Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G016570 Citrullus lanatus HOM05D006351 ORTHO05D007796 0.0e+00 1295.0 658 100.0
CsaV3_4G036840 Cucumis sativus L. HOM05D006351 ORTHO05D007796 9.0e-295 1016.5 660 81.1
MELO3C016986.2 Cucumis melo HOM05D006351 ORTHO05D007796 3.7e-208 728.8 522 75.5
QL02p020121 Quercus lobata HOM05D006351 ORTHO05D007796 2.3e-197 693.0 679 55.1
Sed0014901 Sechium edule HOM05D006351 ORTHO05D007796 5.1e-181 638.6 479 71.6
Thecc.09G019400 Theobroma cacao HOM05D006351 ORTHO05D007796 1.9e-180 636.7 658 53.8
GSVIVG01035918001 Vitis vinifera HOM05D006351 ORTHO05D007796 2.5e-180 636.3 653 53.1
Haze_21455 Corylus avellana HOM05D006351 ORTHO05D007796 1.3e-179 634.0 646 53.1
CiPaw.08G008200 Carya illinoinensis HOM05D006351 ORTHO05D007796 1.6e-179 633.6 657 51.9
Dinv03414 Davidia involucrata HOM05D006351 ORTHO05D007796 4.9e-176 622.1 672 50.6
TAR625G1335 Trochodendron aralioides HOM05D006351 ORTHO05D007796 1.4e-175 620.5 668 51.3
Duzib150G0289 Durio zibethinus HOM05D006351 ORTHO05D007796 1.5e-172 610.5 657 51.8
Prupe.1G486500 Prunus persica HOM05D006351 ORTHO05D007796 9.6e-172 607.8 636 51.3
Sabra06G0202800 Salix brachista HOM05D006351 ORTHO05D007796 1.3e-171 607.4 649 50.2
Potri.006G259600 Populus trichocarpa HOM05D006351 ORTHO05D007796 8.2e-171 604.7 643 50.1
Cfa013099 Carpinus fangiana HOM05D006351 ORTHO05D007796 2.4e-170 603.2 656 50.9
Atru.chr7.2503_Atru.chr7.2504 Acer truncatum HOM05D006351 ORTHO05D007796 4.1e-170 602.4 653 49.8
MD15G1131200 Malus domestica HOM05D006351 ORTHO05D007796 1.0e-168 597.8 635 51.2
Manes.03G011600 Manihot esculenta HOM05D006351 ORTHO05D007796 1.3e-168 597.4 642 50.3
TWI34G1294 Tripterygium wilfordii HOM05D006351 ORTHO05D007796 2.2e-168 596.7 645 51.0
Medtr4g014840 Medicago truncatula HOM05D006351 ORTHO05D007796 1.1e-167 594.3 641 50.2
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 9.3e-167 591.3 626 50.5
Psat6g028600 Pisum sativum HOM05D006351 ORTHO05D007796 1.8e-165 587.0 642 50.0
CANSAT54G0019 Cannabis sativa HOM05D006351 ORTHO05D007796 5.1e-165 585.5 640 48.4
Actinidia22310 Actinidia chinensis HOM05D006351 ORTHO05D007796 1.3e-163 580.9 657 49.2
arahy.Tifrunner.gnm1.ann1.DQM65W Arachis hypogaea HOM05D006351 ORTHO05D007796 4.8e-163 578.9 638 48.4
Sc06g0000450 Simmondsia chinensis HOM05D006351 ORTHO05D007796 1.8e-162 577.0 648 49.8
arahy.Tifrunner.gnm1.ann1.52204A Arachis hypogaea HOM05D006351 ORTHO05D007796 5.3e-162 575.5 638 48.1
Ciclev10007789m.g Citrus clementina HOM05D006351 ORTHO05D007796 6.9e-162 575.1 650 47.7
TPR.G32564 Trifolium pratense HOM05D006351 ORTHO05D007796 2.0e-161 573.5 642 49.5
arahy.Tifrunner.gnm1.ann1.5RBZ70 Arachis hypogaea HOM05D006351 ORTHO05D007796 3.4e-161 572.8 638 48.0
Lalb_Chr22g0361451 Lupinus albus HOM05D006351 ORTHO05D007796 3.4e-161 572.8 638 49.2
VMungo0647G0679 Vigna mungo HOM05D006351 ORTHO05D007796 4.5e-161 572.4 640 48.4
vmacro11222 Vaccinium macrocarpon HOM05D006351 ORTHO05D007796 9.4e-159 564.7 651 48.2
Nn8g39723 Nelumbo nucifera HOM05D006351 ORTHO05D007796 3.6e-158 562.8 665 46.8
Phvul.001G047200 Phaseolus vulgaris HOM05D006351 ORTHO05D007796 7.9e-158 561.6 642 47.4
Gohir.A07G030500 Gossypium hirsutum HOM05D006351 ORTHO05D007796 6.9e-154 548.5 648 48.6
Peaxi162Scf00116g00510 Petunia axillaris HOM05D006351 ORTHO05D007796 6.9e-154 548.5 661 46.9
FvH4_2g28280 Fragaria vesca HOM05D006351 ORTHO05D007796 9.1e-154 548.1 601 51.4
Lj8A733T33 Lonicera japonica HOM05D006351 ORTHO05D007796 7.7e-153 545.0 707 46.3
Lj5g0002049 Lotus japonicus HOM05D006351 ORTHO05D007796 7.7e-153 545.0 640 47.2
CSS0041020 Camellia sinensis var. sinensis HOM05D006351 ORTHO05D007796 1.0e-152 544.7 665 46.3
Oeu028190.1 Olea europaea HOM05D006351 ORTHO05D007796 1.0e-152 544.7 624 49.2
Gohir.D07G034400 Gossypium hirsutum HOM05D006351 ORTHO05D007796 2.9e-152 543.1 648 48.8
RcHm_v2.0_Chr6g0297191 Rosa chinensis HOM05D006351 ORTHO05D007796 3.8e-152 542.7 634 50.8
MBI14_g15653_MAGBIO Magnolia biondii HOM05D006351 ORTHO05D007796 1.5e-148 530.8 652 46.5
arahy.Tifrunner.gnm1.ann1.7H8NL8 Arachis hypogaea HOM05D006351 ORTHO05D007796 2.6e-148 530.0 643 46.7
Sopen01g038480 Solanum pennellii HOM05D006351 ORTHO05D007796 7.4e-148 528.5 638 45.8
Solyc01g094670.4 Solanum lycopersicum HOM05D006351 ORTHO05D007796 3.7e-147 526.2 638 45.5
AUR62031572 Chenopodium quinoa HOM05D006351 ORTHO05D007796 4.8e-147 525.8 639 45.2
Eucgr.C01685 Eucalyptus grandis HOM05D006351 ORTHO05D007796 4.8e-147 525.8 640 47.5
Hund03479 Selenicereus undatus HOM05D006351 ORTHO05D007796 1.8e-146 523.9 709 43.7
Glyma.17G215800 Glycine max HOM05D006351 ORTHO05D007796 3.1e-146 523.1 639 47.1
PGR119G2225 Punica granatum HOM05D006351 ORTHO05D007796 5.3e-146 522.3 649 46.7
EL10Ac2g04151 Beta vulgaris HOM05D006351 ORTHO05D007796 2.0e-145 520.4 719 42.7
SalBow3G2878 Salvia bowleyana HOM05D006351 ORTHO05D007796 1.5e-143 514.2 635 46.3
MSTRG.9683 Avicennia marina HOM05D006351 ORTHO05D007796 1.9e-143 513.8 638 45.1
COL.COLO4_18917 Corchorus olitorius HOM05D006351 ORTHO05D007796 3.3e-140 503.1 654 46.0
DCAR_018801 Daucus carota HOM05D006351 ORTHO05D007796 7.0e-138 495.4 651 43.6
HanXRQChr16g0511151 Helianthus annuus HOM05D006351 ORTHO05D007796 1.5e-132 477.6 643 42.5
Lsat_1_v5_gn_6_115401 Lactuca sativa HOM05D006351 ORTHO05D007796 4.4e-132 476.1 651 45.0
ECA246G3333 Erigeron canadensis HOM05D006351 ORTHO05D007796 9.8e-132 474.9 617 45.5
THA.LOC104815006 Tarenaya hassleriana HOM05D006351 ORTHO05D007796 3.7e-131 473.0 644 44.9
Aqoxy7G03341 Aquilegia oxysepala HOM05D006351 ORTHO05D007796 9.1e-130 468.4 656 42.5
Thhalv10013026m.g Eutrema salsugineum HOM05D006351 ORTHO05D007796 1.2e-129 468.0 645 44.5
Carub.0006s0954 Capsella rubella HOM05D006351 ORTHO05D007796 5.9e-129 465.7 648 43.5
AL6G21650 Arabidopsis lyrata HOM05D006351 ORTHO05D007796 8.5e-128 461.8 648 43.7
Cc08_g00180 Coffea canephora HOM05D006351 ORTHO05D007796 4.2e-127 459.5 624 44.6
Gorai.001G036000 Gossypium raimondii HOM05D006351 ORTHO05D007796 4.7e-126 456.1 579 46.6
Migut.G00796 Erythranthe guttata HOM05D006351 ORTHO05D007796 1.0e-125 454.9 651 42.4
AUR62012449 Chenopodium quinoa HOM05D006351 ORTHO05D007796 2.3e-125 453.8 588 44.2
ATR0629G052 Amborella trichopoda HOM05D006351 ORTHO05D007796 3.0e-125 453.4 655 41.5
AT5G11030 Arabidopsis thaliana HOM05D006351 ORTHO05D007796 5.2e-125 452.6 649 43.6
Sp6g32460 Schrenkiella parvula HOM05D006351 ORTHO05D007796 8.0e-118 428.7 666 39.8
FAN20G2359 Fragaria x ananassa HOM05D006351 ORTHO05D007796 6.8e-117 425.6 373 59.5
BcaC04g19265 Brassica carinata HOM05D006351 ORTHO05D007796 2.6e-116 423.7 655 39.4
A10p26650 Brassica napus HOM05D006351 ORTHO05D007796 1.3e-115 421.4 653 39.5
FAN24G1918 Fragaria x ananassa HOM05D006351 ORTHO05D007796 2.2e-115 420.6 374 59.4
SGA_v2.0_scaffold12G06223 Striga asiatica HOM05D006351 ORTHO05D007796 1.4e-114 417.9 694 38.5
C09p65820 Brassica napus HOM05D006351 ORTHO05D007796 1.8e-114 417.5 653 39.8
HPP92_020077 Vanilla planifolia HOM05D006351 ORTHO05D007796 1.8e-114 417.5 647 39.1
FAN15G0846 Fragaria x ananassa HOM05D006351 ORTHO05D007796 4.6e-113 412.9 373 59.2
Aa31LG3G16100 Aethionema arabicum HOM05D006351 ORTHO05D007796 1.0e-112 411.8 646 41.2
BraA10t44723Z Brassica rapa HOM05D006351 ORTHO05D007796 1.3e-112 411.4 654 38.8
BolC9t59403H Brassica oleracea HOM05D006351 ORTHO05D007796 3.4e-108 396.7 651 38.6
CARHR202260 Cardamine hirsuta HOM05D006351 ORTHO05D007796 3.9e-104 383.3 540 43.7
Os08g0290100 Oryza sativa ssp. japonica HOM05D006351 ORTHO05D007796 1.9e-103 380.9 648 38.0
FAN27G0329 Fragaria x ananassa HOM05D006351 ORTHO05D007796 1.2e-102 378.3 373 55.0
Cpa.g.sc187.30 Carica papaya HOM05D006351 ORTHO05D007796 1.1e-101 375.2 550 42.0
Nitab4.5_0002992g0070 Nicotiana tabacum HOM05D006351 ORTHO05D007796 1.5e-100 371.3 696 36.2
Hma1.2p1_0043F.1_g025900 Hydrangea macrophylla HOM05D006351 ORTHO05D007796 2.6e-100 370.5 480 43.8
PSO782G3777 Papaver somniferum HOM05D006351 ORTHO05D007796 7.5e-100 369.0 591 39.3
unitig_0.g2412 Utricularia gibba HOM05D006351 ORTHO05D007796 1.5e-95 354.8 626 36.3
Medtr1g013030 Medicago truncatula HOM05D006351 ORTHO05D007796 1.8e-93 347.8 321 56.7
Hma1.2p1_0043F.1_g025890 Hydrangea macrophylla HOM05D006351 ORTHO05D007796 5.8e-92 342.8 453 43.5
Nitab4.5_0000389g0140 Nicotiana tabacum HOM05D006351 ORTHO05D007796 5.8e-92 342.8 680 36.0
arahy.Tifrunner.gnm1.ann1.XZMU6N Arachis hypogaea HOM05D006351 ORTHO05D007796 3.5e-89 333.6 608 35.7
Ah.10g035670 Amaranthus hybridus HOM05D006351 ORTHO05D007796 5.1e-80 303.1 646 34.2
Zm00001eb028280 Zea mays HOM05D006351 ORTHO05D007796 1.1e-74 285.4 451 37.0
Cc11_g00420 Coffea canephora HOM05D006351 ORTHO05D007796 2.0e-68 264.6 269 52.0
CAN.G142.3 Capsicum annuum HOM05D006351 ORTHO05D007796 2.1e-62 244.6 301 44.2
arahy.Tifrunner.gnm1.ann1.C8TN8W Arachis hypogaea HOM05D006351 ORTHO05D007796 2.6e-60 237.7 547 31.6
Pp3c8_15630 Physcomitrium patens HOM05D006351 ORTHO05D007796 3.7e-46 190.7 435 31.0
SEGI_10292 Sequoiadendron giganteum HOM05D006351 ORTHO05D000001 5.1e-40 170.2 290 39.3
Mapoly0027s0143 Marchantia polymorpha HOM05D006351 ORTHO05D007796 1.4e-34 152.1 586 25.8
Pp3c20_13310 Physcomitrium patens HOM05D006351 ORTHO05D007796 2.5e-34 151.4 556 26.3
AagrBONN_evm.TU.Sc2ySwM_368.1425 Anthoceros agrestis HOM05D006351 ORTHO05D007796 2.7e-33 147.9 668 24.4
SMO200G0034 Selaginella moellendorffii HOM05D006351 ORTHO05D007796 1.0e-32 146.0 564 25.9
FAN07G1533 Fragaria x ananassa HOM05D006351 ORTHO05D007796 9.1e-29 132.9 87 74.7
CANSAT25G0983 Cannabis sativa HOM05D006351 ORTHO05D007796 3.5e-28 131.0 214 37.9
CDE02G0453 Ceratophyllum demersum HOM05D006351 ORTHO05D007796 2.1e-25 121.7 332 28.3
MBI14_g30358_MAGBIO Magnolia biondii HOM05D006351 ORTHO05D007796 1.4e-24 119.0 134 49.3
CAN.G142.4 Capsicum annuum HOM05D006351 ORTHO05D007796 8.2e-22 109.8 147 44.2
MELO3C031505.2 Cucumis melo HOM05D006351 ORTHO05D007796 4.7e-17 94.0 89 58.4
CAN.G142.2 Capsicum annuum HOM05D006351 ORTHO05D007796 8.0e-17 93.2 96 51.0
Medtr1g012280 Medicago truncatula HOM05D006351 ORTHO05D007796 8.8e-16 89.7 141 38.3
Medtr1g012260 Medicago truncatula HOM05D006351 ORTHO05D007796 1.8e-13 82.0 82 54.9
Gohir.A11G232166 Gossypium hirsutum HOM05D006351 ORTHO05D007796 4.0e-08 64.3 63 50.8
CBR_g18678 Chara braunii HOM05D006351 ORTHO05D007796 6.8e-08 63.5 257 25.3
Gohir.A04G102300 Gossypium hirsutum HOM05D001271 ORTHO05D007796 1.3e-06 59.3 62 48.4
Gohir.A01G131311 Gossypium hirsutum HOM05D006351 ORTHO05D007796 2.2e-06 58.5 67 47.8
Gohir.A13G118000 Gossypium hirsutum HOM05D006351 ORTHO05D007796 3.7e-06 57.8 63 47.6


User provided reference genes

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