197300 Prunus persica HOM05D001784 ORTHO05D001699 1.4e-07 59.7 65 56.9
Sabra12G0011900 Salix brachista HOM05D001413 ORTHO05D001385 1.4e-07 59.7 65 49.2
TWI59G0147 Tripterygium wilfordii HOM05D001784 ORTHO05D001699 1.4e-07 59.7 66 54.5
Gohir.A07G133900 Gossypium hirsutum HOM05D001784 ORTHO05D001699 1.8e-07 59.3 63 58.7
Gohir.D11G105500 Gossypium hirsutum HOM05D001784 ORTHO05D001699 1.8e-07 59.3 65 56.9
Sed0013707 Sechium edule HOM05D001784 ORTHO05D001699 1.8e-07 59.3 66 53.0
Eucgr.A01408 Eucalyptus grandis HOM05D001784 ORTHO05D001699 2.3e-07 58.9 65 52.3
Nitab4.5_0001568g0040 Nicotiana tabacum HOM05D001784 ORTHO05D001699 2.3e-07 58.9 65 52.3
PGR042G0196 Punica granatum HOM05D001784 ORTHO05D001699 2.3e-07 58.9 65 52.3
Rhsim03G0214800 Rhododendron simsii HOM05D001784 ORTHO05D001699 2.3e-07 58.9 65 55.4
PGSC0003DMG400023752 Solanum tuberosum HOM05D001784 ORTHO05D001699 2.3e-07 58.9 65 53.8
FAN01G0064 Fragaria x ananassa HOM05D001413 ORTHO05D001385 3.0e-07 58.5 66 51.5
FAN03G1785 Fragaria x ananassa HOM05D001784 ORTHO05D001699 3.0e-07 58.5 64 56.2
Nn3g19582 Nelumbo nucifera HOM05D001784 ORTHO05D001699 3.0e-07 58.5 66 54.5
Hund16750 Selenicereus undatus HOM05D001784 ORTHO05D001699 3.0e-07 58.5 65 50.8
Sc01g0002220 Simmondsia chinensis HOM05D001784 ORTHO05D001699 3.0e-07 58.5 67 52.2
Medtr8g024350 Medicago truncatula HOM05D001784 ORTHO05D001699 3.9e-07 58.2 107 59.8
Peaxi162Scf00441g00414 Petunia axillaris HOM05D001784 ORTHO05D001699 3.9e-07 58.2 65 53.8
Potri.002G179400 Populus trichocarpa HOM05D001784 ORTHO05D001699 3.9e-07 58.2 65 55.4
SalBow2G2430 Salvia bowleyana HOM05D001784 ORTHO05D001699 3.9e-07 58.2 65 53.8
SalBow4G3004 Salvia bowleyana HOM05D006192 ORTHO05D001699 3.9e-07 58.2 65 53.8
SalBow8G2153 Salvia bowleyana HOM05D001784 ORTHO05D001699 3.9e-07 58.2 65 53.8
Sopen01g030870 Solanum pennellii HOM05D001784 ORTHO05D001699 3.9e-07 58.2 65 52.3
unitig_64.g29778 Utricularia gibba HOM05D001784 ORTHO05D001699 3.9e-07 58.2 64 56.2
HPP92_008455 Vanilla planifolia HOM05D001784 ORTHO05D001699 3.9e-07 58.2 65 55.4
Ah.02g117500 Amaranthus hybridus HOM05D001784 ORTHO05D001699 5.1e-07 57.8 65 53.8
MSTRG.26974 Avicennia marina HOM05D001784 ORTHO05D001699 5.1e-07 57.8 66 51.5
Cpa.g.sc193.5 Carica papaya HOM05D001784 ORTHO05D001699 5.1e-07 57.8 65 52.3
SGA_v2.0_scaffold44G16848 Striga asiatica HOM05D001784 ORTHO05D001699 5.1e-07 57.8 65 52.3
CiPaw.02G048100 Carya illinoinensis HOM05D001784 ORTHO05D001699 6.7e-07 57.4 67 53.7
Eucgr.K00427 Eucalyptus grandis HOM05D001784 ORTHO05D001699 6.7e-07 57.4 65 52.3
Lsat_1_v5_gn_3_126460 Lactuca sativa HOM05D001784 ORTHO05D001699 6.7e-07 57.4 66 54.5
Solyc01g104370.4 Solanum lycopersicum HOM05D001784 ORTHO05D001699 6.7e-07 57.4 65 52.3
Sopen01g046810 Solanum pennellii HOM05D001784 ORTHO05D001699 6.7e-07 57.4 65 52.3
ECA234G3360 Erigeron canadensis HOM05D000818 ORTHO05D001324 8.8e-07 57.0 65 55.4
Potri.014G105400 Populus trichocarpa HOM05D001784 ORTHO05D001699 8.8e-07 57.0 65 53.8
THA.LOC104815135 Tarenaya hassleriana HOM05D001784 ORTHO05D001699 8.8e-07 57.0 66 50.0
TWI59G0640 Tripterygium wilfordii HOM05D001784 ORTHO05D001699 8.8e-07 57.0 66 51.5
Lsat_1_v5_gn_9_50080 Lactuca sativa HOM05D001784 ORTHO05D001699 1.1e-06 56.6 65 49.2
Manes.01G240101 Manihot esculenta HOM05D001784 ORTHO05D001699 1.1e-06 56.6 65 53.8
Peaxi162Scf00300g00832 Petunia axillaris HOM05D001784 ORTHO05D001699 1.1e-06 56.6 64 56.2
Prupe.2G318300 Prunus persica HOM05D001784 ORTHO05D001699 1.1e-06 56.6 66 51.5
Sabra15G0003200 Salix brachista HOM05D001413 ORTHO05D001385 1.1e-06 56.6 66 48.5
Solyc01g016470.3 Solanum lycopersicum HOM05D001784 ORTHO05D001699 1.1e-06 56.6 65 52.3
PGSC0003DMG400015998 Solanum tuberosum HOM05D001784 ORTHO05D001699 1.1e-06 56.6 65 50.8
SGA_v2.0_scaffold45G17213 Striga asiatica HOM05D013892 ORTHO05D402817 1.1e-06 56.6 53 66.0
HanXRQChr03g0093051 Helianthus annuus HOM05D001784 ORTHO05D001699 1.5e-06 56.2 65 55.4
Nitab4.5_0003819g0070 Nicotiana tabacum HOM05D001784 ORTHO05D001699 1.5e-06 56.2 65 49.2
QL09p007234 Quercus lobata HOM05D001784 ORTHO05D001699 1.5e-06 56.2 66 50.0
Thecc.01G333600 Theobroma cacao HOM05D001784 ORTHO05D001699 1.5e-06 56.2 65 50.8
CAN.G140.29 Capsicum annuum HOM05D001784 ORTHO05D001699 2.0e-06 55.8 65 52.3
CAN.G1577.2 Capsicum annuum HOM05D001784 ORTHO05D001699 2.0e-06 55.8 65 49.2
CARHR158420 Cardamine hirsuta HOM05D001784 ORTHO05D001699 2.0e-06 55.8 66 51.5
Gorai.001G150600 Gossypium raimondii HOM05D001784 ORTHO05D001699 2.0e-06 55.8 63 55.6
HanXRQChr09g0250721 Helianthus annuus HOM05D001784 ORTHO05D001699 2.0e-06 55.8 65 50.8
PSO782G5689 Papaver somniferum HOM05D001784 ORTHO05D001699 2.0e-06 55.8 66 50.0
Psat0s3561g0080 Pisum sativum HOM05D001784 ORTHO05D001699 2.0e-06 55.8 107 66.4
Cc02_g00860 Coffea canephora HOM05D001784 ORTHO05D001699 2.6e-06 55.5 65 50.8
HanXRQChr10g0305311 Helianthus annuus HOM05D001784 ORTHO05D001699 2.6e-06 55.5 65 49.2
MD05G1188200 Malus domestica HOM05D001784 ORTHO05D001699 2.6e-06 55.5 66 50.0
Sopen03g022100 Solanum pennellii HOM05D001784 ORTHO05D001699 2.6e-06 55.5 67 52.2
AT5G24510 Arabidopsis thaliana HOM05D001784 ORTHO05D001699 3.3e-06 55.1 66 51.5
EL10Ac1g00188 Beta vulgaris HOM05D001784 ORTHO05D001699 3.3e-06 55.1 65 49.2
Ciclev10022792m.g Citrus clementina HOM05D001784 ORTHO05D001699 3.3e-06 55.1 62 53.2
Lsat_1_v5_gn_4_39701 Lactuca sativa HOM05D001784 ORTHO05D001699 3.3e-06 55.1 65 52.3
Nitab4.5_0002245g0150 Nicotiana tabacum HOM05D001784 ORTHO05D001699 3.3e-06 55.1 65 47.7
Hund27150 Selenicereus undatus HOM05D001784 ORTHO05D001699 3.3e-06 55.1 65 46.2
Sc23g0001800 Simmondsia chinensis HOM05D001784 ORTHO05D001699 3.3e-06 55.1 66 50.0
THA.LOC104798987 Tarenaya hassleriana HOM05D001784 ORTHO05D001699 3.3e-06 55.1 65 49.2
THA.LOC104803343 Tarenaya hassleriana HOM05D001784 ORTHO05D001699 3.3e-06 55.1 65 49.2
CSS0023769 Camellia sinensis var. sinensis HOM05D001784 ORTHO05D001699 4.4e-06 54.7 65 50.8
CSS0033013 Camellia sinensis var. sinensis HOM05D001784 ORTHO05D001699 4.4e-06 54.7 65 50.8
CAN.G303.12 Capsicum annuum HOM05D001784 ORTHO05D001699 4.4e-06 54.7 66 51.5
Nitab4.5_0004967g0010 Nicotiana tabacum HOM05D001784 ORTHO05D001699 4.4e-06 54.7 65 46.2
Nitab4.5_0009582g0010 Nicotiana tabacum HOM05D001784 ORTHO05D001699 4.4e-06 54.7 65 52.3
Oeu021655.1 Olea europaea HOM05D001784 ORTHO05D001699 4.4e-06 54.7 65 52.3
Oeu055386.1 Olea europaea HOM05D001784 ORTHO05D001699 4.4e-06 54.7 65 50.8
CAN.G39.10 Capsicum annuum HOM05D001784 ORTHO05D001699 5.7e-06 54.3 65 49.2
Duzib084G1446 Durio zibethinus HOM05D001784 ORTHO05D001699 5.7e-06 54.3 66 48.5
Sopen02g002360 Solanum pennellii HOM05D001784 ORTHO05D001699 5.7e-06 54.3 65 47.7
BcaC07g42369 Brassica carinata HOM05D001784 ORTHO05D001699 7.4e-06 53.9 65 49.2
CiPaw.06G041600 Carya illinoinensis HOM05D001784 ORTHO05D001699 7.4e-06 53.9 64 53.1
Cc06_g13350 Coffea canephora HOM05D001784 ORTHO05D001699 7.4e-06 53.9 66 50.0
Duzib205G0688 Durio zibethinus HOM05D001784 ORTHO05D001699 7.4e-06 53.9 65 50.8
Gohir.A09G186600 Gossypium hirsutum HOM05D001784 ORTHO05D001699 7.4e-06 53.9 65 49.2
Gohir.D09G181500 Gossypium hirsutum HOM05D001784 ORTHO05D001699 7.4e-06 53.9 65 49.2
Gorai.006G203500 Gossypium raimondii HOM05D001784 ORTHO05D001699 7.4e-06 53.9 65 49.2
HanXRQChr16g0519201 Helianthus annuus HOM05D001784 ORTHO05D001699 7.4e-06 53.9 65 53.8
CDE04G0844 Ceratophyllum demersum HOM05D001784 ORTHO05D001699 9.7e-06 53.5 65 50.8
Gohir.D07G138600 Gossypium hirsutum HOM05D001784 ORTHO05D001699 9.7e-06 53.5 63 54.0
MD05G1188300 Malus domestica HOM05D001784 ORTHO05D001699 9.7e-06 53.5 66 51.5
Peaxi162Scf00130g00044 Petunia axillaris HOM05D001784 ORTHO05D001699 9.7e-06 53.5 65 49.2
Potri.015G004700 Populus trichocarpa HOM05D001784 ORTHO05D001699 9.7e-06 53.5 66 45.5
RcHm_v2.0_Chr1g0382801 Rosa chinensis HOM05D001784 ORTHO05D001699 9.7e-06 53.5 66 48.5
Solyc03g082375.1 Solanum lycopersicum HOM05D001784 ORTHO05D001699 9.7e-06 53.5 58 55.2
TWI23G0426 Tripterygium wilfordii HOM05D001784 ORTHO05D001699 9.7e-06 53.5 65 50.8


User provided reference genes

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