Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G020560 Citrullus lanatus HOM05D001879 ORTHO05D007957 0.0e+00 1839.7 960 100.0
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 0.0e+00 1503.0 916 87.6
CsaV3_4G035000 Cucumis sativus L. HOM05D001879 ORTHO05D007957 0.0e+00 1497.3 902 88.5
Sed0020869 Sechium edule HOM05D001879 ORTHO05D007957 6.6e-312 1073.5 716 79.9
Cfa013682 Carpinus fangiana HOM05D001879 ORTHO05D007957 3.4e-274 948.7 927 59.4
Gorai.002G135500 Gossypium raimondii HOM05D001879 ORTHO05D007957 1.0e-270 937.2 930 58.1
Gohir.A01G122900 Gossypium hirsutum HOM05D001879 ORTHO05D007957 7.3e-269 931.0 939 57.2
QL12p037915 Quercus lobata HOM05D001879 ORTHO05D007957 5.2e-267 924.9 921 59.1
Gohir.D01G110700 Gossypium hirsutum HOM05D001879 ORTHO05D007957 5.7e-266 921.4 948 56.6
CANSAT11G0135 Cannabis sativa HOM05D001879 ORTHO05D007957 4.1e-264 915.2 927 57.3
TWI56G1363 Tripterygium wilfordii HOM05D001879 ORTHO05D007957 6.6e-262 907.9 951 55.5
MD15G1071100 Malus domestica HOM05D001879 ORTHO05D007957 1.8e-259 899.8 917 57.5
CiPaw.07G175800 Carya illinoinensis HOM05D001879 ORTHO05D007957 4.0e-259 898.7 922 56.5
Dinv44961 Davidia involucrata HOM05D001879 ORTHO05D007957 1.1e-256 890.6 820 60.1
Phvul.009G071000 Phaseolus vulgaris HOM05D001879 ORTHO05D007957 6.0e-255 884.8 918 55.7
MD08G1085900 Malus domestica HOM05D001879 ORTHO05D007957 2.3e-254 882.9 960 55.1
Glyma.04G045100 Glycine max HOM05D001879 ORTHO05D007957 1.5e-253 880.2 912 55.0
Hma1.2p1_0210F.1_g089520 Hydrangea macrophylla HOM05D001879 ORTHO05D007957 1.9e-253 879.8 918 55.2
FAN15G2911 Fragaria x ananassa HOM05D001879 ORTHO05D007957 7.3e-253 877.9 936 56.0
RcHm_v2.0_Chr6g0309461 Rosa chinensis HOM05D001879 ORTHO05D007957 1.2e-252 877.1 825 60.2
VMungo1309G0716 Vigna mungo HOM05D001879 ORTHO05D007957 1.2e-252 877.1 908 55.3
Potri.014G016900 Populus trichocarpa HOM05D001879 ORTHO05D007957 2.8e-252 875.9 917 56.1
FvH4_2g33210 Fragaria vesca HOM05D001879 ORTHO05D007957 6.2e-252 874.8 936 55.9
FAN27G1994 Fragaria x ananassa HOM05D001879 ORTHO05D007957 2.4e-248 862.8 933 55.2
GSVIVG01009355001 Vitis vinifera HOM05D001879 ORTHO05D007957 2.1e-247 859.8 876 56.3
Ca_15906_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007957 3.5e-247 859.0 915 54.3
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 3.5e-247 859.0 884 55.5
FAN20G0243 Fragaria x ananassa HOM05D001879 ORTHO05D007957 3.5e-247 859.0 936 55.2
Manes.05G181300 Manihot esculenta HOM05D001879 ORTHO05D007957 3.5e-247 859.0 933 54.3
FAN24G3463 Fragaria x ananassa HOM05D001879 ORTHO05D007957 1.9e-245 853.2 971 53.7
Lalb_Chr11g0062861 Lupinus albus HOM05D001879 ORTHO05D007957 2.5e-245 852.8 915 54.0
Lj1g0023876 Lotus japonicus HOM05D001879 ORTHO05D007957 1.6e-244 850.1 909 54.1
Nitab4.5_0003803g0010 Nicotiana tabacum HOM05D001879 ORTHO05D007957 2.8e-244 849.4 922 55.2
Psat0s3943g0040 Pisum sativum HOM05D001879 ORTHO05D007957 3.6e-244 849.0 915 54.2
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 4.7e-244 848.6 933 54.9
arahy.Tifrunner.gnm1.ann1.0Z12M9 Arachis hypogaea HOM05D001879 ORTHO05D007957 9.9e-242 840.9 923 53.3
Prupe.1G423800 Prunus persica HOM05D001879 ORTHO05D007957 1.1e-240 837.4 919 55.0
Glyma.06G045600 Glycine max HOM05D001879 ORTHO05D007957 7.1e-240 834.7 907 53.8
Nitab4.5_0000164g0140 Nicotiana tabacum HOM05D001879 ORTHO05D007957 7.1e-240 834.7 919 54.2
arahy.Tifrunner.gnm1.ann1.D4I9HU Arachis hypogaea HOM05D001879 ORTHO05D007957 1.2e-239 833.9 919 53.3
Cpa.g.sc142.17 Carica papaya HOM05D001879 ORTHO05D007957 3.0e-238 829.3 925 54.2
Medtr3g103040 Medicago truncatula HOM05D001879 ORTHO05D007957 9.6e-237 824.3 922 53.0
Actinidia38101 Actinidia chinensis HOM05D001879 ORTHO05D007957 1.2e-236 823.9 909 52.9
Sabra14G0010700 Salix brachista HOM05D001879 ORTHO05D007957 8.1e-236 821.2 943 52.6
Lj4A759G42 Lonicera japonica HOM05D001879 ORTHO05D007957 1.1e-235 820.8 916 54.3
Cc10_g05700 Coffea canephora HOM05D001879 ORTHO05D007957 4.0e-235 818.9 924 52.4
Eucgr.F02257 Eucalyptus grandis HOM05D001879 ORTHO05D007957 2.9e-233 812.8 931 53.2
Sopen04g031530 Solanum pennellii HOM05D001879 ORTHO05D007957 2.9e-233 812.8 949 51.6
CAN.G724.12 Capsicum annuum HOM05D001879 ORTHO05D007957 8.4e-233 811.2 924 52.3
Solyc04g077930.4 Solanum lycopersicum HOM05D001879 ORTHO05D007957 2.4e-232 809.7 949 51.4
Hund05306 Selenicereus undatus HOM05D001879 ORTHO05D007957 8.7e-230 801.2 962 50.8
THA.LOC104812592 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 1.2e-226 790.8 923 51.4
THA.LOC104820515 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 1.5e-226 790.4 907 52.6
Actinidia08249 Actinidia chinensis HOM05D001879 ORTHO05D007957 2.0e-226 790.0 834 55.9
SalBow6G3417 Salvia bowleyana HOM05D001879 ORTHO05D007957 2.0e-226 790.0 928 51.8
Migut.N02775 Erythranthe guttata HOM05D001879 ORTHO05D007957 2.9e-225 786.2 913 50.5
TPR.G33684 Trifolium pratense HOM05D001879 ORTHO05D007957 2.4e-224 783.1 963 49.7
Aqoxy6G02668 Aquilegia oxysepala HOM05D001879 ORTHO05D007957 5.4e-224 781.9 860 51.6
vmacro22058 Vaccinium macrocarpon HOM05D001879 ORTHO05D007957 5.4e-224 781.9 963 50.3
Nn1g04585 Nelumbo nucifera HOM05D001879 ORTHO05D007957 6.0e-223 778.5 918 51.7
Sp1g23990 Schrenkiella parvula HOM05D001879 ORTHO05D007957 5.1e-222 775.4 843 53.3
Aa31sc113G40 Aethionema arabicum HOM05D001879 ORTHO05D007957 1.1e-221 774.2 857 52.7
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 2.5e-221 773.1 821 54.7
Oeu057374.1 Olea europaea HOM05D001879 ORTHO05D007957 2.5e-221 773.1 917 51.4
Thhalv10006764m.g Eutrema salsugineum HOM05D001879 ORTHO05D007957 5.6e-221 771.9 909 50.6
AT1G27752 Arabidopsis thaliana HOM05D001879 ORTHO05D007957 5.3e-219 765.4 924 50.6
AL1G41290 Arabidopsis lyrata HOM05D001879 ORTHO05D007957 1.2e-218 764.2 927 50.2
EL10Ac1g02390 Beta vulgaris HOM05D001879 ORTHO05D007957 1.2e-215 754.2 917 48.5
PSO675G4263 Papaver somniferum HOM05D001879 ORTHO05D007957 1.6e-215 753.8 855 52.4
HanXRQChr01g0027941 Helianthus annuus HOM05D001879 ORTHO05D007957 2.1e-215 753.4 940 48.6
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 3.5e-215 752.7 932 48.2
Carub.0001s2627 Capsella rubella HOM05D001879 ORTHO05D007957 3.5e-215 752.7 837 53.2
AUR62037429 Chenopodium quinoa HOM05D001879 ORTHO05D007957 3.5e-215 752.7 845 51.7
AUR62038791 Chenopodium quinoa HOM05D001879 ORTHO05D007957 8.7e-214 748.0 920 49.8
SGA_v2.0_scaffold152G36803 Striga asiatica HOM05D001879 ORTHO05D007957 8.7e-214 748.0 832 52.9
BolC3t19706H Brassica oleracea HOM05D001879 ORTHO05D007957 5.6e-213 745.3 841 51.6
Sc26g0004180 Simmondsia chinensis HOM05D001879 ORTHO05D007957 7.4e-213 745.0 911 50.7
A08p26070 Brassica napus HOM05D001879 ORTHO05D007957 1.3e-212 744.2 819 53.0
BraA08t34557Z Brassica rapa HOM05D001879 ORTHO05D007957 1.1e-211 741.1 816 52.6
PSO541G1802 Papaver somniferum HOM05D001879 ORTHO05D007957 1.1e-211 741.1 855 51.3
C03p74580 Brassica napus HOM05D001879 ORTHO05D007957 1.8e-211 740.3 916 49.5
SalBow8G5177 Salvia bowleyana HOM05D001879 ORTHO05D007957 6.5e-201 705.3 911 48.4
Thecc.08G089900 Theobroma cacao HOM05D001879 ORTHO05D007957 3.9e-198 696.0 679 59.1
BcaC01g01572 Brassica carinata HOM05D001879 ORTHO05D007957 8.8e-198 694.9 841 49.5
ECA246G2822 Erigeron canadensis HOM05D001879 ORTHO05D007957 9.7e-189 664.8 797 49.3
ATR0208G030 Amborella trichopoda HOM05D001879 ORTHO05D007957 1.4e-187 661.0 969 44.7
CDE02G0795 Ceratophyllum demersum HOM05D001879 ORTHO05D007957 1.9e-184 650.6 818 48.0
unitig_578.g16146 Utricularia gibba HOM05D001879 ORTHO05D007957 8.5e-177 625.2 814 47.7
Os03g0205000 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007957 3.3e-173 613.2 912 43.9
PGSC0003DMG400021524 Solanum tuberosum HOM05D001879 ORTHO05D007957 3.3e-173 613.2 670 53.6
Zm00001eb007600 Zea mays HOM05D001879 ORTHO05D007957 3.8e-169 599.7 858 45.7
HPP92_009537 Vanilla planifolia HOM05D001879 ORTHO05D007957 2.9e-161 573.5 766 45.3
CARHR027270 Cardamine hirsuta HOM05D001879 ORTHO05D007957 1.8e-158 564.3 574 53.8
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 1.1e-155 555.1 550 56.2
TAR381G0637 Trochodendron aralioides HOM05D001879 ORTHO05D007957 7.5e-149 532.3 504 56.9
Lsat_1_v5_gn_6_112340 Lactuca sativa HOM05D001879 ORTHO05D007957 2.2e-148 530.8 910 39.7
Haze_22326 Corylus avellana HOM05D001879 ORTHO05D007957 3.9e-145 520.0 550 55.1
DCAR_009884 Daucus carota HOM05D001879 ORTHO05D007957 1.1e-139 501.9 924 39.6
CSS0023334 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 2.0e-133 481.1 437 57.4
Peaxi162Scf00081g00176 Petunia axillaris HOM05D001879 ORTHO05D007957 2.2e-132 477.6 577 49.4
MD03G1160700 Malus domestica HOM05D001879 ORTHO05D007957 5.6e-120 436.4 438 56.2
Mapoly0067s0042 Marchantia polymorpha HOM05D001879 ORTHO05D007957 6.9e-102 376.3 751 36.0
TAR381G1515 Trochodendron aralioides HOM05D001879 ORTHO05D007957 9.0e-86 322.8 373 53.4
CANSAT25G3038 Cannabis sativa HOM05D001879 ORTHO05D007957 7.7e-85 319.7 251 66.9
SHI08396 Sapria himalayana HOM05D001879 ORTHO05D007957 7.9e-82 309.7 552 39.7
Pp3c2_23190 Physcomitrium patens HOM05D001879 ORTHO05D007957 3.0e-81 307.8 1032 29.1
SMO347G0602 Selaginella moellendorffii HOM05D001879 ORTHO05D007957 2.8e-79 301.2 822 30.7
Haze_22325 Corylus avellana HOM05D001879 ORTHO05D007957 2.5e-75 288.1 219 74.4
AagrBONN_evm.TU.Sc2ySwM_362.2893 Anthoceros agrestis HOM05D001879 ORTHO05D007957 7.9e-74 283.1 704 30.8
CBR_g57086 Chara braunii HOM05D001879 ORTHO05D007957 1.2e-61 242.7 1130 25.8
SEGI_28261 Sequoiadendron giganteum HOM05D001879 ORTHO05D007957 2.7e-53 214.9 305 44.3
BraA09t40950Z Brassica rapa HOM05D001879 ORTHO05D007957 3.6e-50 204.5 150 70.7
Atru.chr13.821 Acer truncatum HOM05D001879 ORTHO05D007957 8.0e-50 203.4 248 54.0
CSS0041216 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 1.5e-35 156.0 197 49.7
SHI08398 Sapria himalayana HOM05D001879 ORTHO05D007957 2.1e-34 152.1 219 45.7
Cfa000625 Carpinus fangiana HOM05D001879 ORTHO05D007957 7.8e-29 133.7 141 61.0
HanXRQChr05g0145561 Helianthus annuus HOM05D001879 ORTHO05D007957 9.8e-24 116.7 66 77.3
Cfa010565 Carpinus fangiana HOM05D001879 ORTHO05D007957 1.4e-17 96.3 83 63.9
SHI08400 Sapria himalayana HOM05D001879 ORTHO05D007957 8.9e-17 93.6 100 58.0
HPP92_009536 Vanilla planifolia HOM05D001879 ORTHO05D007957 3.3e-11 75.1 128 37.5
AagrBONN_evm.TU.Sc2ySwM_368.1487 Anthoceros agrestis HOM05D001879 ORTHO05D007957 1.2e-10 73.2 167 34.1
C05p26450 Brassica napus HOM05D001879 ORTHO05D007957 2.8e-10 72.0 45 77.8
BolC5t31366H Brassica oleracea HOM05D001879 ORTHO05D007957 2.8e-10 72.0 45 77.8
MCO02G333 Micromonas commoda HOM05D001879 ORTHO05D007957 1.8e-09 69.3 845 23.2
Cre13.g568750 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007957 3.4e-08 65.1 69 46.4


User provided reference genes

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