Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 1.4e-209 732.6 363 100.0
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 7.6e-203 710.3 355 98.9
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 1.9e-198 695.7 355 96.3
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 3.6e-184 648.3 355 91.5
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 9.1e-164 580.5 362 82.0
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 9.1e-164 580.5 354 81.9
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 2.0e-163 579.3 360 81.4
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 7.7e-163 577.4 366 80.3
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 5.0e-162 574.7 359 81.1
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 5.0e-162 574.7 361 79.5
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 4.2e-161 571.6 359 81.6
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 7.2e-161 570.9 360 79.7
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 3.6e-160 568.5 358 80.4
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 1.0e-159 567.0 354 79.9
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 2.3e-159 565.8 353 81.6
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 4.4e-158 561.6 357 79.0
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 1.7e-157 559.7 360 80.8
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 2.2e-157 559.3 361 79.2
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 3.7e-157 558.5 359 79.1
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 4.8e-157 558.1 360 80.6
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 8.2e-157 557.4 360 80.6
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 8.2e-157 557.4 355 78.6
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 8.2e-157 557.4 366 78.7
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 2.4e-156 555.8 362 77.3
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 4.1e-156 555.1 359 79.1
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 9.1e-156 553.9 360 80.3
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 1.2e-155 553.5 360 80.0
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 1.2e-155 553.5 354 79.1
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 1.6e-155 553.1 360 78.3
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.5e-155 552.0 360 79.7
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 1.3e-154 550.1 354 79.7
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 1.3e-154 550.1 365 77.8
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 1.3e-154 550.1 354 79.9
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 2.2e-154 549.3 354 79.1
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 2.9e-154 548.9 367 77.7
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 1.5e-153 546.6 354 78.5
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 1.9e-153 546.2 370 77.3
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.5e-153 545.8 360 79.2
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 2.5e-153 545.8 354 78.8
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 3.2e-153 545.4 362 77.1
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 7.2e-153 544.3 363 77.7
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 8.0e-152 540.8 365 75.3
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 1.0e-151 540.4 353 78.5
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 1.4e-151 540.0 353 76.8
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 8.8e-151 537.3 355 75.2
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 8.8e-151 537.3 361 74.8
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 1.2e-150 537.0 362 77.3
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 1.5e-150 536.6 359 76.0
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 2.0e-150 536.2 362 75.4
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 7.5e-150 534.3 354 76.6
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 7.5e-150 534.3 352 77.0
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 1.3e-149 533.5 364 75.0
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 1.7e-149 533.1 369 75.3
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 2.2e-149 532.7 362 75.1
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 8.3e-149 530.8 373 74.8
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.8e-148 529.6 355 75.2
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 4.1e-148 528.5 353 77.3
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 7.0e-148 527.7 354 75.1
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 9.1e-148 527.3 362 75.1
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 1.2e-147 526.9 362 75.1
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 1.6e-147 526.6 362 75.1
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 2.0e-147 526.2 352 74.7
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 2.7e-147 525.8 357 75.4
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 5.9e-147 524.6 360 74.2
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 5.9e-147 524.6 362 75.1
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 2.9e-146 522.3 362 75.1
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 2.9e-146 522.3 362 73.5
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 4.0e-143 511.9 368 71.2
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 2.0e-142 509.6 365 72.1
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 2.6e-142 509.2 311 83.0
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 2.2e-141 506.1 362 72.9
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 2.2e-141 506.1 433 65.1
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 1.1e-140 503.8 360 75.0
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 1.4e-140 503.4 313 81.5
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 1.8e-140 503.1 352 72.2
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 4.5e-139 498.4 361 70.9
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 7.8e-139 497.7 352 71.6
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.3e-138 496.9 366 71.0
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.3e-138 496.9 360 73.9
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 2.3e-138 496.1 352 71.9
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 2.9e-138 495.7 350 72.0
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 2.9e-138 495.7 354 71.2
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 3.8e-138 495.4 366 70.5
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 1.1e-137 493.8 352 71.9
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 6.1e-136 488.0 354 71.8
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 1.0e-135 487.3 366 71.0
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 4.0e-135 485.3 338 74.6
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 2.0e-134 483.0 366 67.8
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 1.3e-133 480.3 361 68.7
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 1.7e-133 479.9 347 71.5
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.4e-132 476.9 394 65.2
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 7.8e-131 471.1 358 72.1
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.7e-130 469.9 353 67.4
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 1.1e-129 467.2 352 69.3
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 1.1e-129 467.2 352 69.3
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 8.9e-127 457.6 373 65.4
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 9.8e-126 454.1 363 68.6
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 4.1e-124 448.7 361 66.2
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 3.5e-123 445.7 319 73.0
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 5.0e-122 441.8 352 66.8
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 3.1e-119 432.6 317 70.7
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 5.2e-119 431.8 317 70.7
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 3.7e-117 425.6 363 62.8
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 6.4e-117 424.9 318 70.8
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 6.4e-117 424.9 325 69.5
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 3.6e-112 409.1 368 59.0
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 1.5e-110 403.7 294 72.4
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 2.2e-109 399.8 367 59.4
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 3.8e-109 399.1 398 54.3
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 6.4e-109 398.3 356 59.8
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 2.1e-107 393.3 374 58.3
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 3.5e-107 392.5 302 69.2
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 3.5e-107 392.5 354 59.0
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 3.5e-107 392.5 326 65.3
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 5.1e-106 388.7 355 58.6
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 2.2e-101 373.2 372 55.1
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 1.3e-98 364.0 356 54.2
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 1.1e-97 360.9 384 51.8
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 2.4e-95 353.2 329 62.0
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 5.3e-95 352.1 284 67.3
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.1e-89 334.3 313 60.7
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 1.5e-89 334.0 389 47.8
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 7.4e-89 331.6 287 63.1
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 9.0e-87 324.7 189 86.2
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.7e-85 320.5 325 56.6
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 5.5e-84 315.5 365 47.9
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 7.1e-84 315.1 381 45.1
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 8.8e-66 255.0 141 87.9
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 2.8e-64 250.0 406 38.9
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 6.7e-58 228.8 213 59.6
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 2.4e-47 193.7 102 88.2
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 2.0e-41 174.1 280 36.1
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 1.3e-32 144.8 195 41.5
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 3.7e-32 143.3 197 46.7
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 1.8e-31 141.0 203 40.9
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.2e-30 138.3 138 60.1
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 6.8e-18 95.9 61 78.7
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 1.9e-15 87.8 96 49.0
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 5.4e-15 86.3 243 27.6
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 3.5e-14 83.6 60 68.3
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.5e-12 78.2 87 50.6
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 2.3e-10 70.9 207 30.4
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 2.1e-06 57.8 37 62.2


User provided reference genes

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