Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G025500 Citrullus lanatus HOM05D004907 ORTHO05D005707 1.3e-224 782.7 381 100.0
CsaV3_5G031400 Cucumis sativus L. HOM05D004907 ORTHO05D005707 6.2e-171 604.4 367 79.6
MELO3C011980.2 Cucumis melo HOM05D004907 ORTHO05D005707 8.9e-170 600.5 372 78.8
Cfa009181 Carpinus fangiana HOM05D004907 ORTHO05D005707 6.7e-109 398.3 370 53.2
Haze_12215 Corylus avellana HOM05D004907 ORTHO05D005707 1.5e-108 397.1 366 52.7
QL03p059196 Quercus lobata HOM05D004907 ORTHO05D005707 1.5e-108 397.1 378 52.6
Prupe.1G249900 Prunus persica HOM05D004907 ORTHO05D005707 3.1e-106 389.4 366 52.2
CiPaw.06G069900 Carya illinoinensis HOM05D004907 ORTHO05D005707 1.0e-104 384.4 363 52.9
Cfa009182 Carpinus fangiana HOM05D004907 ORTHO05D005707 1.3e-104 384.0 366 51.6
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 1.7e-104 383.6 368 50.5
CiPaw.05G186900 Carya illinoinensis HOM05D004907 ORTHO05D005707 8.2e-99 364.8 365 49.6
MD13G1095300 Malus domestica HOM05D004907 ORTHO05D005707 1.4e-98 364.0 359 48.7
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 7.0e-98 361.7 367 46.9
Duzib268G1138 Durio zibethinus HOM05D004907 ORTHO05D005707 1.2e-97 360.9 368 47.8
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 1.6e-97 360.5 366 47.3
Lj6P808T27 Lonicera japonica HOM05D004907 ORTHO05D005707 2.0e-97 360.1 370 47.0
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 3.5e-97 359.4 365 46.6
MD16G1096400 Malus domestica HOM05D004907 ORTHO05D005707 7.7e-97 358.2 359 49.3
RcHm_v2.0_Chr4g0441991 Rosa chinensis HOM05D004907 ORTHO05D005707 1.0e-96 357.8 363 47.4
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 2.2e-96 356.7 368 48.4
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 2.9e-96 356.3 366 45.6
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 2.9e-96 356.3 365 46.8
FAN12G3344 Fragaria x ananassa HOM05D004907 ORTHO05D005707 3.8e-96 355.9 371 47.7
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 6.5e-96 355.1 366 46.4
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 8.5e-96 354.8 366 46.7
FvH4_4g32970 Fragaria vesca HOM05D004907 ORTHO05D005707 1.1e-95 354.4 371 47.4
FAN22G1867 Fragaria x ananassa HOM05D004907 ORTHO05D005707 2.5e-95 353.2 365 48.2
MD16G1096500 Malus domestica HOM05D004907 ORTHO05D005707 2.5e-95 353.2 351 50.4
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 9.4e-95 351.3 371 47.4
CANSAT01G1025 Cannabis sativa HOM05D004907 ORTHO05D005707 1.6e-94 350.5 360 48.1
FAN17G0584 Fragaria x ananassa HOM05D004907 ORTHO05D005707 2.3e-93 346.7 364 47.8
Thecc.02G254700 Theobroma cacao HOM05D004907 ORTHO05D005707 2.3e-93 346.7 366 46.2
Hma1.2p1_0223F.1_g094330 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 4.0e-93 345.9 375 48.8
FAN07G1203 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.2e-92 344.4 360 47.2
DCAR_007072 Daucus carota HOM05D004907 ORTHO05D005707 2.0e-92 343.6 363 45.5
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 5.7e-92 342.0 362 46.1
Ciclev10031561m.g Citrus clementina HOM05D004907 ORTHO05D005707 2.2e-91 340.1 375 47.5
Gohir.A05G313700 Gossypium hirsutum HOM05D004907 ORTHO05D005707 3.7e-91 339.3 370 44.9
Gohir.D01G149900 Gossypium hirsutum HOM05D004907 ORTHO05D005707 8.3e-91 338.2 367 45.0
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.8e-90 337.0 368 46.2
Gorai.002G186000 Gossypium raimondii HOM05D004907 ORTHO05D005707 4.1e-90 335.9 367 44.7
PGR119G0630 Punica granatum HOM05D004907 ORTHO05D005707 9.1e-90 334.7 368 42.9
TAR374G1110 Trochodendron aralioides HOM05D004907 ORTHO05D005707 1.2e-89 334.3 368 42.7
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 1.6e-89 334.0 339 48.1
Lj4g0000696 Lotus japonicus HOM05D004907 ORTHO05D005707 1.6e-89 334.0 375 44.8
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 2.0e-89 333.6 368 45.1
Lsat_1_v5_gn_3_28580 Lactuca sativa HOM05D004907 ORTHO05D005707 1.1e-87 327.8 364 45.6
Gorai.009G337200 Gossypium raimondii HOM05D004907 ORTHO05D005707 3.2e-87 326.2 369 44.4
Rhsim12G0113900 Rhododendron simsii HOM05D004907 ORTHO05D005707 3.2e-87 326.2 374 45.5
Haze_12216 Corylus avellana HOM05D004907 ORTHO05D005707 9.4e-87 324.7 367 46.3
Rhsim12G0042700 Rhododendron simsii HOM05D004907 ORTHO05D005707 1.2e-86 324.3 374 45.5
Eucgr.H02548 Eucalyptus grandis HOM05D004907 ORTHO05D005707 2.1e-86 323.6 374 43.6
Eucgr.H02549 Eucalyptus grandis HOM05D004907 ORTHO05D005707 2.1e-86 323.6 373 43.7
Sc04g0009300 Simmondsia chinensis HOM05D004907 ORTHO05D005707 4.7e-86 322.4 372 42.2
PGR102G3060 Punica granatum HOM05D004907 ORTHO05D005707 5.2e-85 318.9 380 43.4
Actinidia27794 Actinidia chinensis HOM05D004907 ORTHO05D005707 7.5e-84 315.1 362 45.3
Psat5g210760 Pisum sativum HOM05D004907 ORTHO05D005707 9.8e-84 314.7 355 45.4
VMungo1215G1811 Vigna mungo HOM05D004907 ORTHO05D005707 1.7e-83 313.9 371 43.9
Lalb_Chr05g0216711 Lupinus albus HOM05D004907 ORTHO05D005707 2.2e-83 313.5 354 43.5
Ca_03137_v3 Cicer arietinum L. HOM05D004907 ORTHO05D005707 3.7e-83 312.8 370 43.2
Glyma.08G284600 Glycine max HOM05D004907 ORTHO05D005707 6.3e-83 312.0 368 44.0
TPR.G24774 Trifolium pratense HOM05D004907 ORTHO05D005707 1.8e-82 310.5 372 43.3
Cc11_g15390 Coffea canephora HOM05D004907 ORTHO05D005707 2.4e-82 310.1 380 42.9
Nn4g22709 Nelumbo nucifera HOM05D004907 ORTHO05D005707 2.4e-82 310.1 372 43.5
Glyma.01G028800 Glycine max HOM05D004907 ORTHO05D005707 5.4e-82 308.9 368 42.9
PSO063G4965 Papaver somniferum HOM05D004907 ORTHO05D005707 1.2e-81 307.8 375 40.3
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 1.6e-81 307.4 367 45.2
Glyma.18G141000 Glycine max HOM05D004907 ORTHO05D005707 2.0e-81 307.0 370 43.5
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 2.0e-81 307.0 360 43.3
PSO782G1891 Papaver somniferum HOM05D004907 ORTHO05D005707 3.5e-81 306.2 380 41.1
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 4.5e-81 305.8 365 42.2
Oeu001729.1 Olea europaea HOM05D004907 ORTHO05D005707 7.7e-81 305.1 365 41.9
Potri.010G042900 Populus trichocarpa HOM05D004907 ORTHO05D005707 2.3e-80 303.5 409 44.5
Migut.L01466 Erythranthe guttata HOM05D004907 ORTHO05D005707 2.9e-80 303.1 368 44.6
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 3.8e-80 302.8 368 40.2
Gohir.A01G160100 Gossypium hirsutum HOM05D004907 ORTHO05D005707 3.8e-80 302.8 303 46.2
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 1.5e-79 300.8 362 40.3
Medtr8g069800 Medicago truncatula HOM05D004907 ORTHO05D005707 9.5e-79 298.1 356 43.3
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 1.2e-78 297.7 369 43.6
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 2.1e-78 297.0 366 41.0
GSVIVG01013786001 Vitis vinifera HOM05D004907 ORTHO05D005707 6.1e-78 295.4 264 49.6
Medtr5g043750 Medicago truncatula HOM05D004907 ORTHO05D005707 1.0e-77 294.7 371 42.0
Sabra10G0024600 Salix brachista HOM05D004907 ORTHO05D005707 2.3e-77 293.5 390 44.4
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 5.2e-77 292.4 362 40.3
PSO170G6868 Papaver somniferum HOM05D004907 ORTHO05D005707 6.8e-77 292.0 373 39.7
PSO441G0001 Papaver somniferum HOM05D004907 ORTHO05D005707 6.8e-77 292.0 373 39.7
Psat2g106360 Pisum sativum HOM05D004907 ORTHO05D005707 6.8e-77 292.0 368 42.7
Phvul.003G062300 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 1.2e-76 291.2 360 41.9
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 2.8e-75 286.6 371 42.3
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 3.7e-75 286.2 366 42.9
Dinv15270 Davidia involucrata HOM05D004907 ORTHO05D005707 6.3e-75 285.4 257 51.8
PSO144G0054 Papaver somniferum HOM05D004907 ORTHO05D005707 2.4e-74 283.5 392 38.5
Medtr5g033880 Medicago truncatula HOM05D004907 ORTHO05D005707 2.0e-73 280.4 378 39.9
PSO170G1656 Papaver somniferum HOM05D004907 ORTHO05D005707 2.7e-73 280.0 375 38.4
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 5.6e-71 272.3 366 42.1
Hund25371 Selenicereus undatus HOM05D004907 ORTHO05D005707 4.7e-70 269.2 365 38.9
THA.LOC104822976 Tarenaya hassleriana HOM05D004907 ORTHO05D005707 1.0e-69 268.1 369 39.8
Oeu056415.1 Olea europaea HOM05D004907 ORTHO05D005707 2.3e-69 266.9 371 36.9
Thecc.02G254800 Theobroma cacao HOM05D004907 ORTHO05D005707 1.2e-68 264.6 371 39.1
Peaxi162Scf00158g00003 Petunia axillaris HOM05D004907 ORTHO05D005707 2.0e-68 263.8 266 44.4
Ah.03g132850 Amaranthus hybridus HOM05D000168 ORTHO05D000811 5.8e-68 262.3 284 44.0
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 5.8e-68 262.3 401 40.9
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 5.8e-68 262.3 365 38.9
Oeu056417.1 Olea europaea HOM05D004907 ORTHO05D005707 1.3e-67 261.2 375 37.1
AT1G23390 Arabidopsis thaliana HOM05D004907 ORTHO05D005707 1.1e-66 258.1 371 37.5
Sed0027759 Sechium edule HOM05D004907 ORTHO05D005707 3.2e-66 256.5 366 38.5
BcaB07g32334 Brassica carinata HOM05D004907 ORTHO05D005707 5.4e-66 255.8 369 37.4
C05p22690 Brassica napus HOM05D004907 ORTHO05D005707 9.2e-66 255.0 393 35.9
BolC5t30967H Brassica oleracea HOM05D004907 ORTHO05D005707 1.2e-65 254.6 393 35.9
Sp1g20830 Schrenkiella parvula HOM05D004907 ORTHO05D005707 1.6e-65 254.2 371 38.0
BraA09t39619Z Brassica rapa HOM05D004907 ORTHO05D005707 3.5e-65 253.1 379 37.5
A09p41240 Brassica napus HOM05D004907 ORTHO05D005707 6.0e-65 252.3 378 37.6
Aa31LG7G7420 Aethionema arabicum HOM05D004907 ORTHO05D005707 1.0e-64 251.5 366 38.3
Thhalv10007835m.g Eutrema salsugineum HOM05D004907 ORTHO05D005707 1.0e-64 251.5 376 34.6
Phvul.002G064500 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 1.7e-64 250.8 242 47.5
BcaC05g26256 Brassica carinata HOM05D004907 ORTHO05D005707 3.0e-64 250.0 368 37.8
COL.COLO4_24215 Corchorus olitorius HOM05D004907 ORTHO05D005707 3.0e-64 250.0 265 44.5
AL1G37180 Arabidopsis lyrata HOM05D004907 ORTHO05D005707 1.5e-63 247.7 368 37.0
Oeu055460.1 Olea europaea HOM05D004907 ORTHO05D005707 3.3e-63 246.5 367 37.6
SalBow3G2985 Salvia bowleyana HOM05D004907 ORTHO05D005707 3.3e-63 246.5 368 38.9
Gohir.D05G315200 Gossypium hirsutum HOM05D004907 ORTHO05D005707 5.6e-63 245.7 227 50.2
CARHR023830 Cardamine hirsuta HOM05D004907 ORTHO05D005707 1.1e-61 241.5 377 36.6
SGA_v2.0_scaffold63G21708 Striga asiatica HOM05D004907 ORTHO05D005707 1.5e-60 237.7 372 38.7
Carub.0001s2297 Capsella rubella HOM05D004907 ORTHO05D005707 2.6e-60 236.9 367 36.5
Lalb_Chr09g0326261 Lupinus albus HOM05D004907 ORTHO05D005707 4.4e-60 236.1 355 37.2
ATR1091G111 Amborella trichopoda HOM05D004907 ORTHO05D005707 3.7e-59 233.0 362 37.6
CDE06G1150 Ceratophyllum demersum HOM05D004907 ORTHO05D005707 3.5e-57 226.5 311 36.7
Oeu056728.1 Olea europaea HOM05D004907 ORTHO05D005707 7.6e-52 208.8 286 37.8
Actinidia08149 Actinidia chinensis HOM05D004907 ORTHO05D005707 1.7e-51 207.6 260 40.4
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 2.1e-46 190.7 222 41.0
PSO478G2945 Papaver somniferum HOM05D004907 ORTHO05D005707 3.1e-45 186.8 177 49.2
PSO357G0455 Papaver somniferum HOM05D004907 ORTHO05D005707 1.2e-41 174.9 222 41.0
MD13G1280300 Malus domestica HOM05D004907 ORTHO05D005707 1.9e-39 167.5 185 44.9
Nn3g16812 Nelumbo nucifera HOM05D004907 ORTHO05D005707 2.6e-36 157.1 197 40.6
COL.COLO4_24217 Corchorus olitorius HOM05D004907 ORTHO05D005707 2.5e-31 140.6 207 34.3
Cfa009183 Carpinus fangiana HOM05D004907 ORTHO05D005707 1.4e-26 124.8 126 50.8
Zm00001eb155550 Zea mays HOM05D004907 ORTHO05D005707 9.3e-26 122.1 397 26.4
HPP92_008048 Vanilla planifolia HOM05D004907 ORTHO05D005707 7.9e-25 119.0 350 27.4
TPR.G21504 Trifolium pratense HOM05D004907 ORTHO05D005707 6.7e-24 115.9 156 38.5
Actinidia23732 Actinidia chinensis HOM05D007853 ORTHO05D009873 8.7e-24 115.5 356 26.7
Actinidia09494 Actinidia chinensis HOM05D007853 ORTHO05D009873 1.3e-22 111.7 376 25.8
Medtr0197s0070 Medicago truncatula HOM05D007853 ORTHO05D009873 3.2e-18 97.1 345 27.0
Medtr7g059040 Medicago truncatula HOM05D007853 ORTHO05D009873 3.2e-18 97.1 345 27.0
Os02g0465600 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 7.1e-18 95.9 227 30.4
TPR.G15291 Trifolium pratense HOM05D007853 ORTHO05D009873 9.3e-18 95.5 342 26.9
Cfa002555 Carpinus fangiana HOM05D007853 ORTHO05D009873 2.1e-17 94.4 347 26.2
Psat3g143800 Pisum sativum HOM05D007853 ORTHO05D009873 3.0e-16 90.5 340 27.9
Ca_07539_v3 Cicer arietinum L. HOM05D007853 ORTHO05D009873 1.5e-15 88.2 351 27.1
Glyma.08G356100 Glycine max HOM05D007853 ORTHO05D009873 3.3e-15 87.0 350 24.9
unitig_8.g2924 Utricularia gibba HOM05D004907 ORTHO05D005707 1.3e-14 85.1 114 40.4
Glyma.18G173200 Glycine max HOM05D007853 ORTHO05D009873 1.6e-14 84.7 347 23.6
ATR0787G102 Amborella trichopoda HOM05D007853 ORTHO05D009873 1.1e-13 82.0 340 25.6
unitig_8.g2923 Utricularia gibba HOM05D004907 ORTHO05D005707 1.4e-13 81.6 87 44.8
Nn2g13938 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.8e-13 81.3 90 43.3
Pp3c10_6380 Physcomitrium patens HOM05D007853 ORTHO05D009873 2.0e-12 77.8 309 24.9
Pp3c2_14180 Physcomitrium patens HOM05D007853 ORTHO05D009873 5.8e-12 76.3 328 23.5
Nn2g13937 Nelumbo nucifera HOM05D004907 ORTHO05D005707 2.2e-11 74.3 73 50.7
Pp3c19_15800 Physcomitrium patens HOM05D007753 ORTHO05D009385 9.3e-10 68.9 351 21.7
Mapoly0098s0011 Marchantia polymorpha HOM05D007853 ORTHO05D009873 6.1e-09 66.2 302 24.5
TPR.G18320 Trifolium pratense HOM05D004907 ORTHO05D005707 7.9e-09 65.9 103 38.8
unitig_8.g2925 Utricularia gibba HOM05D004907 ORTHO05D005707 2.5e-07 60.8 86 38.4


User provided reference genes

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