Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 0.0e+00 1078.2 576 100.0
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 7.7e-266 920.2 571 86.0
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 5.7e-261 904.0 571 84.8
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 2.3e-238 828.9 576 77.6
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.6e-167 593.6 581 58.5
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 1.7e-164 583.6 556 58.5
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 1.1e-158 564.3 599 54.9
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 2.0e-157 560.1 572 55.8
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 2.2e-151 540.0 580 53.4
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 2.8e-151 539.7 573 55.8
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 8.2e-151 538.1 579 52.5
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 6.5e-148 528.5 581 52.5
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 8.5e-148 528.1 578 52.8
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 3.0e-145 519.6 574 54.2
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 8.8e-145 518.1 580 53.6
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 1.5e-144 517.3 571 53.6
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.3e-144 516.2 579 53.4
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 7.4e-144 515.0 583 53.2
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.8e-142 510.4 575 53.2
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 2.4e-142 510.0 577 51.6
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 7.0e-142 508.4 573 51.3
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 5.9e-141 505.4 641 49.5
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 2.9e-140 503.1 573 51.0
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 6.5e-140 501.9 572 51.6
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 2.5e-139 500.0 575 51.0
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 2.5e-139 500.0 575 51.0
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 3.2e-139 499.6 590 51.2
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 2.7e-138 496.5 573 50.4
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 6.1e-138 495.4 569 48.5
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 2.6e-136 490.0 574 50.7
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.6e-136 490.0 579 52.0
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 1.3e-135 487.6 574 50.3
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 3.7e-135 486.1 573 50.3
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 4.8e-135 485.7 571 50.6
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 2.4e-134 483.4 578 49.8
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 3.1e-134 483.0 590 51.9
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 4.1e-134 482.6 572 48.3
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 2.7e-133 479.9 584 50.9
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 2.7e-133 479.9 603 48.4
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.5e-133 479.6 577 49.9
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 4.5e-133 479.2 577 50.3
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 5.9e-133 478.8 577 49.9
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 2.9e-132 476.5 576 50.2
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 6.5e-132 475.3 577 49.6
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 1.8e-129 467.2 580 49.1
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 2.6e-128 463.4 581 48.0
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 1.7e-127 460.7 576 47.9
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 6.3e-127 458.8 545 46.8
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 8.3e-127 458.4 589 46.9
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 1.1e-126 458.0 576 47.4
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 1.8e-126 457.2 574 47.7
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 1.8e-126 457.2 581 47.8
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 9.1e-126 454.9 578 47.8
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.7e-124 450.7 576 48.6
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 2.9e-124 449.9 573 48.2
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 8.6e-124 448.4 573 47.6
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 1.9e-123 447.2 581 46.8
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 1.9e-123 447.2 588 45.6
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 1.9e-123 447.2 573 47.5
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 2.1e-122 443.7 534 48.1
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 8.0e-122 441.8 588 47.3
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 5.2e-121 439.1 470 52.8
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 2.0e-120 437.2 588 45.6
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 9.8e-120 434.9 553 45.8
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 6.3e-119 432.2 572 44.2
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 1.1e-118 431.4 578 44.6
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 7.8e-117 425.2 579 46.3
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 8.6e-116 421.8 555 45.0
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 7.3e-115 418.7 564 45.6
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 1.2e-114 417.9 550 46.4
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 1.6e-114 417.5 565 45.5
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 1.4e-113 414.5 572 46.2
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 2.0e-112 410.6 584 44.2
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 3.4e-112 409.8 581 44.6
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 9.8e-112 408.3 589 44.1
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 2.4e-110 403.7 551 43.2
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 3.2e-110 403.3 574 42.5
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 3.2e-110 403.3 595 43.2
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 7.0e-110 402.1 552 42.8
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 6.0e-109 399.1 588 45.7
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 5.0e-108 396.0 465 51.4
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 6.6e-108 395.6 592 42.4
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 5.6e-107 392.5 551 42.3
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 2.8e-106 390.2 590 42.4
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 3.6e-106 389.8 607 44.3
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 6.2e-106 389.0 588 42.3
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 4.0e-105 386.3 398 54.3
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 1.5e-104 384.4 585 43.4
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.5e-104 384.4 463 51.2
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 1.7e-103 380.9 588 41.5
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 6.4e-103 379.0 552 40.2
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 6.4e-103 379.0 586 42.0
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.9e-102 377.5 256 80.9
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 1.9e-102 377.5 582 41.9
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 2.4e-102 377.1 563 41.0
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 9.2e-102 375.2 469 47.3
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 7.8e-101 372.1 555 41.8
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 7.3e-99 365.5 468 47.2
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 9.5e-99 365.2 551 39.7
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 8.1e-98 362.1 582 39.0
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 4.0e-97 359.8 582 38.8
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 2.2e-95 354.0 582 38.3
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 6.4e-95 352.4 586 39.6
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 8.3e-95 352.1 548 40.5
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 1.9e-94 350.9 462 46.3
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.4e-94 350.5 371 53.4
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 5.4e-94 349.4 583 36.4
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 5.4e-94 349.4 551 38.5
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 2.7e-93 347.1 511 41.7
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 1.0e-92 345.1 570 38.8
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 1.7e-92 344.4 582 37.1
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 5.1e-92 342.8 581 36.5
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 5.1e-92 342.8 582 36.9
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 1.1e-91 341.7 578 38.8
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 1.2e-90 338.2 574 37.5
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 6.2e-90 335.9 583 39.8
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 1.4e-89 334.7 583 39.8
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 2.4e-89 334.0 583 39.5
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 8.9e-89 332.0 546 37.9
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 1.1e-86 325.1 372 52.4
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 2.4e-86 323.9 561 40.1
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 7.8e-85 318.9 464 45.5
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 8.7e-84 315.5 272 62.1
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 3.6e-82 310.1 472 44.1
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 1.1e-78 298.5 574 35.2
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.7e-76 291.2 265 60.0
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 1.5e-67 261.5 553 33.1
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.3e-66 258.5 421 38.7
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 9.6e-59 232.3 550 32.2
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 3.7e-58 230.3 337 43.9
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.8e-52 211.5 452 33.2
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 6.3e-50 203.0 250 49.6
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 3.9e-44 183.7 346 36.4
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 7.2e-38 162.9 252 41.7
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 2.7e-37 161.0 254 37.0
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 1.8e-36 158.3 413 31.7
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 7.4e-35 152.9 155 56.1
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.7e-34 151.8 155 56.1
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 1.1e-33 149.1 159 52.8
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 3.6e-29 134.0 474 25.5
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 3.0e-28 131.0 565 26.4
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 4.0e-28 130.6 157 49.0
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 1.1e-27 129.0 165 39.4
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 2.0e-27 128.3 140 50.0
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 2.0e-27 128.3 576 23.8
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.7e-26 125.2 109 65.1
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 3.7e-26 124.0 145 45.5
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 1.8e-25 121.7 154 42.9
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 1.3e-23 115.5 514 24.1
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 2.2e-23 114.8 85 70.6
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 4.2e-22 110.5 569 22.5
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 7.2e-22 109.8 123 52.8
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 1.2e-21 109.0 173 41.0
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.6e-21 108.6 107 55.1
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.8e-20 105.1 147 40.8
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 4.0e-20 104.0 120 45.8
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 2.6e-19 101.3 162 37.7
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 3.7e-18 97.4 594 23.4
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 8.3e-18 96.3 134 48.5
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.8e-17 95.1 109 45.0
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 2.4e-17 94.7 70 65.7
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 4.1e-17 94.0 543 25.0
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.2e-16 92.4 169 36.1
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 2.0e-16 91.7 137 39.4
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 3.5e-16 90.9 213 36.6
GSVIVG01038756001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.2e-14 84.0 83 54.2
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 5.5e-14 83.6 129 39.5
arahy.Tifrunner.gnm1.ann1.ZN95YA Arachis hypogaea HOM05D003578 ORTHO05D004021 1.8e-12 78.6 84 45.2
Atru.chr6.1018 Acer truncatum HOM05D003578 ORTHO05D004021 9.8e-11 72.8 70 52.9
ATR0193G025 Amborella trichopoda HOM05D003578 ORTHO05D004021 8.3e-10 69.7 111 35.1
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.1e-09 69.3 71 53.5
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 1.8e-09 68.6 79 49.4
Pp3c11_11580 Physcomitrium patens HOM05D003578 ORTHO05D004021 4.1e-09 67.4 455 21.8
MCO01G050 Micromonas commoda HOM05D003578 ORTHO05D004021 2.7e-08 64.7 187 25.7
ATR0686G029 Amborella trichopoda HOM05D003578 ORTHO05D004021 5.0e-07 60.5 113 31.0
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 6.6e-07 60.1 90 36.7
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.9e-06 58.5 79 45.6
GSVIVG01023070001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.3e-06 57.8 52 53.8
Sopen01g047030 Solanum pennellii HOM05D003578 ORTHO05D004021 7.3e-06 56.6 96 42.7


User provided reference genes

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