Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G025450 Citrullus lanatus HOM05D003831 ORTHO05D004440 1.9e-36 155.2 72 100.0
CsaV3_5G031450 Cucumis sativus L. HOM05D003831 ORTHO05D004440 4.2e-36 154.1 72 98.6
RcHm_v2.0_Chr4g0441961 Rosa chinensis HOM05D003831 ORTHO05D004440 3.3e-33 144.4 69 92.8
CANSAT01G0447 Cannabis sativa HOM05D003831 ORTHO05D004440 4.3e-33 144.1 69 94.2
CANSAT01G0707 Cannabis sativa HOM05D003831 ORTHO05D004440 4.3e-33 144.1 69 94.2
RcHm_v2.0_Chr5g0051151 Rosa chinensis HOM05D003831 ORTHO05D004440 7.4e-33 143.3 69 91.3
Glyma.06G096400 Glycine max HOM05D003831 ORTHO05D004440 1.3e-32 142.5 70 90.0
AL2G14420 Arabidopsis lyrata HOM05D003831 ORTHO05D004440 1.6e-32 142.1 69 91.3
AT1G61700 Arabidopsis thaliana HOM05D003831 ORTHO05D004440 1.6e-32 142.1 69 91.3
Carub.0002s0336 Capsella rubella HOM05D003831 ORTHO05D004440 1.6e-32 142.1 69 91.3
Eucgr.C02278 Eucalyptus grandis HOM05D003831 ORTHO05D004440 1.6e-32 142.1 69 91.3
AUR62001616 Chenopodium quinoa HOM05D003831 ORTHO05D004440 2.1e-32 141.7 69 91.3
Glyma.04G094900 Glycine max HOM05D003831 ORTHO05D004440 2.1e-32 141.7 69 91.3
CSS0003899 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 2.8e-32 141.4 69 91.3
Cc05_g00640 Coffea canephora HOM05D003831 ORTHO05D004440 2.8e-32 141.4 69 91.3
DCAR_018638 Daucus carota HOM05D003831 ORTHO05D004440 2.8e-32 141.4 69 91.3
Duzib268G1541 Durio zibethinus HOM05D003831 ORTHO05D004440 2.8e-32 141.4 69 91.3
Gohir.A03G138000 Gossypium hirsutum HOM05D003831 ORTHO05D004440 2.8e-32 141.4 69 91.3
Gohir.A12G143800 Gossypium hirsutum HOM05D003831 ORTHO05D004440 2.8e-32 141.4 69 91.3
Gohir.D02G161000 Gossypium hirsutum HOM05D003831 ORTHO05D004440 2.8e-32 141.4 69 91.3
Gohir.D12G148500 Gossypium hirsutum HOM05D003831 ORTHO05D004440 2.8e-32 141.4 69 91.3
Gorai.005G181100 Gossypium raimondii HOM05D003831 ORTHO05D004440 2.8e-32 141.4 69 91.3
Gorai.008G159800 Gossypium raimondii HOM05D003831 ORTHO05D004440 2.8e-32 141.4 69 91.3
Hma1.2p1_0052F.1_g030070 Hydrangea macrophylla HOM05D003831 ORTHO05D004440 2.8e-32 141.4 69 91.3
Hma1.2p1_0226F.1_g095410 Hydrangea macrophylla HOM05D003831 ORTHO05D004440 2.8e-32 141.4 69 91.3
Potri.003G102900 Populus trichocarpa HOM05D003831 ORTHO05D004440 2.8e-32 141.4 69 91.3
Potri.006G136300 Populus trichocarpa HOM05D003831 ORTHO05D004440 2.8e-32 141.4 69 91.3
Prupe.1G250300 Prunus persica HOM05D003831 ORTHO05D004440 2.8e-32 141.4 69 91.3
Thecc.09G367000 Theobroma cacao HOM05D003831 ORTHO05D004440 2.8e-32 141.4 69 91.3
GSVIVG01013776001 Vitis vinifera HOM05D003831 ORTHO05D004440 2.8e-32 141.4 69 91.3
PGR102G1072 Punica granatum HOM05D003831 ORTHO05D004440 3.7e-32 141.0 69 89.9
PGR119G1391 Punica granatum HOM05D003831 ORTHO05D004440 3.7e-32 141.0 69 89.9
vmacro14731 Vaccinium macrocarpon HOM05D003831 ORTHO05D004440 3.7e-32 141.0 69 89.9
Thhalv10023792m.g Eutrema salsugineum HOM05D003831 ORTHO05D004440 4.8e-32 140.6 69 89.9
Glyma.01G029400 Glycine max HOM05D003831 ORTHO05D004440 4.8e-32 140.6 69 89.9
Glyma.02G035900 Glycine max HOM05D003831 ORTHO05D004440 4.8e-32 140.6 69 89.9
ATR0661G047 Amborella trichopoda HOM05D003831 ORTHO05D004440 6.2e-32 140.2 69 89.9
ATR0763G101 Amborella trichopoda HOM05D003831 ORTHO05D004440 6.2e-32 140.2 69 89.9
Cpa.g.sc12.279 Carica papaya HOM05D003831 ORTHO05D004440 6.2e-32 140.2 69 89.9
FvH4_4g32930 Fragaria vesca HOM05D003831 ORTHO05D004440 6.2e-32 140.2 69 89.9
FAN09G4060 Fragaria x ananassa HOM05D003831 ORTHO05D004440 6.2e-32 140.2 69 89.9
FAN12G2747 Fragaria x ananassa HOM05D003831 ORTHO05D004440 6.2e-32 140.2 69 89.9
FAN17G2711 Fragaria x ananassa HOM05D003831 ORTHO05D004440 6.2e-32 140.2 69 89.9
FAN22G0891 Fragaria x ananassa HOM05D003831 ORTHO05D004440 6.2e-32 140.2 69 89.9
MD05G1050000 Malus domestica HOM05D003831 ORTHO05D004440 6.2e-32 140.2 69 89.9
MD10G1057300 Malus domestica HOM05D003831 ORTHO05D004440 6.2e-32 140.2 69 89.9
Manes.12G047300 Manihot esculenta HOM05D003831 ORTHO05D004440 6.2e-32 140.2 69 89.9
Nn2g14078 Nelumbo nucifera HOM05D003831 ORTHO05D004440 6.2e-32 140.2 69 89.9
Nn4g22720 Nelumbo nucifera HOM05D003831 ORTHO05D004440 6.2e-32 140.2 69 89.9
THA.LOC104809603 Tarenaya hassleriana HOM05D003831 ORTHO05D004440 6.2e-32 140.2 69 89.9
THA.LOC104819397 Tarenaya hassleriana HOM05D003831 ORTHO05D004440 6.2e-32 140.2 69 89.9
Dinv12651 Davidia involucrata HOM05D003831 ORTHO05D004440 8.1e-32 139.8 69 89.9
Dinv19174 Davidia involucrata HOM05D003831 ORTHO05D004440 8.1e-32 139.8 69 89.9
Phvul.009G036800 Phaseolus vulgaris HOM05D003831 ORTHO05D004440 8.1e-32 139.8 69 89.9
SEGI_11017 Sequoiadendron giganteum HOM05D003831 ORTHO05D004440 8.1e-32 139.8 69 88.4
BcaB04g20364 Brassica carinata HOM05D003831 ORTHO05D004440 1.1e-31 139.4 69 88.4
Sed0002295 Sechium edule HOM05D003831 ORTHO05D004440 1.1e-31 139.4 70 88.6
AagrBONN_evm.TU.Sc2ySwM_368.1682 Anthoceros agrestis HOM05D003831 ORTHO05D004440 1.4e-31 139.0 69 88.4
CiPaw.05G186000 Carya illinoinensis HOM05D003831 ORTHO05D004440 1.4e-31 139.0 69 88.4
CiPaw.06G070400 Carya illinoinensis HOM05D003831 ORTHO05D004440 1.4e-31 139.0 69 88.4
CsaV3_2G032780 Cucumis sativus L. HOM05D003831 ORTHO05D004440 1.4e-31 139.0 69 89.9
HanXRQChr04g0108041 Helianthus annuus HOM05D003831 ORTHO05D004440 1.4e-31 139.0 69 88.4
HanXRQChr14g0445611 Helianthus annuus HOM05D003831 ORTHO05D004440 1.4e-31 139.0 69 88.4
Lsat_1_v5_gn_8_89360 Lactuca sativa HOM05D003831 ORTHO05D004440 1.4e-31 139.0 69 88.4
Mapoly0054s0132 Marchantia polymorpha HOM05D003831 ORTHO05D004440 1.4e-31 139.0 69 88.4
arahy.Tifrunner.gnm1.ann1.5T40TZ Arachis hypogaea HOM05D003831 ORTHO05D004440 1.8e-31 138.7 69 88.4
arahy.Tifrunner.gnm1.ann1.TXPA6B Arachis hypogaea HOM05D003831 ORTHO05D004440 1.8e-31 138.7 69 88.4
arahy.Tifrunner.gnm1.ann1.Y183F3 Arachis hypogaea HOM05D003831 ORTHO05D004440 1.8e-31 138.7 69 88.4
Lalb_Chr05g0228561 Lupinus albus HOM05D003831 ORTHO05D004440 1.8e-31 138.7 69 88.4
Sp2g02850 Schrenkiella parvula HOM05D003831 ORTHO05D004440 1.8e-31 138.7 69 87.0
Lj2g0005470 Lotus japonicus HOM05D003831 ORTHO05D004440 2.4e-31 138.3 69 88.4
Lj2g0012017 Lotus japonicus HOM05D003831 ORTHO05D004440 2.4e-31 138.3 69 88.4
Lj2g0021234 Lotus japonicus HOM05D003831 ORTHO05D004440 2.4e-31 138.3 69 88.4
Manes.13G049300 Manihot esculenta HOM05D003831 ORTHO05D004440 2.4e-31 138.3 69 88.4
TWI18G0137 Tripterygium wilfordii HOM05D003831 ORTHO05D004440 2.4e-31 138.3 69 88.4
Os11g0194800 Oryza sativa ssp. japonica HOM05D003831 ORTHO05D004440 3.1e-31 137.9 69 88.4
Os12g0180400 Oryza sativa ssp. japonica HOM05D003831 ORTHO05D004440 3.1e-31 137.9 69 88.4
ClCG08G017910 Citrullus lanatus HOM05D003831 ORTHO05D004440 4.0e-31 137.5 69 88.4
Medtr5g034050 Medicago truncatula HOM05D003831 ORTHO05D004440 4.0e-31 137.5 69 88.4
CAN.G874.5 Capsicum annuum HOM05D003831 ORTHO05D004440 6.9e-31 136.7 69 88.4
Ciclev10033492m.g Citrus clementina HOM05D003831 ORTHO05D004440 6.9e-31 136.7 69 88.4
Haze_22255 Corylus avellana HOM05D003831 ORTHO05D004440 6.9e-31 136.7 69 85.5
ECA236G1103 Erigeron canadensis HOM05D003831 ORTHO05D004440 6.9e-31 136.7 69 87.0
Nitab4.5_0003020g0070 Nicotiana tabacum HOM05D003831 ORTHO05D004440 6.9e-31 136.7 69 88.4
Nitab4.5_0009005g0010 Nicotiana tabacum HOM05D003831 ORTHO05D004440 6.9e-31 136.7 69 88.4
Peaxi162Scf00515g00317 Petunia axillaris HOM05D003831 ORTHO05D004440 6.9e-31 136.7 69 88.4
Pp3c1_41980 Physcomitrium patens HOM05D003831 ORTHO05D004440 6.9e-31 136.7 69 87.0
Solyc06g083360.3 Solanum lycopersicum HOM05D003831 ORTHO05D004440 6.9e-31 136.7 69 88.4
Sopen06g034730 Solanum pennellii HOM05D003831 ORTHO05D004440 6.9e-31 136.7 69 88.4
Psat2g105160 Pisum sativum HOM05D003831 ORTHO05D004440 9.0e-31 136.3 69 87.0
Aa31LG2G9120 Aethionema arabicum HOM05D003831 ORTHO05D004440 1.2e-30 136.0 69 87.0
Migut.C01236 Erythranthe guttata HOM05D003831 ORTHO05D004440 1.2e-30 136.0 69 88.4
QL03p059349 Quercus lobata HOM05D003831 ORTHO05D004440 1.2e-30 136.0 69 85.5
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 1.2e-30 136.0 69 88.4
SalBow6G3444 Salvia bowleyana HOM05D003831 ORTHO05D004440 1.2e-30 136.0 69 88.4
Lalb_Chr16g0382181 Lupinus albus HOM05D003831 ORTHO05D004440 1.5e-30 135.6 69 87.0
PSO063G5975 Papaver somniferum HOM05D003831 ORTHO05D004440 2.0e-30 135.2 69 85.5
PSO832G3076 Papaver somniferum HOM05D003831 ORTHO05D004440 2.0e-30 135.2 69 85.5
QL03p062311 Quercus lobata HOM05D003831 ORTHO05D004440 2.6e-30 134.8 69 85.5
QL03p062353 Quercus lobata HOM05D003831 ORTHO05D004440 2.6e-30 134.8 69 85.5
SMO358G0606 Selaginella moellendorffii HOM05D003831 ORTHO05D004440 3.4e-30 134.4 64 93.8
BcaB03g13254 Brassica carinata HOM05D003831 ORTHO05D004440 4.5e-30 134.0 69 85.5
BcaC05g25023 Brassica carinata HOM05D003831 ORTHO05D004440 4.5e-30 134.0 69 85.5
BcaC07g38667 Brassica carinata HOM05D003831 ORTHO05D004440 4.5e-30 134.0 69 85.5
A06p08090 Brassica napus HOM05D003831 ORTHO05D004440 4.5e-30 134.0 69 85.5
A08p33450 Brassica napus HOM05D003831 ORTHO05D004440 4.5e-30 134.0 69 85.5
C05p09670 Brassica napus HOM05D003831 ORTHO05D004440 4.5e-30 134.0 69 85.5
BolC5t29708H Brassica oleracea HOM05D003831 ORTHO05D004440 4.5e-30 134.0 69 85.5
BolC8t49100H Brassica oleracea HOM05D003831 ORTHO05D004440 4.5e-30 134.0 69 85.5
BraA08t35261Z Brassica rapa HOM05D003831 ORTHO05D004440 4.5e-30 134.0 69 85.5
Sp1g10090 Schrenkiella parvula HOM05D003831 ORTHO05D004440 4.5e-30 134.0 69 85.5
TPR.G30065 Trifolium pratense HOM05D003831 ORTHO05D004440 5.8e-30 133.7 69 84.1
Thhalv10009269m.g Eutrema salsugineum HOM05D003831 ORTHO05D004440 7.6e-30 133.3 69 85.5
AL1G22580 Arabidopsis lyrata HOM05D003831 ORTHO05D004440 1.0e-29 132.9 69 85.5
AT1G11475 Arabidopsis thaliana HOM05D003831 ORTHO05D004440 1.0e-29 132.9 69 85.5
C01p38960 Brassica napus HOM05D003831 ORTHO05D004440 1.0e-29 132.9 70 85.7
Carub.0001s1108 Capsella rubella HOM05D003831 ORTHO05D004440 1.0e-29 132.9 69 85.5
Carub.0005s0891 Capsella rubella HOM05D003831 ORTHO05D004440 1.0e-29 132.9 69 85.5
Ca_03143_v3 Cicer arietinum L. HOM05D003831 ORTHO05D004440 1.0e-29 132.9 67 86.6
Haze_03725 Corylus avellana HOM05D003831 ORTHO05D004440 1.0e-29 132.9 64 92.2
Zm00001eb366170 Zea mays HOM05D003831 ORTHO05D004440 1.0e-29 132.9 69 85.5
Zm00001eb408310 Zea mays HOM05D003831 ORTHO05D004440 1.0e-29 132.9 69 85.5
Oeu023101.1 Olea europaea HOM05D003831 ORTHO05D004440 1.3e-29 132.5 64 92.2
Oeu030583.1 Olea europaea HOM05D003831 ORTHO05D004440 1.3e-29 132.5 64 92.2
Sabra03G0070100 Salix brachista HOM05D003831 ORTHO05D004440 1.3e-29 132.5 64 92.2
Aqoxy3G02890 Aquilegia oxysepala HOM05D003831 ORTHO05D004440 1.7e-29 132.1 63 93.7
CARHR011740 Cardamine hirsuta HOM05D003831 ORTHO05D004440 1.7e-29 132.1 69 85.5
CARHR255430 Cardamine hirsuta HOM05D003831 ORTHO05D004440 1.7e-29 132.1 69 85.5
Sabra06G0106500 Salix brachista HOM05D003831 ORTHO05D004440 1.7e-29 132.1 63 93.7
SGA_v2.0_scaffold118G32461 Striga asiatica HOM05D002896 ORTHO05D003263 1.7e-29 132.1 63 93.7
TAR622G1207 Trochodendron aralioides HOM05D003831 ORTHO05D004440 1.7e-29 132.1 63 93.7
A01p30570 Brassica napus HOM05D003831 ORTHO05D004440 2.2e-29 131.7 64 90.6
Sc05g0001950 Simmondsia chinensis HOM05D003831 ORTHO05D004440 2.9e-29 131.3 81 76.5
Lsat_1_v5_gn_9_15080 Lactuca sativa HOM05D003831 ORTHO05D004440 3.8e-29 131.0 63 92.1
Medtr4g075600 Medicago truncatula HOM05D003831 ORTHO05D004440 3.8e-29 131.0 64 90.6
Actinidia39431 Actinidia chinensis HOM05D003831 ORTHO05D004440 8.4e-29 129.8 64 90.6
PRCOL_00001275 Prasinoderma coloniale HOM05D003831 ORTHO05D004440 8.4e-29 129.8 69 82.6
Cre13.g571650 Chlamydomonas reinhardtii HOM05D003831 ORTHO05D004440 1.1e-28 129.4 68 85.3
MELO3C030275.2 Cucumis melo HOM05D003831 ORTHO05D004440 1.1e-28 129.4 63 92.1
Atru.chr11.2061 Acer truncatum HOM05D003831 ORTHO05D004440 1.4e-28 129.0 64 89.1
CDE06G1630 Ceratophyllum demersum HOM05D003831 ORTHO05D004440 1.9e-28 128.6 88 70.5
unitig_62.g23596 Utricularia gibba HOM05D003831 ORTHO05D004440 1.9e-28 128.6 64 90.6
MBI10_g21415_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 2.5e-28 128.3 69 85.5
PGSC0003DMG400020165 Solanum tuberosum HOM05D003831 ORTHO05D004440 3.2e-28 127.9 64 89.1
MBI16_g09348_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 4.2e-28 127.5 67 86.6
MBI16_g42769_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 4.2e-28 127.5 67 86.6
Medtr5g034040 Medicago truncatula HOM05D003831 ORTHO05D004440 4.2e-28 127.5 67 82.1
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 4.2e-28 127.5 63 90.5
MCO02G327 Micromonas commoda HOM05D003831 ORTHO05D004440 7.1e-28 126.7 69 81.2
EL10Ac7g17904 Beta vulgaris HOM05D003831 ORTHO05D004440 9.3e-28 126.3 69 85.5
BraA06t24008Z Brassica rapa HOM05D003831 ORTHO05D004440 9.3e-28 126.3 64 87.5
MELO3C034128.2 Cucumis melo HOM05D003831 ORTHO05D004440 9.3e-28 126.3 62 93.5
BolC1t03846H Brassica oleracea HOM05D003831 ORTHO05D004440 4.6e-27 124.0 101 61.4
Haze_26646 Corylus avellana HOM05D003831 ORTHO05D004440 1.3e-26 122.5 67 80.6
BraA01t03189Z Brassica rapa HOM05D003831 ORTHO05D004440 2.1e-24 115.2 121 50.4
MBI05_g22037_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 4.8e-24 114.0 57 89.5
SGA_v2.0_scaffold24G10536 Striga asiatica HOM05D003831 ORTHO05D004440 4.8e-24 114.0 57 89.5
Sed0002376 Sechium edule HOM05D003831 ORTHO05D004440 1.1e-23 112.8 69 75.4
MBI14_g22904_MAGBIO Magnolia biondii HOM05D000106 ORTHO05D002214 9.0e-23 109.8 57 86.0
CBR_g48986 Chara braunii HOM05D003831 ORTHO05D004440 1.2e-22 109.4 56 83.9
ClCG08G007960 Citrullus lanatus HOM05D003831 ORTHO05D004440 2.0e-22 108.6 53 88.7
FAN21G2637 Fragaria x ananassa HOM05D003831 ORTHO05D004440 3.8e-21 104.4 53 86.8
FAN25G2861 Fragaria x ananassa HOM05D003831 ORTHO05D004440 3.8e-21 104.4 53 86.8
Rhsim13G0097000 Rhododendron simsii HOM05D003831 ORTHO05D004440 8.4e-21 103.2 120 47.5
FAN16G2980 Fragaria x ananassa HOM05D003831 ORTHO05D004440 2.5e-20 101.7 53 83.0
arahy.Tifrunner.gnm1.ann1.Z8M7EL Arachis hypogaea HOM05D003831 ORTHO05D004440 7.9e-19 96.7 69 71.0
Sed0003810 Sechium edule HOM05D003831 ORTHO05D004440 7.4e-17 90.1 70 58.6
C04p07400 Brassica napus HOM05D003831 ORTHO05D004440 1.1e-15 86.3 42 88.1
BolC4t22361H Brassica oleracea HOM05D003831 ORTHO05D004440 1.1e-15 86.3 42 88.1
Lj2g0013677 Lotus japonicus HOM05D003831 ORTHO05D004440 1.4e-15 85.9 62 58.1
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 1.9e-12 75.5 46 73.9
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 2.5e-12 75.1 88 46.6
Ah.15g093500 Amaranthus hybridus HOM05D003831 ORTHO05D004440 9.4e-12 73.2 34 91.2
CSS0011229 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 9.4e-12 73.2 33 90.9
C09p50350 Brassica napus HOM05D003831 ORTHO05D004440 1.6e-11 72.4 32 93.8
Thecc.02G253800 Theobroma cacao HOM05D003831 ORTHO05D004440 1.6e-11 72.4 32 93.8
COL.COLO4_24205 Corchorus olitorius HOM05D003831 ORTHO05D004440 4.6e-11 70.9 52 69.2
Lalb_Chr05g0216761 Lupinus albus HOM05D003831 ORTHO05D004440 4.6e-11 70.9 32 90.6
Actinidia30054 Actinidia chinensis HOM05D003831 ORTHO05D004440 1.0e-10 69.7 32 90.6
SHI17512 Sapria himalayana HOM05D000002 ORTHO05D000001 1.0e-10 69.7 54 61.1
CSS0004603 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 3.3e-09 64.7 32 90.6
MBI10_g27999_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 3.3e-09 64.7 32 90.6
arahy.Tifrunner.gnm1.ann1.GNJG0F Arachis hypogaea HOM05D003831 ORTHO05D004440 2.2e-08 62.0 32 81.2
TPR.G17155 Trifolium pratense HOM05D003831 ORTHO05D004440 3.7e-08 61.2 34 76.5


User provided reference genes

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