Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G008620 Citrullus lanatus HOM05D006226 ORTHO05D007738 0.0e+00 1399.4 702 100.0
MELO3C024624.2 Cucumis melo HOM05D006226 ORTHO05D007738 0.0e+00 1226.8 708 87.4
Sed0016798 Sechium edule HOM05D006226 ORTHO05D007738 0.0e+00 1101.7 713 78.3
CsaV3_1G025440 Cucumis sativus L. HOM05D006226 ORTHO05D007738 7.4e-279 963.8 551 87.7
QL02p040023 Quercus lobata HOM05D006226 ORTHO05D007738 2.2e-243 845.9 649 65.2
GSVIVG01015381001 Vitis vinifera HOM05D006226 ORTHO05D007738 2.8e-233 812.4 715 58.3
CiPaw.03G218400 Carya illinoinensis HOM05D006226 ORTHO05D007738 4.7e-233 811.6 661 64.0
Cfa003249 Carpinus fangiana HOM05D006226 ORTHO05D007738 2.6e-231 805.8 709 59.0
Prupe.7G232400 Prunus persica HOM05D006226 ORTHO05D007738 3.1e-229 798.9 714 57.4
Ciclev10007624m.g Citrus clementina HOM05D006226 ORTHO05D007738 1.6e-225 786.6 718 57.2
FAN26G0472 Fragaria x ananassa HOM05D006226 ORTHO05D007738 8.9e-224 780.8 703 56.3
FvH4_1g04570 Fragaria vesca HOM05D006226 ORTHO05D007738 1.2e-223 780.4 703 56.5
RcHm_v2.0_Chr2g0090271 Rosa chinensis HOM05D006226 ORTHO05D007738 1.2e-223 780.4 704 57.4
FAN19G1825 Fragaria x ananassa HOM05D006226 ORTHO05D007738 9.8e-223 777.3 703 56.3
CANSAT56G2062 Cannabis sativa HOM05D006226 ORTHO05D007738 1.3e-222 776.9 715 56.6
MD15G1183800 Malus domestica HOM05D006226 ORTHO05D007738 2.4e-221 772.7 717 54.5
Manes.16G114900 Manihot esculenta HOM05D006226 ORTHO05D007738 7.0e-221 771.2 711 57.4
FAN23G2910 Fragaria x ananassa HOM05D006226 ORTHO05D007738 1.6e-220 770.0 684 56.6
Sabra18G0068600 Salix brachista HOM05D006226 ORTHO05D007738 1.6e-220 770.0 709 57.0
COL.COLO4_34848 Corchorus olitorius HOM05D006226 ORTHO05D007738 1.3e-219 766.9 691 57.3
Medtr6g087530 Medicago truncatula HOM05D006226 ORTHO05D007738 4.0e-216 755.4 714 55.7
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 5.2e-216 755.0 711 55.6
TPR.G10046 Trifolium pratense HOM05D006226 ORTHO05D007738 3.7e-214 748.8 647 58.4
Gorai.009G025300 Gossypium raimondii HOM05D006226 ORTHO05D007738 4.9e-214 748.4 717 56.1
Lj2g0027193 Lotus japonicus HOM05D006226 ORTHO05D007738 1.1e-213 747.3 644 59.0
Dinv36642 Davidia involucrata HOM05D006226 ORTHO05D007738 3.2e-213 745.7 614 61.2
Psat1g043440 Pisum sativum HOM05D006226 ORTHO05D007738 7.0e-213 744.6 660 57.9
arahy.Tifrunner.gnm1.ann1.ZKYF3I Arachis hypogaea HOM05D006226 ORTHO05D007738 1.0e-211 740.7 713 55.1
arahy.Tifrunner.gnm1.ann1.9IQ1SY Arachis hypogaea HOM05D006226 ORTHO05D007738 1.1e-210 737.3 713 55.0
Glyma.07G085400 Glycine max HOM05D006226 ORTHO05D007738 1.6e-209 733.4 719 54.7
Potri.018G081500 Populus trichocarpa HOM05D006226 ORTHO05D007738 1.6e-209 733.4 714 54.6
Rhsim01G0096900 Rhododendron simsii HOM05D006226 ORTHO05D007738 3.6e-209 732.3 720 54.7
Glyma.09G191500 Glycine max HOM05D006226 ORTHO05D007738 6.2e-209 731.5 723 54.6
Phvul.004G164600 Phaseolus vulgaris HOM05D006226 ORTHO05D007738 3.1e-208 729.2 646 58.7
Gohir.A05G023700 Gossypium hirsutum HOM05D006226 ORTHO05D007738 9.9e-207 724.2 716 54.2
Eucgr.C01033 Eucalyptus grandis HOM05D006226 ORTHO05D007738 2.3e-203 713.0 633 55.8
VMungo0464G1421 Vigna mungo HOM05D006226 ORTHO05D007738 9.5e-202 707.6 716 54.1
Cpa.g.sc23.97 Carica papaya HOM05D006226 ORTHO05D007738 1.6e-201 706.8 620 60.5
Aqoxy7G03848 Aquilegia oxysepala HOM05D006226 ORTHO05D007738 1.4e-200 703.7 656 55.9
AL3G40100 Arabidopsis lyrata HOM05D006226 ORTHO05D007738 6.8e-200 701.4 624 57.5
Lj7C652G7 Lonicera japonica HOM05D006226 ORTHO05D007738 9.9e-199 697.6 645 57.2
vmacro20706 Vaccinium macrocarpon HOM05D006226 ORTHO05D007738 1.3e-198 697.2 739 51.0
AT3G24560 Arabidopsis thaliana HOM05D006226 ORTHO05D007738 1.7e-198 696.8 663 55.4
Carub.0003s2495 Capsella rubella HOM05D006226 ORTHO05D007738 1.1e-197 694.1 650 54.6
PSO210G0226 Papaver somniferum HOM05D006226 ORTHO05D007738 4.6e-196 688.7 683 53.9
PSO210G1415 Papaver somniferum HOM05D006226 ORTHO05D007738 3.0e-195 686.0 685 54.0
PGR142G1694 Punica granatum HOM05D006226 ORTHO05D007738 3.0e-195 686.0 705 53.5
CARHR100790 Cardamine hirsuta HOM05D006226 ORTHO05D007738 3.9e-195 685.6 651 55.0
BcaC06g35722 Brassica carinata HOM05D006226 ORTHO05D007738 3.3e-194 682.6 650 54.9
BolC7t41639H Brassica oleracea HOM05D006226 ORTHO05D007738 3.3e-194 682.6 650 54.9
Sp3g22350 Schrenkiella parvula HOM05D006226 ORTHO05D007738 1.1e-192 677.6 650 53.7
Thhalv10002431m.g Eutrema salsugineum HOM05D006226 ORTHO05D007738 1.4e-192 677.2 652 54.6
C07p11670 Brassica napus HOM05D006226 ORTHO05D007738 4.4e-191 672.2 704 51.8
BcaB06g26659 Brassica carinata HOM05D006226 ORTHO05D007738 2.9e-190 669.5 705 51.6
Nitab4.5_0004070g0080 Nicotiana tabacum HOM05D006226 ORTHO05D007738 2.9e-190 669.5 663 51.6
BraA07t28567Z Brassica rapa HOM05D006226 ORTHO05D007738 3.8e-190 669.1 705 51.6
THA.LOC104808766 Tarenaya hassleriana HOM05D006226 ORTHO05D007738 3.8e-190 669.1 687 51.4
PGSC0003DMG400026545 Solanum tuberosum HOM05D006226 ORTHO05D007738 2.4e-189 666.4 642 53.4
AUR62010999 Chenopodium quinoa HOM05D006226 ORTHO05D007738 7.1e-189 664.8 655 53.9
HanXRQChr12g0354991 Helianthus annuus HOM05D006226 ORTHO05D007738 7.1e-189 664.8 650 52.0
Sc16g0007880 Simmondsia chinensis HOM05D006226 ORTHO05D007738 7.1e-189 664.8 669 52.6
AUR62021510 Chenopodium quinoa HOM05D006226 ORTHO05D007738 2.1e-188 663.3 661 53.1
Actinidia32679 Actinidia chinensis HOM05D006226 ORTHO05D007738 3.5e-188 662.5 617 55.8
FAN28G0796 Fragaria x ananassa HOM05D006226 ORTHO05D007738 3.9e-187 659.1 613 55.5
Sopen11g026750 Solanum pennellii HOM05D006226 ORTHO05D007738 8.7e-187 657.9 716 50.1
CAN.G644.14 Capsicum annuum HOM05D006226 ORTHO05D007738 5.6e-186 655.2 712 49.4
A07p07760 Brassica napus HOM05D006226 ORTHO05D007738 7.3e-186 654.8 727 50.1
Cc06_g09770 Coffea canephora HOM05D006226 ORTHO05D007738 1.5e-183 647.1 729 50.2
ECA233G1203 Erigeron canadensis HOM05D006226 ORTHO05D007738 1.9e-181 640.2 626 54.5
Nitab4.5_0006735g0020 Nicotiana tabacum HOM05D006226 ORTHO05D007738 9.6e-178 627.9 659 50.4
SalBow6G3053 Salvia bowleyana HOM05D006226 ORTHO05D007738 9.6e-178 627.9 651 52.2
Migut.C00317 Erythranthe guttata HOM05D006226 ORTHO05D007738 2.1e-177 626.7 669 51.4
DCAR_002532 Daucus carota HOM05D006226 ORTHO05D007738 2.4e-176 623.2 639 51.8
Migut.G00900 Erythranthe guttata HOM05D006226 ORTHO05D007738 3.5e-172 609.4 685 48.6
Lsat_1_v5_gn_8_3640 Lactuca sativa HOM05D006226 ORTHO05D007738 5.1e-171 605.5 663 50.4
Thecc.09G109000 Theobroma cacao HOM05D006226 ORTHO05D007738 6.7e-171 605.1 492 62.4
Aa31sc29G50 Aethionema arabicum HOM05D006226 ORTHO05D007738 9.6e-170 601.3 664 48.3
Atru.chr7.1363 Acer truncatum HOM05D006226 ORTHO05D007738 1.1e-165 587.8 484 61.8
Migut.K01516 Erythranthe guttata HOM05D006226 ORTHO05D007738 6.0e-164 582.0 664 48.0
Zm00001eb237720 Zea mays HOM05D006226 ORTHO05D007738 1.8e-160 570.5 655 46.3
SGA_v2.0_scaffold57G20229 Striga asiatica HOM05D006226 ORTHO05D007738 5.9e-159 565.5 673 46.5
Gohir.D05G025200 Gossypium hirsutum HOM05D006226 ORTHO05D007738 1.3e-158 564.3 528 56.6
CANSAT56G4481 Cannabis sativa HOM05D006226 ORTHO05D007738 1.2e-156 557.8 503 57.9
Hund09200 Selenicereus undatus HOM05D006226 ORTHO05D007738 6.3e-153 545.4 652 46.8
EL10Ac8g18501 Beta vulgaris HOM05D006226 ORTHO05D007738 2.1e-148 530.4 632 48.9
CSS0010508 Camellia sinensis var. sinensis HOM05D006226 ORTHO05D007738 4.4e-146 522.7 601 49.3
CSS0044649 Camellia sinensis var. sinensis HOM05D006226 ORTHO05D007738 7.2e-141 505.4 600 48.3
Ah.14g081980 Amaranthus hybridus HOM05D006226 ORTHO05D007738 9.7e-138 495.0 523 51.1
Nn8g39152 Nelumbo nucifera HOM05D006226 ORTHO05D007738 3.6e-132 476.5 345 67.2
Oeu002240.1 Olea europaea HOM05D006226 ORTHO05D007738 1.5e-130 471.1 489 50.5
Haze_25736 Corylus avellana HOM05D006226 ORTHO05D007738 2.4e-128 463.8 310 71.3
MBI04_g22018_MAGBIO Magnolia biondii HOM05D006226 ORTHO05D007738 3.5e-127 459.9 379 59.6
Lalb_Chr06g0174391 Lupinus albus HOM05D006226 ORTHO05D007738 7.7e-119 432.2 310 67.4
unitig_748.g7367 Utricularia gibba HOM05D006226 ORTHO05D007738 1.7e-110 404.4 645 39.2
ATR0315G013 Amborella trichopoda HOM05D006226 ORTHO05D007738 3.1e-99 367.1 306 60.1
Solyc11g067040.2 Solanum lycopersicum HOM05D006226 ORTHO05D007738 4.9e-97 359.8 346 54.9
Hma1.2p1_1463F.1_g285100 Hydrangea macrophylla HOM05D006226 ORTHO05D007738 1.9e-96 357.8 400 50.0
AagrBONN_evm.TU.Sc2ySwM_368.2586 Anthoceros agrestis HOM05D006226 ORTHO05D007738 7.8e-95 352.4 646 35.4
Mapoly0045s0077 Marchantia polymorpha HOM05D006226 ORTHO05D007738 1.2e-92 345.1 691 33.4
Peaxi162Scf01284g00025 Petunia axillaris HOM05D006226 ORTHO05D007738 6.2e-92 342.8 340 53.2
Peaxi162Scf01284g00019 Petunia axillaris HOM05D006226 ORTHO05D007738 5.8e-82 309.7 374 45.2
Solyc11g067030.2 Solanum lycopersicum HOM05D006226 ORTHO05D007738 1.9e-80 304.7 372 44.4
Lalb_Chr06g0174401 Lupinus albus HOM05D006226 ORTHO05D007738 4.3e-77 293.5 323 47.4
ECA234G2375 Erigeron canadensis HOM05D006226 ORTHO05D007738 6.2e-76 289.7 604 32.6
SMO170G0077 Selaginella moellendorffii HOM05D006226 ORTHO05D007738 2.9e-73 280.8 659 31.0
Pp3c5_3840 Physcomitrium patens HOM05D006226 ORTHO05D007738 3.6e-68 263.8 555 31.7
Hma1.2p1_1463F.1_g285110 Hydrangea macrophylla HOM05D006226 ORTHO05D007738 3.5e-63 247.3 307 47.6
MBI04_g29967_MAGBIO Magnolia biondii HOM05D006226 ORTHO05D007738 3.7e-60 237.3 403 39.2
CDE04G3650 Ceratophyllum demersum HOM05D001758 ORTHO05D005969 1.0e-49 202.6 200 51.5
ATR0315G018 Amborella trichopoda HOM05D006226 ORTHO05D007738 1.8e-46 191.8 328 36.0
CANSAT56G3567 Cannabis sativa HOM05D006226 ORTHO05D007738 2.5e-45 188.0 187 55.1
SGA_v2.0_scaffold88G27188 Striga asiatica HOM05D006226 ORTHO05D007738 2.2e-41 174.9 216 43.5
Nitab4.5_0004070g0110 Nicotiana tabacum HOM05D006226 ORTHO05D007738 8.8e-38 162.9 251 38.2
SGA_v2.0_scaffold3110G54276 Striga asiatica HOM05D006226 ORTHO05D007738 1.1e-37 162.5 133 57.9
CBR_g23439 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-36 158.3 243 39.9
Os02g0266500 Oryza sativa ssp. japonica HOM05D006226 ORTHO05D007738 2.2e-36 158.3 123 61.0
Nitab4.5_0004070g0120 Nicotiana tabacum HOM05D006226 ORTHO05D007738 7.4e-29 133.3 191 41.4
SEGI_09304 Sequoiadendron giganteum HOM05D006226 ORTHO05D007738 5.9e-26 123.6 144 41.0
HanXRQChr00c0062g0571541 Helianthus annuus HOM05D006226 ORTHO05D007738 4.2e-24 117.5 162 40.1
Lsat_1_v5_gn_4_168221 Lactuca sativa HOM05D006226 ORTHO05D007738 1.3e-20 105.9 156 41.0
HPP92_005262 Vanilla planifolia HOM05D006226 ORTHO05D007738 9.1e-19 99.8 81 63.0
SEGI_25817 Sequoiadendron giganteum HOM05D006226 ORTHO05D007738 6.5e-17 93.6 78 55.1
Actinidia07412 Actinidia chinensis HOM05D006226 ORTHO05D007738 7.2e-16 90.1 54 74.1
CDE04G0435 Ceratophyllum demersum HOM05D006226 ORTHO05D007738 8.0e-15 86.7 174 32.2
HanXRQChr00c0062g0571551 Helianthus annuus HOM05D006226 ORTHO05D007738 2.0e-13 82.0 114 40.4
MCO09G126 Micromonas commoda HOM05D006226 ORTHO05D007738 9.7e-13 79.7 217 30.4
Medtr6g087540 Medicago truncatula HOM05D006226 ORTHO05D007738 2.2e-09 68.6 134 35.8
Pp3c24_3750 Physcomitrium patens HOM05D028917 ORTHO05D023487 2.2e-09 68.6 299 23.4
PRCOL_00000419 Prasinoderma coloniale HOM05D006226 ORTHO05D023487 2.5e-08 65.1 220 25.0
AagrBONN_evm.TU.Sc2ySwM_362.2567 Anthoceros agrestis HOM05D028917 ORTHO05D023487 3.6e-07 61.2 153 30.1
HPP92_005261 Vanilla planifolia HOM05D006226 ORTHO05D007738 3.6e-07 61.2 76 39.5


User provided reference genes

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