Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 0.0e+00 1156.4 570 100.0
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 5.4e-280 967.2 544 89.3
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 1.9e-224 782.7 549 69.9
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 6.1e-223 777.7 546 69.8
MELO3C012474.2 Cucumis melo HOM05D006097 ORTHO05D008538 1.5e-221 773.1 512 78.9
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 9.7e-221 770.4 550 68.2
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 2.4e-219 765.8 547 69.8
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 1.5e-216 756.5 580 66.0
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 5.5e-216 754.6 563 65.9
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 2.3e-214 749.2 572 68.2
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 1.5e-213 746.5 546 67.6
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 8.3e-212 740.7 546 67.0
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 1.4e-211 740.0 546 66.7
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 4.5e-210 734.9 551 65.5
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 5.9e-210 734.6 546 66.3
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 2.2e-209 732.6 543 67.8
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 6.5e-209 731.1 564 63.7
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 9.4e-208 727.2 544 66.4
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 1.2e-207 726.9 565 63.7
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 2.1e-207 726.1 547 64.4
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 4.7e-207 724.9 543 66.5
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 4.4e-205 718.4 544 64.9
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 4.4e-205 718.4 544 64.9
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 1.1e-203 713.8 544 64.3
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 5.4e-203 711.4 544 64.5
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 2.0e-202 709.5 542 64.4
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 2.9e-201 705.7 546 63.6
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 6.6e-201 704.5 543 63.9
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 8.6e-201 704.1 543 65.6
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 1.5e-200 703.4 564 62.8
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 4.3e-200 701.8 565 62.1
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 4.3e-200 701.8 545 64.0
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 1.2e-199 700.3 544 62.3
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 4.7e-199 698.4 546 61.7
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 1.4e-198 696.8 546 62.6
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 3.0e-198 695.7 566 62.5
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 1.5e-197 693.3 543 62.8
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 4.4e-197 691.8 544 62.5
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 2.9e-196 689.1 547 61.6
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 3.7e-196 688.7 544 61.9
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 1.1e-195 687.2 544 61.2
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 1.4e-195 686.8 543 60.6
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 1.8e-195 686.4 549 61.7
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 1.8e-195 686.4 544 62.1
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 1.8e-195 686.4 585 60.2
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 2.4e-195 686.0 564 60.1
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 2.4e-195 686.0 544 61.2
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 5.4e-195 684.9 544 61.6
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 7.0e-195 684.5 551 61.3
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 9.2e-195 684.1 544 62.7
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 7.8e-194 681.0 544 61.2
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 7.8e-194 681.0 550 61.1
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 1.3e-193 680.2 547 61.2
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 2.3e-193 679.5 544 59.7
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 8.6e-193 677.6 562 60.0
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 2.5e-192 676.0 547 61.1
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 9.5e-192 674.1 543 59.5
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 9.5e-192 674.1 573 59.3
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 1.2e-191 673.7 602 57.8
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 2.8e-191 672.5 544 59.7
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 4.7e-191 671.8 544 60.5
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 1.2e-189 667.2 521 63.7
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 2.0e-189 666.4 544 60.1
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 1.6e-186 656.8 546 59.5
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 1.6e-186 656.8 545 59.1
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 2.3e-185 652.9 587 56.0
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 6.6e-185 651.4 544 58.5
Eucgr.G03235 Eucalyptus grandis HOM05D006097 ORTHO05D008538 1.2e-183 647.1 550 60.4
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 6.2e-183 644.8 544 57.7
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 2.6e-181 639.4 564 58.3
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 4.9e-180 635.2 493 62.5
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 1.3e-177 627.1 625 52.3
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 1.9e-176 623.2 576 56.4
Hma1.2p1_1627F.1_g294440 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 3.6e-175 619.0 471 64.1
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 2.2e-172 609.8 545 55.4
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 2.7e-170 602.8 544 54.2
PGSC0003DMG400025223 Solanum tuberosum HOM05D006097 ORTHO05D008538 6.2e-167 591.7 469 61.0
Sc07g0002170 Simmondsia chinensis HOM05D006097 ORTHO05D008538 1.2e-165 587.4 470 60.4
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 2.0e-165 586.6 543 53.2
Solyc08g014470.4 Solanum lycopersicum HOM05D006097 ORTHO05D008538 2.9e-164 582.8 469 60.3
DCAR_031244 Daucus carota HOM05D006097 ORTHO05D008538 8.1e-159 564.7 476 58.8
Hma1.2p1_1627F.1_g294450 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 2.2e-156 556.6 457 60.8
QL04p017846 Quercus lobata HOM05D006097 ORTHO05D008538 8.4e-156 554.7 413 65.6
AT3G55850 Arabidopsis thaliana HOM05D006097 ORTHO05D008538 8.7e-153 544.7 471 57.7
MBI19_g07612_MAGBIO Magnolia biondii HOM05D006097 ORTHO05D008538 4.3e-152 542.3 527 53.3
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 2.6e-149 533.1 548 53.5
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 1.4e-139 500.7 546 46.9
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 2.1e-138 496.9 513 52.0
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 1.1e-136 491.1 546 46.9
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 5.3e-134 482.3 479 52.6
TAR623G0406 Trochodendron aralioides HOM05D006097 ORTHO05D008538 1.3e-132 477.6 357 66.1
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 1.0e-129 468.0 543 45.9
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 2.3e-129 466.8 549 45.7
AUR62037188 Chenopodium quinoa HOM05D006097 ORTHO05D008538 5.1e-121 439.1 404 54.0
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 1.8e-118 430.6 532 45.9
Oeu048573.1 Olea europaea HOM05D006097 ORTHO05D008538 2.2e-111 407.1 334 59.9
vmacro12697 Vaccinium macrocarpon HOM05D006097 ORTHO05D008538 9.7e-104 381.7 262 66.4
VMungo1127G1698 Vigna mungo HOM05D006097 ORTHO05D008538 4.1e-102 376.3 263 68.1
Ca_26912_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 1.6e-101 374.4 309 57.3
FAN10G0529 Fragaria x ananassa HOM05D006097 ORTHO05D008538 2.9e-100 370.2 691 35.9
CDE06G1230 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 1.6e-93 347.8 368 48.9
Thhalv10010899m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 1.6e-90 337.8 269 60.6
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 4.0e-89 333.2 511 40.7
Lj9A654G51 Lonicera japonica HOM05D006097 ORTHO05D008538 2.3e-81 307.4 254 59.1
Zm00001eb140700 Zea mays HOM05D006097 ORTHO05D008538 6.8e-81 305.8 244 59.8
MCO06G284 Micromonas commoda HOM05D006097 ORTHO05D008538 2.7e-77 293.9 575 35.0
VMungo1127G1548 Vigna mungo HOM05D006097 ORTHO05D008538 1.8e-65 254.6 176 67.6
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 1.0e-60 238.8 500 32.6
Cre06.g279350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 1.5e-59 235.0 478 32.6
TAR623G0702 Trochodendron aralioides HOM05D006097 ORTHO05D008538 1.5e-59 235.0 164 66.5
Lj9A654T55 Lonicera japonica HOM05D006097 ORTHO05D008538 4.1e-54 216.9 140 71.4
Pp3s32_630 Physcomitrium patens HOM05D006097 ORTHO05D008538 1.7e-52 211.5 524 30.5
QL04p017840 Quercus lobata HOM05D006097 ORTHO05D008538 6.4e-47 193.0 117 80.3
Cre07.g313350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 1.6e-42 178.3 550 27.8
PRCOL_00006109 Prasinoderma coloniale HOM05D006097 ORTHO05D008538 2.9e-39 167.5 401 31.9
Ca_03883_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 2.7e-29 134.4 91 70.3
CDE06G0927 Ceratophyllum demersum HOM05D006097 ORTHO05D020391 2.8e-26 124.4 101 60.4
Nn2g16009 Nelumbo nucifera HOM05D006097 ORTHO05D008538 3.8e-23 114.0 91 57.1
Medtr1224s0010 Medicago truncatula HOM05D006097 ORTHO05D008538 6.7e-20 103.2 577 23.9
CDE06G2151 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 5.7e-19 100.1 84 56.0
SMO197G0087 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 1.3e-18 99.0 118 44.1
DCAR_031243 Daucus carota HOM05D006097 ORTHO05D020391 1.6e-18 98.6 76 63.2
SMO005G0015 Selaginella moellendorffii HOM05D006097 ORTHO05D011308 2.2e-18 98.2 105 49.5
SMO125G0001 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 2.8e-18 97.8 182 35.2
SMO009G0029 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 4.1e-17 94.0 113 45.1
SMO212G0005 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 6.9e-17 93.2 114 43.9
SMO274G0019 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 1.7e-15 88.6 112 42.0
SEGI_33421 Sequoiadendron giganteum HOM05D006097 ORTHO05D020391 3.2e-14 84.3 74 56.8
RcHm_v2.0_Chr6g0254811 Rosa chinensis HOM05D006097 ORTHO05D020391 7.2e-14 83.2 57 64.9
Carub.0002s2671 Capsella rubella HOM05D006097 ORTHO05D008538 1.6e-13 82.0 58 55.2
CDE06G1678 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 3.8e-07 60.8 48 58.3
Nn313s46297 Nelumbo nucifera HOM05D006097 ORTHO05D008538 3.2e-06 57.8 46 63.0
Hma1.2p1_0269F.1_g107740 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 4.2e-06 57.4 38 68.4
Hma1.2p1_3244F.1_g334325 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 4.2e-06 57.4 38 68.4
BolC8t50740H Brassica oleracea HOM05D035890 ORTHO05D033370 5.5e-06 57.0 42 59.5


User provided reference genes

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