Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G025070 Citrullus lanatus HOM05D003884 ORTHO05D004482 2.4e-113 412.1 202 100.0
CsaV3_5G031830 Cucumis sativus L. HOM05D003884 ORTHO05D004482 1.8e-73 279.6 202 71.3
MELO3C012022.2 Cucumis melo HOM05D003884 ORTHO05D004482 2.4e-73 279.3 216 68.5
Sed0027154 Sechium edule HOM05D003884 ORTHO05D004482 2.4e-73 279.3 202 70.8
Dinv24898 Davidia involucrata HOM05D003884 ORTHO05D004482 2.9e-42 176.0 208 49.5
Prupe.1G258900 Prunus persica HOM05D003884 ORTHO05D004482 1.1e-41 174.1 201 48.8
CSS0028392 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 2.4e-41 172.9 206 48.5
Gorai.009G344500 Gossypium raimondii HOM05D003884 ORTHO05D004482 6.0e-40 168.3 170 51.8
Lsat_1_v5_gn_3_49081 Lactuca sativa HOM05D003884 ORTHO05D004482 2.3e-39 166.4 155 52.3
COL.COLO4_37908 Corchorus olitorius HOM05D003884 ORTHO05D004482 4.3e-38 162.2 167 50.9
CiPaw.05G149600 Carya illinoinensis HOM05D003884 ORTHO05D004482 5.6e-38 161.8 187 46.0
Duzib248G1263 Durio zibethinus HOM05D003884 ORTHO05D004482 1.3e-37 160.6 163 50.3
Gohir.A05G318900 Gossypium hirsutum HOM05D003884 ORTHO05D004482 1.3e-37 160.6 216 45.8
Hma1.2p1_1017F.1_g248220 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 1.6e-37 160.2 152 52.6
Gohir.D05G321100 Gossypium hirsutum HOM05D003884 ORTHO05D004482 2.1e-37 159.8 167 50.3
TWI75G1604 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 6.2e-37 158.3 190 45.8
Manes.01G197000 Manihot esculenta HOM05D003884 ORTHO05D004482 1.1e-36 157.5 144 55.6
Thecc.02G243200 Theobroma cacao HOM05D003884 ORTHO05D004482 1.8e-36 156.8 184 45.1
FAN22G1839 Fragaria x ananassa HOM05D003884 ORTHO05D004482 2.4e-36 156.4 203 45.3
Nitab4.5_0004536g0010 Nicotiana tabacum HOM05D003884 ORTHO05D004482 3.1e-36 156.0 141 53.9
FvH4_4g34960 Fragaria vesca HOM05D003884 ORTHO05D004482 6.9e-36 154.8 202 44.1
FAN12G0178 Fragaria x ananassa HOM05D003884 ORTHO05D004482 6.9e-36 154.8 202 44.1
GSVIVG01020166001 Vitis vinifera HOM05D003884 ORTHO05D004482 1.2e-35 154.1 171 47.4
FAN07G1775 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.5e-35 153.7 203 44.3
FAN17G0777 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.5e-35 153.7 203 44.8
TAR622G0672 Trochodendron aralioides HOM05D003884 ORTHO05D004482 2.6e-35 152.9 206 43.7
Haze_12163 Corylus avellana HOM05D003884 ORTHO05D004482 3.4e-35 152.5 200 44.0
AUR62026600 Chenopodium quinoa HOM05D003884 ORTHO05D004482 7.6e-35 151.4 197 45.2
Nitab4.5_0004033g0080 Nicotiana tabacum HOM05D003884 ORTHO05D004482 7.6e-35 151.4 141 53.9
Glyma.08G290900 Glycine max HOM05D003884 ORTHO05D004482 1.7e-34 150.2 190 44.2
Medtr8g063190 Medicago truncatula HOM05D003884 ORTHO05D004482 1.7e-34 150.2 169 48.5
Psat4g125600 Pisum sativum HOM05D003884 ORTHO05D004482 3.8e-34 149.1 204 41.7
MBI15_g16616_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 4.9e-34 148.7 94 66.0
Oeu001665.1 Olea europaea HOM05D003884 ORTHO05D004482 4.9e-34 148.7 94 70.2
MSTRG.2381 Avicennia marina HOM05D003884 ORTHO05D004482 1.1e-33 147.5 137 50.4
Rhsim12G0124000 Rhododendron simsii HOM05D003884 ORTHO05D004482 1.4e-33 147.1 203 41.9
Migut.E00143 Erythranthe guttata HOM05D003884 ORTHO05D004482 2.4e-33 146.4 164 45.1
Hund25320 Selenicereus undatus HOM05D003884 ORTHO05D004482 4.2e-33 145.6 196 43.9
PSO161G0071 Papaver somniferum HOM05D003884 ORTHO05D004482 9.3e-33 144.4 187 41.7
PSO478G1563 Papaver somniferum HOM05D003884 ORTHO05D004482 1.6e-32 143.7 165 44.8
ECA246G1403 Erigeron canadensis HOM05D003884 ORTHO05D004482 2.1e-32 143.3 151 48.3
Cpa.g.sc5.356 Carica papaya HOM05D003884 ORTHO05D004482 2.7e-32 142.9 194 41.8
Lj4g0012912 Lotus japonicus HOM05D003884 ORTHO05D004482 3.5e-32 142.5 201 44.3
Sopen05g002070 Solanum pennellii HOM05D003884 ORTHO05D004482 3.5e-32 142.5 197 41.6
PGSC0003DMG400015596 Solanum tuberosum HOM05D003884 ORTHO05D004482 7.8e-32 141.4 196 41.8
MBI15_g45678_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 1.0e-31 141.0 102 59.8
SGA_v2.0_scaffold87G27003 Striga asiatica HOM05D003884 ORTHO05D004482 1.3e-31 140.6 141 46.8
HPP92_017073 Vanilla planifolia HOM05D003884 ORTHO05D004482 1.7e-31 140.2 194 39.7
Peaxi162Scf00421g00615 Petunia axillaris HOM05D003884 ORTHO05D004482 3.9e-31 139.0 197 41.6
ATR1149G127 Amborella trichopoda HOM05D003884 ORTHO05D004482 2.5e-30 136.3 160 43.8
Aqoxy3G00923 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 4.3e-30 135.6 138 49.3
VMungo0251G0159 Vigna mungo HOM05D003884 ORTHO05D004482 4.3e-30 135.6 194 40.7
arahy.Tifrunner.gnm1.ann1.9N1GR3 Arachis hypogaea HOM05D003884 ORTHO05D004482 1.6e-29 133.7 103 62.1
arahy.Tifrunner.gnm1.ann1.QD9WVF Arachis hypogaea HOM05D003884 ORTHO05D004482 1.6e-29 133.7 103 62.1
CDE05G1492 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 2.1e-29 133.3 152 45.4
QL03p062328 Quercus lobata HOM05D003884 ORTHO05D004482 2.1e-29 133.3 294 32.7
Hma1.2p1_0160F.1_g070580 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 6.9e-28 128.3 139 43.9
EL10Ac6g13616 Beta vulgaris HOM05D000625 ORTHO05D000467 9.0e-28 127.9 98 59.2
Lsat_1_v5_gn_3_49121 Lactuca sativa HOM05D003884 ORTHO05D004482 1.2e-27 127.5 138 44.2
unitig_62.g23678 Utricularia gibba HOM05D003884 ORTHO05D004482 2.0e-27 126.7 137 44.5
CSS0013891 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 3.4e-27 125.9 173 41.0
Migut.L01446 Erythranthe guttata HOM05D003884 ORTHO05D004482 3.4e-27 125.9 150 43.3
Lj4g0002760 Lotus japonicus HOM05D003884 ORTHO05D004482 3.4e-27 125.9 173 41.6
RcHm_v2.0_Chr4g0444531 Rosa chinensis HOM05D003884 ORTHO05D004482 3.4e-27 125.9 190 38.4
Nitab4.5_0005722g0050 Nicotiana tabacum HOM05D003884 ORTHO05D004482 4.5e-27 125.6 139 41.0
Peaxi162Scf00421g00711 Petunia axillaris HOM05D003884 ORTHO05D004482 4.5e-27 125.6 141 41.1
Atru.chr11.1961 Acer truncatum HOM05D003884 ORTHO05D004482 7.6e-27 124.8 137 45.3
CAN.G1160.2 Capsicum annuum HOM05D003884 ORTHO05D004482 7.6e-27 124.8 159 38.4
Cc00_g22770 Coffea canephora HOM05D003884 ORTHO05D004482 7.6e-27 124.8 146 44.5
Nitab4.5_0000257g0220 Nicotiana tabacum HOM05D003884 ORTHO05D004482 7.6e-27 124.8 139 41.0
CDE10G0847 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 9.9e-27 124.4 140 42.9
QL03p062368 Quercus lobata HOM05D003884 ORTHO05D004482 9.9e-27 124.4 317 30.3
DCAR_026554 Daucus carota HOM05D003884 ORTHO05D004482 1.3e-26 124.0 138 44.9
Lj3A1049T56 Lonicera japonica HOM05D003884 ORTHO05D004482 1.3e-26 124.0 153 41.2
SGA_v2.0_scaffold8G04247 Striga asiatica HOM05D003884 ORTHO05D004482 1.3e-26 124.0 156 39.7
FvH4_4g35001 Fragaria vesca HOM05D003884 ORTHO05D004482 1.7e-26 123.6 191 36.6
Aa31LG1G4430 Aethionema arabicum HOM05D003884 ORTHO05D004482 2.9e-26 122.9 208 36.5
Ciclev10032870m.g Citrus clementina HOM05D003884 ORTHO05D004482 2.9e-26 122.9 137 46.0
Duzib248G1092 Durio zibethinus HOM05D003884 ORTHO05D004482 3.8e-26 122.5 158 41.1
Glyma.18G132900 Glycine max HOM05D003884 ORTHO05D004482 3.8e-26 122.5 154 42.2
Nn4g22884 Nelumbo nucifera HOM05D003884 ORTHO05D004482 3.8e-26 122.5 167 42.5
THA.LOC104819574 Tarenaya hassleriana HOM05D003884 ORTHO05D004482 3.8e-26 122.5 159 40.9
MSTRG.622 Avicennia marina HOM05D003884 ORTHO05D004482 4.9e-26 122.1 173 38.2
Ah.03g132360 Amaranthus hybridus HOM05D003884 ORTHO05D004482 6.4e-26 121.7 149 43.6
Dinv30997 Davidia involucrata HOM05D003884 ORTHO05D004482 8.4e-26 121.3 171 40.4
Dinv31106 Davidia involucrata HOM05D003884 ORTHO05D004482 8.4e-26 121.3 171 40.4
FAN07G1004 Fragaria x ananassa HOM05D003884 ORTHO05D004482 8.4e-26 121.3 191 36.1
FAN12G1036 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.4e-25 120.6 191 36.1
Gohir.A03G142500 Gossypium hirsutum HOM05D003884 ORTHO05D004482 1.4e-25 120.6 167 41.3
PGSC0003DMG400015599 Solanum tuberosum HOM05D003884 ORTHO05D004482 1.4e-25 120.6 139 41.0
Solyc05g006110.3 Solanum lycopersicum HOM05D003884 ORTHO05D004482 1.9e-25 120.2 139 41.0
Sopen05g002130 Solanum pennellii HOM05D003884 ORTHO05D004482 1.9e-25 120.2 139 41.0
AT1G10522 Arabidopsis thaliana HOM05D003884 ORTHO05D004482 3.2e-25 119.4 159 41.5
CDE10G0415 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 3.2e-25 119.4 164 39.0
Lalb_Chr05g0228011 Lupinus albus HOM05D003884 ORTHO05D004482 3.2e-25 119.4 165 41.2
Thecc.02G242500 Theobroma cacao HOM05D003884 ORTHO05D004482 3.2e-25 119.4 172 39.5
AL1G21330 Arabidopsis lyrata HOM05D003884 ORTHO05D004482 4.2e-25 119.0 154 40.3
CARHR010670 Cardamine hirsuta HOM05D003884 ORTHO05D004482 4.2e-25 119.0 154 40.3
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 4.2e-25 119.0 188 36.7
Medtr8g063150 Medicago truncatula HOM05D003884 ORTHO05D004482 4.2e-25 119.0 162 41.4
Actinidia27769 Actinidia chinensis HOM05D003884 ORTHO05D004482 5.4e-25 118.6 142 42.3
Gorai.005G185900 Gossypium raimondii HOM05D003884 ORTHO05D004482 5.4e-25 118.6 149 40.9
Rhsim12G0124300 Rhododendron simsii HOM05D003884 ORTHO05D004482 5.4e-25 118.6 143 42.7
Atru.chr11.1968 Acer truncatum HOM05D003884 ORTHO05D004482 7.1e-25 118.2 78 67.9
Thhalv10008855m.g Eutrema salsugineum HOM05D003884 ORTHO05D004482 7.1e-25 118.2 154 40.3
Oeu001657.1 Olea europaea HOM05D003884 ORTHO05D004482 7.1e-25 118.2 172 40.7
Sc14g0008540 Simmondsia chinensis HOM05D003884 ORTHO05D004482 7.1e-25 118.2 165 40.6
Actinidia08183 Actinidia chinensis HOM05D003884 ORTHO05D004482 9.3e-25 117.9 142 41.5
Carub.0001s0996 Capsella rubella HOM05D003884 ORTHO05D004482 9.3e-25 117.9 194 37.6
Gohir.D02G165800 Gossypium hirsutum HOM05D003884 ORTHO05D004482 9.3e-25 117.9 149 40.9
VMungo0251G2950 Vigna mungo HOM05D003884 ORTHO05D004482 9.3e-25 117.9 185 36.2
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 1.2e-24 117.5 165 40.0
MD16G1086800 Malus domestica HOM05D003884 ORTHO05D004482 1.6e-24 117.1 185 35.7
Potri.010G094900 Populus trichocarpa HOM05D003884 ORTHO05D004482 1.6e-24 117.1 193 36.8
PGR119G0467 Punica granatum HOM05D003884 ORTHO05D004482 1.6e-24 117.1 140 40.0
BcaC05g24871 Brassica carinata HOM05D003884 ORTHO05D004482 2.1e-24 116.7 146 41.8
A06p07300 Brassica napus HOM05D003884 ORTHO05D004482 2.1e-24 116.7 146 41.8
C05p08810 Brassica napus HOM05D003884 ORTHO05D004482 2.1e-24 116.7 146 41.8
BolC5t29627H Brassica oleracea HOM05D003884 ORTHO05D004482 2.1e-24 116.7 146 41.8
BraA06t23935Z Brassica rapa HOM05D003884 ORTHO05D004482 2.1e-24 116.7 146 41.8
MD13G1086700 Malus domestica HOM05D003884 ORTHO05D004482 2.1e-24 116.7 198 36.4
Phvul.003G054800 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 2.1e-24 116.7 83 62.7
TAR629G2251 Trochodendron aralioides HOM05D003884 ORTHO05D004482 2.1e-24 116.7 171 39.2
Aqoxy3G03081 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 2.7e-24 116.3 137 43.1
EL10Ac4g10087 Beta vulgaris HOM05D003884 ORTHO05D004482 2.7e-24 116.3 181 38.1
BcaC05g24933 Brassica carinata HOM05D003884 ORTHO05D004482 2.7e-24 116.3 146 41.8
PSO832G2848 Papaver somniferum HOM05D003884 ORTHO05D004482 2.7e-24 116.3 137 42.3
Cpa.g.sc5.349 Carica papaya HOM05D003884 ORTHO05D004482 3.5e-24 115.9 194 35.1
MELO3C012025.2 Cucumis melo HOM05D003884 ORTHO05D004482 3.5e-24 115.9 181 37.6
Eucgr.B02560 Eucalyptus grandis HOM05D003884 ORTHO05D004482 3.5e-24 115.9 140 41.4
Sp1g09160 Schrenkiella parvula HOM05D003884 ORTHO05D004482 3.5e-24 115.9 146 41.1
Prupe.1G259800 Prunus persica HOM05D003884 ORTHO05D004482 4.6e-24 115.5 196 34.7
Sed0006672 Sechium edule HOM05D003884 ORTHO05D004482 4.6e-24 115.5 169 37.9
PSO063G2462 Papaver somniferum HOM05D003884 ORTHO05D004482 7.9e-24 114.8 140 40.7
arahy.Tifrunner.gnm1.ann1.W247EX Arachis hypogaea HOM05D003884 ORTHO05D004482 1.0e-23 114.4 166 39.2
GSVIVG01020172001 Vitis vinifera HOM05D003884 ORTHO05D004482 1.0e-23 114.4 176 38.6
ClCG05G025040 Citrullus lanatus HOM05D003884 ORTHO05D004482 1.3e-23 114.0 166 36.7
TPR.G40428 Trifolium pratense HOM05D003884 ORTHO05D004482 1.3e-23 114.0 62 77.4
CsaV3_5G031870 Cucumis sativus L. HOM05D003884 ORTHO05D004482 1.8e-23 113.6 188 35.6
Phvul.003G055100 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 1.8e-23 113.6 157 38.9
ECA238G2328 Erigeron canadensis HOM05D003884 ORTHO05D004482 3.0e-23 112.8 92 52.2
Sabra10G0067200 Salix brachista HOM05D003884 ORTHO05D004482 3.0e-23 112.8 156 40.4
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 3.9e-23 112.5 179 38.5
AUR62039407 Chenopodium quinoa HOM05D003884 ORTHO05D004482 3.9e-23 112.5 139 41.0
Manes.05G090800 Manihot esculenta HOM05D003884 ORTHO05D004482 3.9e-23 112.5 137 40.9
PGR102G1298 Punica granatum HOM05D003884 ORTHO05D004482 5.1e-23 112.1 190 37.9
QL03p062483 Quercus lobata HOM05D003884 ORTHO05D004482 5.1e-23 112.1 151 39.7
Ca_22779_v3 Cicer arietinum L. HOM05D003884 ORTHO05D004482 6.7e-23 111.7 175 37.7
HPP92_010213 Vanilla planifolia HOM05D003884 ORTHO05D004482 1.1e-22 110.9 206 34.5
Haze_12138 Corylus avellana HOM05D003884 ORTHO05D004482 2.5e-22 109.8 179 38.5
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 3.3e-22 109.4 99 49.5
Zm00001eb098980 Zea mays HOM05D003884 ORTHO05D004482 9.6e-22 107.8 139 38.8
TWI36G1174 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 1.6e-21 107.1 208 33.7
COL.COLO4_38097 Corchorus olitorius HOM05D003884 ORTHO05D004482 2.1e-21 106.7 159 37.7
ATR1149G058 Amborella trichopoda HOM05D003884 ORTHO05D004482 2.8e-21 106.3 136 39.7
CANSAT11G1742 Cannabis sativa HOM05D003884 ORTHO05D004482 2.8e-21 106.3 154 39.6
CiPaw.05G146300 Carya illinoinensis HOM05D003884 ORTHO05D004482 3.7e-21 105.9 191 34.6
Os09g0382400 Oryza sativa ssp. japonica HOM05D003884 ORTHO05D004482 8.1e-21 104.8 139 38.8
Psat4g126120 Pisum sativum HOM05D003884 ORTHO05D004482 8.1e-21 104.8 166 37.3
CSS0008150 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 9.0e-20 101.3 78 59.0
SalBow2G1244 Salvia bowleyana HOM05D003884 ORTHO05D004482 1.1e-17 94.4 194 34.0
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 1.1e-17 94.4 191 34.0
vmacro16279 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 4.6e-16 89.0 202 32.7
MBI15_g14835_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 6.0e-16 88.6 58 63.8
MD16G1087000 Malus domestica HOM05D003884 ORTHO05D004482 7.9e-16 88.2 58 63.8
TPR.G35986 Trifolium pratense HOM05D003884 ORTHO05D004482 6.7e-15 85.1 59 59.3
Medtr2g099400 Medicago truncatula HOM05D000001 ORTHO05D011365 6.2e-13 78.6 52 61.5
vmacro16296 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 1.1e-09 67.8 99 39.4
CSS0019058 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 2.1e-08 63.5 146 36.3
MD13G1087300 Malus domestica HOM05D003884 ORTHO05D004482 2.3e-07 60.1 141 34.8
AUR62005315 Chenopodium quinoa HOM05D003884 ORTHO05D004482 8.7e-07 58.2 139 33.8
Oeu001664.1 Olea europaea HOM05D003884 ORTHO05D004482 2.5e-06 56.6 84 39.3


User provided reference genes

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