Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G007360 Citrullus lanatus HOM05D000032 ORTHO05D024695 5.5e-105 384.4 210 100.0
MELO3C023052.2 Cucumis melo HOM05D000032 ORTHO05D008248 4.1e-76 288.5 197 84.3
CsaV3_2G012320 Cucumis sativus L. HOM05D000032 ORTHO05D008248 1.7e-74 283.1 198 82.8
Sed0024548 Sechium edule HOM05D000032 ORTHO05D008248 5.8e-54 214.9 197 66.5
Potri.010G063600 Populus trichocarpa HOM05D000032 ORTHO05D008248 6.1e-19 98.6 76 67.1
Ca_03626_v3 Cicer arietinum L. HOM05D000032 ORTHO05D008248 1.0e-18 97.8 121 48.8
Glyma.07G074800 Glycine max HOM05D000032 ORTHO05D008248 1.8e-18 97.1 84 63.1
VMungo0331G1285 Vigna mungo HOM05D000032 ORTHO05D008248 1.8e-18 97.1 78 66.7
Nn1g03022 Nelumbo nucifera HOM05D000032 ORTHO05D008248 3.9e-18 95.9 111 50.5
Phvul.010G094600 Phaseolus vulgaris HOM05D000032 ORTHO05D008248 5.1e-18 95.5 83 63.9
SGA_v2.0_scaffold86G26859 Striga asiatica HOM05D000032 ORTHO05D008248 2.5e-17 93.2 141 40.4
Cfa014812 Carpinus fangiana HOM05D000032 ORTHO05D008248 7.4e-17 91.7 113 48.7
Medtr7g057250 Medicago truncatula HOM05D000032 ORTHO05D008248 9.7e-17 91.3 113 50.4
Psat3g146960 Pisum sativum HOM05D000032 ORTHO05D008248 9.7e-17 91.3 119 46.2
CiPaw.01G175600 Carya illinoinensis HOM05D000032 ORTHO05D008248 1.3e-16 90.9 80 55.0
GSVIVG01027957001 Vitis vinifera HOM05D000032 ORTHO05D008248 3.7e-16 89.4 81 56.8
Hma1.2p1_0112F.1_g054935 Hydrangea macrophylla HOM05D000032 ORTHO05D008248 8.2e-16 88.2 111 48.6
vmacro00534 Vaccinium macrocarpon HOM05D000032 ORTHO05D008248 2.4e-15 86.7 90 54.4
Sabra10G0043300 Salix brachista HOM05D000032 ORTHO05D008248 4.1e-15 85.9 72 61.1
CANSAT78G0248 Cannabis sativa HOM05D000032 ORTHO05D008248 6.9e-15 85.1 119 46.2
SalBow2G1692 Salvia bowleyana HOM05D000032 ORTHO05D008248 6.9e-15 85.1 112 47.3
Duzib151G1189 Durio zibethinus HOM05D000032 ORTHO05D008248 9.1e-15 84.7 101 50.5
TPR.G9295 Trifolium pratense HOM05D000032 ORTHO05D008248 9.1e-15 84.7 112 44.6
Haze_11492 Corylus avellana HOM05D000032 ORTHO05D008248 1.2e-14 84.3 118 44.1
Gorai.006G254000 Gossypium raimondii HOM05D000032 ORTHO05D008248 1.5e-14 84.0 95 50.5
Oeu023144.1 Olea europaea HOM05D000032 ORTHO05D008248 2.0e-14 83.6 111 46.8
Rhsim09G0043500 Rhododendron simsii HOM05D000032 ORTHO05D008248 2.6e-14 83.2 94 51.1
Dinv29787 Davidia involucrata HOM05D000032 ORTHO05D008248 3.4e-14 82.8 88 54.5
Migut.G00589 Erythranthe guttata HOM05D000032 ORTHO05D008248 3.4e-14 82.8 118 45.8
MD12G1094500 Malus domestica HOM05D000032 ORTHO05D008248 3.4e-14 82.8 75 57.3
PGR142G3130 Punica granatum HOM05D000032 ORTHO05D008248 3.4e-14 82.8 83 54.2
Cc03_g06800 Coffea canephora HOM05D000032 ORTHO05D008248 4.5e-14 82.4 111 43.2
Gohir.D09G231300 Gossypium hirsutum HOM05D000032 ORTHO05D008248 5.9e-14 82.0 95 49.5
Manes.15G047300 Manihot esculenta HOM05D000032 ORTHO05D008248 7.7e-14 81.6 116 45.7
TAR365G0107 Trochodendron aralioides HOM05D000032 ORTHO05D008248 7.7e-14 81.6 73 49.3
Eucgr.H02888 Eucalyptus grandis HOM05D000032 ORTHO05D008248 1.3e-13 80.9 116 44.8
Gohir.A09G230200 Gossypium hirsutum HOM05D000032 ORTHO05D008248 1.3e-13 80.9 96 49.0
Thecc.04G268600 Theobroma cacao HOM05D000032 ORTHO05D008248 1.3e-13 80.9 97 51.5
CSS0035942 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D008248 1.7e-13 80.5 95 47.4
Lj3g0023133 Lotus japonicus HOM05D000032 ORTHO05D008248 1.7e-13 80.5 121 44.6
MD14G1084300 Malus domestica HOM05D000032 ORTHO05D008248 2.2e-13 80.1 104 46.2
Cpa.g.sc59.33 Carica papaya HOM05D000032 ORTHO05D024695 3.8e-13 79.3 94 48.9
EL10Ac3g06715 Beta vulgaris HOM05D000032 ORTHO05D008248 5.0e-13 79.0 77 55.8
Prupe.5G037600 Prunus persica HOM05D000032 ORTHO05D008248 5.0e-13 79.0 75 56.0
CSS0044228 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D024695 1.1e-12 77.8 76 55.3
Lalb_Chr10g0097291 Lupinus albus HOM05D000032 ORTHO05D008248 4.2e-12 75.9 122 43.4
Lj3C638G9 Lonicera japonica HOM05D000032 ORTHO05D008248 7.2e-12 75.1 87 48.3
Ah.04g153530 Amaranthus hybridus HOM05D000032 ORTHO05D008248 9.4e-12 74.7 66 56.1
TWI73G0114 Tripterygium wilfordii HOM05D000032 ORTHO05D008248 9.4e-12 74.7 98 45.9
Atru.chr4.1879 Acer truncatum HOM05D000032 ORTHO05D008248 1.2e-11 74.3 107 44.9
Lsat_1_v5_gn_2_42041 Lactuca sativa HOM05D000032 ORTHO05D008248 1.6e-11 73.9 104 45.2
ECA232G1204 Erigeron canadensis HOM05D000032 ORTHO05D008248 2.1e-11 73.6 109 43.1
arahy.Tifrunner.gnm1.ann1.15AJKM Arachis hypogaea HOM05D000032 ORTHO05D008248 2.7e-11 73.2 70 55.7
CSS0031692 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D024695 2.7e-11 73.2 77 54.5
arahy.Tifrunner.gnm1.ann1.W310LH Arachis hypogaea HOM05D000032 ORTHO05D008248 3.6e-11 72.8 70 54.3
CSS0020734 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D024695 3.6e-11 72.8 76 52.6
COL.COLO4_15998 Corchorus olitorius HOM05D000032 ORTHO05D008248 3.6e-11 72.8 87 47.1
Ciclev10004340m.g Citrus clementina HOM05D000032 ORTHO05D008248 4.7e-11 72.4 86 48.8
ECA232G3455 Erigeron canadensis HOM05D000032 ORTHO05D008248 4.7e-11 72.4 68 57.4
BcaB04g20873 Brassica carinata HOM05D000032 ORTHO05D008248 7.9e-11 71.6 125 41.6
Nitab4.5_0002937g0050 Nicotiana tabacum HOM05D000032 ORTHO05D008248 7.9e-11 71.6 110 45.5
THA.LOC104802593 Tarenaya hassleriana HOM05D000032 ORTHO05D008248 7.9e-11 71.6 63 57.1
Actinidia32966 Actinidia chinensis HOM05D000032 ORTHO05D008248 1.0e-10 71.2 48 70.8
Carub.0003s1655 Capsella rubella HOM05D000032 ORTHO05D008248 1.0e-10 71.2 111 42.3
AL3G29800 Arabidopsis lyrata HOM05D000032 ORTHO05D008248 2.3e-10 70.1 79 50.6
FAN28G1398 Fragaria x ananassa HOM05D000032 ORTHO05D008248 3.9e-10 69.3 104 45.2
FAN23G0160 Fragaria x ananassa HOM05D000032 ORTHO05D008248 6.7e-10 68.6 104 44.2
FAN19G1189 Fragaria x ananassa HOM05D000032 ORTHO05D008248 8.8e-10 68.2 103 43.7
Nitab4.5_0003474g0040 Nicotiana tabacum HOM05D000032 ORTHO05D008248 1.1e-09 67.8 109 45.0
Sp3g15080 Schrenkiella parvula HOM05D000032 ORTHO05D008248 1.1e-09 67.8 125 38.4
RcHm_v2.0_Chr3g0492441 Rosa chinensis HOM05D000032 ORTHO05D008248 1.5e-09 67.4 74 54.1
AT3G16840 Arabidopsis thaliana HOM05D000032 ORTHO05D008248 2.6e-09 66.6 86 45.3
CARHR092100 Cardamine hirsuta HOM05D000032 ORTHO05D008248 2.6e-09 66.6 109 40.4
unitig_899.g14854 Utricularia gibba HOM05D000032 ORTHO05D008248 3.3e-09 66.2 113 42.5
PSO339G1682 Papaver somniferum HOM05D000032 ORTHO05D008248 5.7e-09 65.5 96 42.7
Hund20473 Selenicereus undatus HOM05D000032 ORTHO05D008248 5.7e-09 65.5 106 43.4
DCAR_024298 Daucus carota HOM05D000032 ORTHO05D008248 7.4e-09 65.1 124 40.3
Sopen09g033680 Solanum pennellii HOM05D000032 ORTHO05D008248 7.4e-09 65.1 103 41.7
MBI10_g26047_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D008248 9.7e-09 64.7 63 50.8
Peaxi162Scf00125g01324 Petunia axillaris HOM05D000032 ORTHO05D008248 9.7e-09 64.7 109 39.4
CARHR247950 Cardamine hirsuta HOM05D000032 ORTHO05D008248 1.7e-08 63.9 81 44.4
CAN.G812.30 Capsicum annuum HOM05D000032 ORTHO05D008248 2.2e-08 63.5 102 44.1
PSO063G0133 Papaver somniferum HOM05D000032 ORTHO05D008248 2.2e-08 63.5 95 41.1
Solyc09g090740.4 Solanum lycopersicum HOM05D000032 ORTHO05D008248 2.8e-08 63.2 111 39.6
BcaC09g48642 Brassica carinata HOM05D000032 ORTHO05D008248 4.8e-08 62.4 101 42.6
BolC1t04705H Brassica oleracea HOM05D000032 ORTHO05D008248 4.8e-08 62.4 101 42.6
Sc13g0003050 Simmondsia chinensis HOM05D000032 ORTHO05D008248 8.2e-08 61.6 60 51.7
PGSC0003DMG400001506 Solanum tuberosum HOM05D000032 ORTHO05D008248 1.1e-07 61.2 87 43.7
A01p37420 Brassica napus HOM05D000032 ORTHO05D008248 1.8e-07 60.5 101 41.6
BraA01t03799Z Brassica rapa HOM05D000032 ORTHO05D008248 1.8e-07 60.5 101 41.6
HanXRQChr14g0434201 Helianthus annuus HOM05D000032 ORTHO05D008248 2.4e-07 60.1 112 37.5
C01p47350 Brassica napus HOM05D000032 ORTHO05D008248 3.1e-07 59.7 101 42.6
Psat3g117880 Pisum sativum HOM05D000032 ORTHO05D008248 7.0e-07 58.5 77 45.5
Thhalv10020025m.g Eutrema salsugineum HOM05D000032 ORTHO05D008248 2.0e-06 57.0 109 35.8
ATR1096G059 Amborella trichopoda HOM05D000032 ORTHO05D008248 3.5e-06 56.2 60 43.3


User provided reference genes

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