Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G013480 Citrullus lanatus HOM05D005629 ORTHO05D008000 8.3e-188 660.2 335 100.0
CsaV3_3G027030 Cucumis sativus L. HOM05D005629 ORTHO05D008000 8.4e-172 607.1 335 91.9
Sed0004120 Sechium edule HOM05D005629 ORTHO05D008000 2.5e-160 568.9 336 88.1
Hma1.2p1_1278F.1_g272330 Hydrangea macrophylla HOM05D005629 ORTHO05D008000 2.5e-144 515.8 331 77.9
Cfa007230 Carpinus fangiana HOM05D005629 ORTHO05D008000 3.3e-144 515.4 333 77.8
Dinv33339 Davidia involucrata HOM05D005629 ORTHO05D008000 5.7e-144 514.6 336 78.6
Prupe.3G305800 Prunus persica HOM05D005629 ORTHO05D008000 9.6e-144 513.8 329 78.7
Haze_14872 Corylus avellana HOM05D005629 ORTHO05D008000 2.1e-143 512.7 325 79.4
CiPaw.03G055300 Carya illinoinensis HOM05D005629 ORTHO05D008000 2.8e-143 512.3 339 76.1
QL02p071469 Quercus lobata HOM05D005629 ORTHO05D008000 8.2e-143 510.8 336 76.5
GSVIVG01033097001 Vitis vinifera HOM05D005629 ORTHO05D008000 1.4e-142 510.0 332 76.8
RcHm_v2.0_Chr2g0175511 Rosa chinensis HOM05D005629 ORTHO05D008000 3.1e-142 508.8 329 77.5
FAN09G2642 Fragaria x ananassa HOM05D005629 ORTHO05D008000 4.5e-141 505.0 333 76.6
COL.COLO4_17207 Corchorus olitorius HOM05D005629 ORTHO05D008000 1.3e-140 503.4 337 75.4
FvH4_6g53470 Fragaria vesca HOM05D005629 ORTHO05D008000 2.2e-140 502.7 332 77.4
MD09G1011200 Malus domestica HOM05D005629 ORTHO05D008000 6.5e-140 501.1 325 76.9
Nitab4.5_0005161g0130 Nicotiana tabacum HOM05D005629 ORTHO05D008000 6.5e-140 501.1 328 76.8
Actinidia36200 Actinidia chinensis HOM05D005629 ORTHO05D008000 8.5e-140 500.7 336 77.1
Eucgr.I01649 Eucalyptus grandis HOM05D005629 ORTHO05D008000 1.4e-139 500.0 337 75.4
CANSAT64G1539 Cannabis sativa HOM05D005629 ORTHO05D008000 1.9e-139 499.6 317 79.8
Nitab4.5_0000559g0400 Nicotiana tabacum HOM05D005629 ORTHO05D008000 5.5e-139 498.0 290 83.1
Thecc.04G035600 Theobroma cacao HOM05D005629 ORTHO05D008000 9.3e-139 497.3 343 74.6
arahy.Tifrunner.gnm1.ann1.26H0NE Arachis hypogaea HOM05D005629 ORTHO05D008000 2.7e-138 495.7 333 74.8
Atru.chr6.2566 Acer truncatum HOM05D005629 ORTHO05D008000 3.6e-138 495.4 335 75.8
Ciclev10015840m.g Citrus clementina HOM05D005629 ORTHO05D008000 3.6e-138 495.4 313 79.6
Cpa.g.sc171.18 Carica papaya HOM05D005629 ORTHO05D008000 1.3e-137 493.4 341 75.1
Gohir.D07G235300 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.3e-137 493.4 342 74.9
PGSC0003DMG400013378 Solanum tuberosum HOM05D005629 ORTHO05D008000 1.8e-137 493.0 288 81.6
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 2.3e-137 492.7 292 84.2
Gohir.A07G228100 Gossypium hirsutum HOM05D005629 ORTHO05D008000 2.3e-137 492.7 343 75.5
Sc03g0006560 Simmondsia chinensis HOM05D005629 ORTHO05D008000 6.7e-137 491.1 297 79.8
Gorai.001G271100 Gossypium raimondii HOM05D005629 ORTHO05D008000 1.5e-136 490.0 343 74.9
SalBow4G2288 Salvia bowleyana HOM05D005629 ORTHO05D008000 1.5e-136 490.0 307 80.5
ECA246G2396 Erigeron canadensis HOM05D005629 ORTHO05D008000 1.9e-136 489.6 332 75.3
Oeu058781.1 Olea europaea HOM05D005629 ORTHO05D008000 1.9e-136 489.6 330 75.8
Solyc03g005000.4 Solanum lycopersicum HOM05D005629 ORTHO05D008000 1.9e-136 489.6 285 81.8
Sopen03g001010 Solanum pennellii HOM05D005629 ORTHO05D008000 1.9e-136 489.6 285 81.8
Gohir.A11G064500 Gossypium hirsutum HOM05D005629 ORTHO05D008000 2.5e-136 489.2 338 74.0
BcaC06g33860 Brassica carinata HOM05D005629 ORTHO05D008000 3.3e-136 488.8 302 79.1
BcaC06g31019 Brassica carinata HOM05D005629 ORTHO05D008000 4.3e-136 488.4 302 79.1
BcaC06g33857 Brassica carinata HOM05D005629 ORTHO05D008000 4.3e-136 488.4 302 79.1
A06p41480 Brassica napus HOM05D005629 ORTHO05D008000 4.3e-136 488.4 302 79.1
BraA06t27073Z Brassica rapa HOM05D005629 ORTHO05D008000 4.3e-136 488.4 302 79.1
Gohir.D11G068800 Gossypium hirsutum HOM05D005629 ORTHO05D008000 4.3e-136 488.4 338 73.7
PGR142G0641 Punica granatum HOM05D005629 ORTHO05D008000 4.3e-136 488.4 343 73.5
C07p36170 Brassica napus HOM05D005629 ORTHO05D008000 5.7e-136 488.0 302 79.1
CAN.G1751.5 Capsicum annuum HOM05D005629 ORTHO05D008000 7.4e-136 487.6 319 76.2
BolC7t44133H Brassica oleracea HOM05D005629 ORTHO05D008000 9.7e-136 487.3 302 78.8
Actinidia05920 Actinidia chinensis HOM05D005629 ORTHO05D008000 1.3e-135 486.9 315 78.4
AL5G16240 Arabidopsis lyrata HOM05D005629 ORTHO05D008000 2.8e-135 485.7 340 72.4
Peaxi162Scf00700g00023 Petunia axillaris HOM05D005629 ORTHO05D008000 4.8e-135 485.0 349 69.9
Potri.001G330800 Populus trichocarpa HOM05D005629 ORTHO05D008000 4.8e-135 485.0 342 74.3
Ca_26782_v3 Cicer arietinum L. HOM05D005629 ORTHO05D008000 8.2e-135 484.2 332 74.7
Phvul.001G094100 Phaseolus vulgaris HOM05D005629 ORTHO05D008000 8.2e-135 484.2 334 74.6
Glyma.16G056900 Glycine max HOM05D005629 ORTHO05D008000 1.1e-134 483.8 330 75.5
Lju41A52T99 Lonicera japonica HOM05D005629 ORTHO05D008000 1.1e-134 483.8 306 79.4
TWI56G1125 Tripterygium wilfordii HOM05D005629 ORTHO05D008000 1.1e-134 483.8 335 73.1
EL10Ac6g15359 Beta vulgaris HOM05D005629 ORTHO05D008000 1.4e-134 483.4 340 71.8
Gorai.007G073600 Gossypium raimondii HOM05D005629 ORTHO05D008000 1.4e-134 483.4 339 73.2
Lj1g0025061 Lotus japonicus HOM05D005629 ORTHO05D008000 1.4e-134 483.4 329 76.3
Lalb_Chr14g0363391 Lupinus albus HOM05D005629 ORTHO05D008000 1.4e-134 483.4 333 74.2
Cc07_g00800 Coffea canephora HOM05D005629 ORTHO05D008000 1.8e-134 483.0 344 73.0
Migut.F00066 Erythranthe guttata HOM05D005629 ORTHO05D008000 4.1e-134 481.9 326 74.8
HanXRQChr17g0550111 Helianthus annuus HOM05D005629 ORTHO05D008000 4.1e-134 481.9 278 83.8
THA.LOC104825621 Tarenaya hassleriana HOM05D005629 ORTHO05D008000 4.1e-134 481.9 304 78.0
Sp2g16240 Schrenkiella parvula HOM05D005629 ORTHO05D008000 5.3e-134 481.5 306 77.1
Aqoxy3G01541 Aquilegia oxysepala HOM05D005629 ORTHO05D008000 6.9e-134 481.1 338 73.4
Psat3g164800 Pisum sativum HOM05D005629 ORTHO05D008000 6.9e-134 481.1 279 84.9
Sabra16G0211800 Salix brachista HOM05D005629 ORTHO05D008000 1.2e-133 480.3 306 80.4
Ah.02g120470 Amaranthus hybridus HOM05D005629 ORTHO05D008000 1.5e-133 479.9 335 72.2
AT3G27110 Arabidopsis thaliana HOM05D005629 ORTHO05D008000 2.6e-133 479.2 340 71.8
Carub.0005s0536 Capsella rubella HOM05D005629 ORTHO05D008000 3.4e-133 478.8 299 78.3
DCAR_011309 Daucus carota HOM05D005629 ORTHO05D008000 3.4e-133 478.8 333 73.0
TPR.G38340 Trifolium pratense HOM05D005629 ORTHO05D008000 4.5e-133 478.4 328 75.0
Medtr7g033405 Medicago truncatula HOM05D005629 ORTHO05D008000 5.9e-133 478.0 340 73.2
Thhalv10004520m.g Eutrema salsugineum HOM05D005629 ORTHO05D008000 1.0e-132 477.2 296 79.4
VMungo1383G2395 Vigna mungo HOM05D005629 ORTHO05D008000 1.0e-132 477.2 340 73.2
Aa31LG2G5490 Aethionema arabicum HOM05D005629 ORTHO05D008000 2.2e-132 476.1 293 78.8
PSO017G3506 Papaver somniferum HOM05D005629 ORTHO05D008000 3.8e-132 475.3 277 83.0
SGA_v2.0_scaffold253G45198 Striga asiatica HOM05D005629 ORTHO05D008000 5.0e-132 474.9 281 84.0
unitig_52.g17654 Utricularia gibba HOM05D005629 ORTHO05D008000 6.1e-130 468.0 271 84.5
ATR0561G239 Amborella trichopoda HOM05D005629 ORTHO05D008000 1.5e-128 463.4 275 82.2
Os01g0970700 Oryza sativa ssp. japonica HOM05D005629 ORTHO05D008000 3.1e-126 455.7 270 81.5
Rhsim10G0006600 Rhododendron simsii HOM05D005629 ORTHO05D008000 4.1e-126 455.3 280 81.8
Zm00001eb127160 Zea mays HOM05D005629 ORTHO05D008000 1.2e-125 453.8 278 78.8
Duzib264G0865 Durio zibethinus HOM05D005629 ORTHO05D008000 2.0e-125 453.0 344 70.6
SEGI_10761 Sequoiadendron giganteum HOM05D005629 ORTHO05D008000 1.7e-124 449.9 272 80.1
Mapoly0033s0112 Marchantia polymorpha HOM05D005629 ORTHO05D008000 2.5e-123 446.0 284 75.4
HPP92_024304 Vanilla planifolia HOM05D005629 ORTHO05D008000 4.2e-123 445.3 278 77.7
HPP92_024293 Vanilla planifolia HOM05D005629 ORTHO05D008000 6.1e-122 441.4 277 77.6
vmacro05954 Vaccinium macrocarpon HOM05D005629 ORTHO05D008000 1.4e-121 440.3 290 76.2
Hund04337 Selenicereus undatus HOM05D005629 ORTHO05D008000 2.0e-120 436.4 381 60.9
MELO3C014882.2 Cucumis melo HOM05D005629 ORTHO05D008000 9.7e-120 434.1 246 90.7
Migut.H00778 Erythranthe guttata HOM05D005629 ORTHO05D008000 3.7e-119 432.2 251 84.5
Nn4g22342 Nelumbo nucifera HOM05D005629 ORTHO05D008000 1.7e-116 423.3 332 67.2
Migut.K01513 Erythranthe guttata HOM05D005629 ORTHO05D008000 4.5e-109 398.7 261 77.8
Dinv25662 Davidia involucrata HOM05D005629 ORTHO05D000552 6.5e-108 394.8 211 91.9
AUR62003511 Chenopodium quinoa HOM05D005629 ORTHO05D008000 8.8e-105 384.4 250 74.8
Gorai.004G126700 Gossypium raimondii HOM05D005629 ORTHO05D008000 6.3e-103 378.3 234 79.5
Gohir.D08G117950 Gossypium hirsutum HOM05D005629 ORTHO05D008000 7.7e-101 371.3 232 78.9
AUR62017822 Chenopodium quinoa HOM05D005629 ORTHO05D008000 1.3e-100 370.5 235 76.6
Migut.G01029 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.2e-98 364.0 288 69.4
Manes.15G160600 Manihot esculenta HOM05D005629 ORTHO05D008000 1.2e-96 357.5 246 74.0
Cre14.g620150 Chlamydomonas reinhardtii HOM05D005629 ORTHO05D008000 1.3e-95 354.0 267 64.8
FAN05G5024 Fragaria x ananassa HOM05D005629 ORTHO05D008000 2.8e-95 352.8 249 73.5
MCO03G471 Micromonas commoda HOM05D005629 ORTHO05D008000 2.8e-95 352.8 262 63.4
FAN02G3075 Fragaria x ananassa HOM05D005629 ORTHO05D008000 4.5e-93 345.5 257 71.2
AagrBONN_evm.TU.Sc2ySwM_117.2248 Anthoceros agrestis HOM05D005629 ORTHO05D008000 5.0e-92 342.0 204 78.4
CARHR148330 Cardamine hirsuta HOM05D005629 ORTHO05D008000 1.3e-87 327.4 231 71.0
FAN14G4117 Fragaria x ananassa HOM05D005629 ORTHO05D008000 2.0e-85 320.1 313 58.8
PRCOL_00001739 Prasinoderma coloniale HOM05D005629 ORTHO05D008000 6.0e-77 292.0 263 53.6
Lsat_1_v5_gn_9_1240 Lactuca sativa HOM05D005629 ORTHO05D008000 6.8e-73 278.5 148 88.5
CDE05G1086 Ceratophyllum demersum HOM05D001132 ORTHO05D002510 4.9e-71 272.3 213 63.4
Zm00001eb202540 Zea mays HOM05D002249 ORTHO05D002443 2.9e-63 246.5 207 62.3
Migut.K01251 Erythranthe guttata HOM05D005629 ORTHO05D008000 6.9e-57 225.3 159 72.3
Zm00001eb427710 Zea mays HOM05D005629 ORTHO05D003422 3.6e-50 203.0 120 81.7
Zm00001eb174780 Zea mays HOM05D005629 ORTHO05D008000 8.1e-50 201.8 167 63.5
FvH4_6g53350 Fragaria vesca HOM05D005629 ORTHO05D022663 9.0e-49 198.4 321 40.5
FvH4_6g53390 Fragaria vesca HOM05D005629 ORTHO05D022663 2.6e-48 196.8 337 39.5
TAR622G1261 Trochodendron aralioides HOM05D005629 ORTHO05D008000 2.9e-47 193.4 112 83.9
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 2.9e-47 193.4 116 82.8
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 1.2e-45 188.0 128 74.2
FvH4_6g53420 Fragaria vesca HOM05D005629 ORTHO05D022663 1.3e-44 184.5 224 46.9
FAN02G3684 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.8e-33 147.5 78 88.5
CDE02G4678 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 4.0e-33 146.4 234 40.2
FAN14G1519 Fragaria x ananassa HOM05D005629 ORTHO05D022663 1.0e-31 141.7 285 34.0
MELO3C032122.2 Cucumis melo HOM05D005629 ORTHO05D008000 1.8e-28 131.0 63 98.4
arahy.Tifrunner.gnm1.ann1.0H9GWB Arachis hypogaea HOM05D005629 ORTHO05D008000 1.6e-26 124.4 76 77.6
Zm00001eb048250 Zea mays HOM05D005629 ORTHO05D008000 1.1e-25 121.7 73 76.7
PRCOL_00005410 Prasinoderma coloniale HOM05D005629 ORTHO05D333266 4.1e-25 119.8 285 29.5
Lsat_1_v5_gn_0_46360 Lactuca sativa HOM05D005629 ORTHO05D008000 5.0e-23 112.8 124 53.2
AagrBONN_evm.TU.Sc2ySwM_228.873 Anthoceros agrestis HOM05D005629 ORTHO05D008000 1.9e-22 110.9 334 26.6
FAN02G2357 Fragaria x ananassa HOM05D005629 ORTHO05D008000 5.7e-19 99.4 107 49.5
A02p35090 Brassica napus HOM05D005629 ORTHO05D008000 1.5e-16 91.3 81 59.3
BraA02t08515Z Brassica rapa HOM05D005629 ORTHO05D008000 4.5e-16 89.7 77 61.0
FvH4_6g53460 Fragaria vesca HOM05D005629 ORTHO05D022663 1.3e-10 71.6 139 33.1
CAN.G792.7 Capsicum annuum HOM05D002518 ORTHO05D002630 8.2e-10 68.9 43 74.4
BolC2t11443H Brassica oleracea HOM05D005629 ORTHO05D008000 1.0e-07 62.0 53 60.4
FvH4_6g53450 Fragaria vesca HOM05D005629 ORTHO05D008000 1.3e-07 61.6 103 38.8
Zm00001eb059400 Zea mays HOM05D003056 ORTHO05D003422 1.9e-06 57.8 59 59.3
FvH4_6g53451 Fragaria vesca HOM05D005629 ORTHO05D196308 5.5e-06 56.2 75 42.7


User provided reference genes

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